mRNA_F-serratus_M_contig88.20160.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig88.20160.1
Unique NamemRNA_F-serratus_M_contig88.20160.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.160e-42
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query:    3 DPCSNGENTSMLACSLCAETGV-RGGAMKMVTP-GVERSRSWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDIKVPLD 416
            D C  GE+ S+  C LC ET + +GGAMK V   G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D+  G++ RS+  + +L+V+C+ H  D+   LD
Sbjct:   45 DVCEAGEDASVTVCELCKETNLSKGGAMKQVLGNGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDR--GIINRSISVQSHLHVFCQDHKADVISSLD 182          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.920e-34
Identity = 55/106 (51.89%), Postives = 80/106 (75.47%), Query Frame = 3
Query:   99 GVERSRSWVHVCCTMWIPEVFVGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDIKVPLD 416
            G    + WVHV C++WIPEV   S+EL PV+L+++ K RK LKC+LCG++G CVQCAGGRCL++YHPWCL+H+D+  G++ RS+  + +L+V+C+ H  D+   LD
Sbjct:    8 GKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDR--GIINRSISVQSHLHVFCQDHKADVISSLD 111          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A482RWD5_9ARCH (PHD-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWD5_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 9.270e-21
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 3
Query:    9 CSNGENTSMLACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVG--SDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKN-NGLLFRSLDTKGNLNVYCRKHIGDIKVPL 413
            C  G + + ++C LC+    +GGA K +    ++   W H  C+ WIPE++    ++++  ++   +   R  LKC LC ++G CVQC+ GRC++A HPWC LHT +     + R  D      ++CR H   +  P+
Sbjct:   58 CRVGLDPTTVSCELCS---YKGGAYKPI----DKPHKWAHPLCSTWIPELYEEHKANKVPIINTSKLDSKRFKLKCALCKQKGACVQCSSGRCVIAAHPWCALHTPQGFTRRIVRGPDDLPLWQIFCRTHASGVSEPV 188          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A8J5B3H7_9ASCO (NuA3 HAT complex component NTO1 n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5B3H7_9ASCO)

HSP 1 Score: 84.0 bits (206), Expect = 3.630e-16
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   39 ACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDELEPV-HLEYVPKDRKTLKCVLCGKR-GVCVQCAGGRCLVAYHPWCL----LHTDKNNGLLFRSLDTKGNLNVYCRKHIGD 398
            +C  C     + GA KM T      ++W HV C +WIPEV +G   +EP+ H+  VP+ R  L C +C +R G C+QCA G C+ A+H  C     L  +  +G+   ++   G++  YC  H GD
Sbjct:  273 SCIFCPS---QVGAFKMTT-----QKTWGHVICALWIPEVKIGGRNMEPISHVRDVPRSRWKLHCYICKQRMGACIQCARGTCVQAFHVTCARRAGLQMEMTHGVQ-GAIFEPGSMRAYCHNHGGD 389          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL)

HSP 1 Score: 83.6 bits (205), Expect = 5.250e-16
Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 3
Query:   51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVF---VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            CA   + GGA+++     ++   W HV C  WIPE++    G+ + E V +  + K R TL+C++CG RG C+QC  GRC  A+H  C      +  +LF   + +     +CR H+ D+
Sbjct:   58 CAVCPIAGGALRLT----DQCDVWCHVLCLNWIPELYHSLTGAMD-EAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSS--ILFTGYNLQNQQVYHCRTHLSDV 170          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN)

HSP 1 Score: 83.2 bits (204), Expect = 7.160e-16
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   +  +  L+F   +++     +C+ H+ D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPSS--LVFTGYNSQNQQVYHCKTHLSDV 186          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: D0MU88_PHYIT (Kinesin-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU88_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 7.320e-16
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 3
Query:   51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDEL--EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            CA   + GGA+++     ++   W HV C  WIPE++     +  E V +    K R TL+CV+CG RG C+QC  GRC  A+H  C   +  +  L+F   +++     +C+ H+ D+
Sbjct:   74 CAVCPIAGGALRLT----DQRDVWCHVLCINWIPELYHSLTGVMDEAVKISLYEKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPSS--LVFTGYNSQNQQVYHCKTHLSDV 186          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A484E017_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E017_BRELC)

HSP 1 Score: 82.8 bits (203), Expect = 9.760e-16
Identity = 38/119 (31.93%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   51 CAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVF--VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            CA   + GGA+++     ++   W H+ C  WIPE++  +     E V +  + K R TL+C++CG RG C+QC  GRC  A+H  C      +  LLF   + +     +C+ H+ D+
Sbjct:   71 CAVCPIAGGALRLT----DQRDVWCHLLCINWIPELYHSLSGAMDEAVQISLLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSS--LLFTGYNAQNQQVYHCKTHLSDV 183          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.950e-16
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   42 CSLCAETGVRGGAMKMVT-PGVERSRSWVHVCCTMWIPEVFVG-SDEL-EPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            C +C    V GGA++  + PGV     WVHV C  WIPE+    + EL + V++  + + R+TL+C++CG+RG C+QC  GRC  A+H  C + +     L+F   +       +C+ H+ D+
Sbjct:   95 CVVCP---VEGGALRRTSQPGV-----WVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPST--LIFTGYNGANQQVYHCKAHLADV 207          
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Match: K3WLS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLS9_GLOUD)

HSP 1 Score: 81.6 bits (200), Expect = 2.480e-15
Identity = 39/123 (31.71%), Postives = 70/123 (56.91%), Query Frame = 3
Query:   42 CSLCAETGVRGGAMKMVT-PGVERSRSWVHVCCTMWIPEVF--VGSDELEPVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNGLLFRSLDTKGNLNVYCRKHIGDI 401
            C++C    + GGA++  + PGV     W HV C  WIPE+   +  +  E V++  + + R++L+C++CG+RG C+QC  GRC  A+H  C + +  +  L+F   + +     +C+ H+ D+
Sbjct:   94 CAICP---IEGGALRRTSQPGV-----WSHVLCINWIPELSHSLTGEMNEEVNIALLDRSRESLRCLVCGQRGGCIQCISGRCTRAFHVLCAMRSPAS--LIFTGYNGENQQVYHCKTHLSDV 206          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig88.20160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV42_ECTSI1.160e-4250.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE1.920e-3451.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RWD5_9ARCH9.270e-2131.88PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8J5B3H7_9ASCO3.630e-1635.71NuA3 HAT complex component NTO1 n=1 Tax=Yarrowia s... [more]
A0A0P1AX52_PLAHL5.250e-1633.33Kinesin-like protein n=1 Tax=Plasmopara halstedii ... [more]
A0A833WFP8_PHYIN7.160e-1632.77PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]
D0MU88_PHYIT7.320e-1632.77Kinesin-like protein n=1 Tax=Phytophthora infestan... [more]
A0A484E017_BRELC9.760e-1631.93Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A5D6XI01_9STRA9.950e-1634.96Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WLS9_GLOUD2.480e-1531.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig88contigF-serratus_M_contig88:443534..447602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue2.9e-34
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons4
Model size416
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig88.20160.1prot_F-serratus_M_contig88.20160.1Fucus serratus malepolypeptideF-serratus_M_contig88 443534..446941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932563.6804638-CDS-F-serratus_M_contig88:443533..4435781622932563.6804638-CDS-F-serratus_M_contig88:443533..443578Fucus serratus maleCDSF-serratus_M_contig88 443534..443578 -
1690964367.6258228-CDS-F-serratus_M_contig88:443533..4435781690964367.6258228-CDS-F-serratus_M_contig88:443533..443578Fucus serratus maleCDSF-serratus_M_contig88 443534..443578 -
1622932563.6953578-CDS-F-serratus_M_contig88:443953..4441691622932563.6953578-CDS-F-serratus_M_contig88:443953..444169Fucus serratus maleCDSF-serratus_M_contig88 443954..444169 -
1690964367.6367798-CDS-F-serratus_M_contig88:443953..4441691690964367.6367798-CDS-F-serratus_M_contig88:443953..444169Fucus serratus maleCDSF-serratus_M_contig88 443954..444169 -
1622932563.7110047-CDS-F-serratus_M_contig88:446818..4469411622932563.7110047-CDS-F-serratus_M_contig88:446818..446941Fucus serratus maleCDSF-serratus_M_contig88 446819..446941 -
1690964367.6449187-CDS-F-serratus_M_contig88:446818..4469411690964367.6449187-CDS-F-serratus_M_contig88:446818..446941Fucus serratus maleCDSF-serratus_M_contig88 446819..446941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932563.7228656-UTR-F-serratus_M_contig88:446941..4469501622932563.7228656-UTR-F-serratus_M_contig88:446941..446950Fucus serratus maleUTRF-serratus_M_contig88 446942..446950 -
1690964367.6533113-UTR-F-serratus_M_contig88:446941..4469501690964367.6533113-UTR-F-serratus_M_contig88:446941..446950Fucus serratus maleUTRF-serratus_M_contig88 446942..446950 -
1622932563.7344074-UTR-F-serratus_M_contig88:447579..4476021622932563.7344074-UTR-F-serratus_M_contig88:447579..447602Fucus serratus maleUTRF-serratus_M_contig88 447580..447602 -
1690964367.6616056-UTR-F-serratus_M_contig88:447579..4476021690964367.6616056-UTR-F-serratus_M_contig88:447579..447602Fucus serratus maleUTRF-serratus_M_contig88 447580..447602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig88.20160.1

>prot_F-serratus_M_contig88.20160.1 ID=prot_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MLACSLCAETGVRGGAMKMVTPGVERSRSWVHVCCTMWIPEVFVGSDELE
PVHLEYVPKDRKTLKCVLCGKRGVCVQCAGGRCLVAYHPWCLLHTDKNNG
LLFRSLDTKGNLNVYCRKHIGDIKVPLD
back to top

mRNA from alignment at F-serratus_M_contig88:443534..447602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig88.20160.1 ID=mRNA_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=mRNA|length=4069bp|location=Sequence derived from alignment at F-serratus_M_contig88:443534..447602- (Fucus serratus male)
GCGACCCTTGTTCCAATGGAGAGGTGAGGCATCCGACTTTTTTACGGTCC CGAATCGACCCCTCCATATCTTGAGGAAGTCCTGAGTTTTTTAGAGACGA TCGTGAAACGGATGTTCAGAGTTTTCCGTATGAACTCTCCGCGTACTGCG CATAGAATTGAGACATCTTCCCAGTGGCGAATCTTTTTCATAACCCCTCC ACCCGCCCCCCATCACCATCGCTACCACCACTAAAATCGCAAGCCGTCTA AACAGTGCGGTCACTAGCAGACTCTGTCGCGGCGCGATGACAGTACCAGA AGAATAGCTAGTTGAACAGTCTACGGTATGTACTGGTACTCCCTTACCTG GTATGTAATAGTTGTTCGGTTTTCGTGTCCCCTTCCCCGCATGTTCATAC AGAAGATGTGGCGTTTTTATGCTATAATAGTAGTGTACACACCCACATGA AAGTTTTGCATGTGTCGTTGAGGATCTTGAGGCTGCAGGGTTTTGAAAGA AAAAACCGTGAGTGCGGCAGCCGTGAGTTTTCGCTGTTTTGCTGTTAAAA AAACGCAAAACAAAATATAACCAACAATAACAAAAACAAGGGCGTGGATA TTCGAGAGATATACACGAGACTGTCACTAACCTCTTGCCCCTCCTTGTCC AGAATACATCGATGCTCGCGTGCTCGCTTTGCGCCGAGACGGGAGTGAGG GGAGGGGCTATGAAAATGGTCACGCCAGGGGTGGAGAGGTCGCGAAGTTG GGTGCACGTCTGCTGCACCATGTGGATTCCAGAGGTGCGCTTACTATCTT GTTTTTATTTGCATTGTTACGAAGTTGTTGTCTATTTTTACTAGTGAACG ACATCCTACGGCACGGAGCGAGAGGTGCGACTTACTTTGCCATCTCCTCC CGACACAGCTGTGGGTACAGTACTAATATCGTGTAGCTTATTTTCCGTCT TACTTTGAGTGCTGTATTTTGCTGTTCTGAATGCACACCTTGTGGTGTCT TCCCCGAGCAGTAAGGGTTTGAGGGAGAGAGATAAAGGATGGGGGGGGGG GGAGTGGGTAAGTATGGAGAAGCGCAGAGGAACGGTGGAGGTAATCCTTG CTTGATTCTTGGTCTGATGCGGAAGTGGTACCTTGGGTCATCTCAGTTGT TCCCACATATTGCTGGCAGGACAGCATGTCGTTTCCCCCTCCATTCCGTT CGGTGTGTCATCTGTTCTGAGTCACCTTTGCTGTTTTATCTTTTTCAGCC GATTTGGCTCCATATCGATACTGCTACAGCGGTCCCCAAATCTATATGCG GTCTATTAATAGTAGACACAGACACGGAAACGTGCCACAAATCACACACC GCGACGAAAAAAGTACAAGGAAGACATGGAAGCTATTATACTATACCCGA ATCAGCTCTAATGTACGCTATCTCGCTACCCCGACACAGGCGAGGGAGCT TGTCATACTATTAATAATATTATAACTAAAAAAACAAGAAAATAAAAGAA AGAAGAACCGTGAACGCTCAAGTGTTTTCCTTCACGCATCCAAGTCAGCC AATCGTCCTCCTTCACTTCGCGCCTCGCCCTCGCTTCACCCTGCTGTCGA GTTTGTTTGTGGGGCATCACTCGTTTGGGTAGGCGACCGTCGGGCATGCG AAAGATCGCACCCGCCCCAAAGGAGACACCTCAATCGTACGGTAGTCTCG ATGCTCTCGCAGCCGGTTTGTTTTTGAGAGTGTGGTGTTCCGTTCGCTCT GTTCGCCTCGCTCCGATGATGTACAACATAATATGGTAGTGTATGGCGAG GATTTTGGCGCAGTGGTCCTTGCGGAGGGTCCACGTCGCGCACAAGACGG CCTCGACCACATCGGCTTTTACCATCTGCGCCTCGAATATGATAAGCACG TTTGATCGGTAGTAGACAGTTAGGTCCTCCTTGTGCTTTCTTACCCGCCG CTACGCCGTACTTTATACGGTACTGTCTGCTATCTTGCACGCTTCCTTCG TATTGTTTCGGCCATTGCATCTGGGGTTTCGGTGACGCTGCCTCCAAGAT GCACAACGAGTCCGTTTGCCTGTGTAGCCCTGTTGTGCATTTTGTCTAGC GTGCGCGCGCGGTTATTGGCATGCACCTTTTTTTCTTCTTCTTCTTCTCC TTTTCAGATACTTTGATATATCGAAAGCGCCGCGAATTCGTACCTGAACA ATGGTTTGTGACATCACTATCGCGAGAGTCCTCGCGATGATCTCGAAACA ACGTAAGCATCGTTAGCGTATACCATGCCTGACACAGCTCGTTTTACTTC TGCCAGATATTTCGAGAGGAAGTCCAGCTCCGCGCTGATTTTTTGTAGAC AAATGATCTATCTCCCTCCCGCTTCGCCCTTGTACTGTCTCTTGCAGTCC AACGGAATCACACCCCAGTTTTTCATACGTTTTTCGCACCTCCATAGCAC GCCCAGGGCCATCGTTCGTACGTTGTGGACTGTGATGGCGATCCCGAGTC GGCGGATCCGCTTGCGGGTCCTTATTCCCTTCTACTTCTCCTGCCGCCGC GCGGGCCGCCCTGCTCGCCCCCGCCTCCGATTTTTGGCCCAGTAATTTAC TTTTGTCTGTGCTTCCCTTCTTGCCTTGAGGTCTGGTCGCACGAGTCGGG TTCAGCCTGCCCTTCCCGTGTCGGTCCGCTCTCCTTTAGTCCCGGGTCGA ACCTGACAAACCCCGTGCTCATTCACGGGCTCTTCTACCCTACTCCCCAC CCACCCACCCCGTTTTCCGCGGCAGTATCCTTCTACTACAGCTGCTCCGA TCGTTCGAGGGACGAGGGCCGCCCTGCTCGCCCTCGCCTCCGGTTTTTGG CCCAGTAACTTACTTTTGTCTGTCCTTCCCTTCTTGCCTTGAGGTCTGGT CGCACGAGTCGGGTTCAGCCTGCCCTTCCCGTGTCGGTCCGCTCTCCTTT AGTCCAGGGTCGAACCTGAAAAACCCCGTGCTCATTCACGGGCTCTTCTA CCCCACCCCCAACCCACCTCCCCCGCTTTCCGCGGCAGCATCCTTCTGCT ACAGCTGCTCCGATCGTCCGAGGGACGAACTGTTTCACAAGAGGGTTCAG CATAATCTTCGCTGCCAGCGCCATTTGTTGTGATCGTGCGCCCCGACCCC GATCCGCAAGCCCCGGGCGTTATTTAATACTGGTAAATCACCCAATCTTT GCGTGCATGTCTCTGTCTCCCACCTCACGTCCGCGCGGCCCAGGGTCGAA CTCACGCCCATCTCGACCAGGAAGCAGCCGGGGTACGAAAGCCTTTTTTT GTGTGTGCTCTAGGATTAACTTTCAACGGAAACGGAGATAGACATTGGGT ACACCTACTCTTTTACTACGTCGCAGCACTGCGAATATTTCTTACACCGA TAAAACGTACGACGATGAAACACGCCCGTACAGGTGTTTGTAGGCTCCGA CGAGCTGGAGCCGGTGCACCTGGAGTACGTGCCCAAGGATCGCAAGACGC TCAAGTGCGTGCTCTGTGGGAAGCGGGGAGTGTGCGTGCAGTGCGCAGGA GGGCGTTGCCTGGTGGCCTACCACCCATGGTGCCTGCTACATACGGACAA GAATAACGGCCTCCTGTTTCGATCTCTAGACACGAAGGGAAACCTCAACG TGAGATGACGTTTCAGGCAACAACGCGTGTCCGACGATTCGGTTGGTTTG GCGGGGTGGAGTGTGTTGTGAGATTTGGATCGGGTGATGCTCTGGATAGT TCGCTGTAGTTTGAACCACAAGAATGTTGTTTTTTTCGTCATTGAGCCGT AGCTTGCCTGAAGTGTAGGTCAAGAATGTTTTCAAAGCCGCCCGATCGCC GTTTCTGCAGCCACACACTTCTGTTTTTTTCTTGTTTCTGCCGCCGCCGC CGTCTCTCGTCCCCTCCCCCCACCTGCAAGCAAGTTGCTCTTCTGGGCGT GACTCCCCCCCTCTCCCCGTCGAAATAACGCCTCTTGGAACTCAATGCCC TTGCAATGACCTGTGGCCTCTCAGGTATACTGCCGAAAACACATTGGGGA CATCAAAGTTCCTCTCGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig88:443534..447602-

>mRNA_F-serratus_M_contig88.20160.1 ID=mRNA_F-serratus_M_contig88.20160.1|Name=mRNA_F-serratus_M_contig88.20160.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig88:443534..447602- (Fucus serratus male)
ATGCTCGCGTGCTCGCTTTGCGCCGAGACGGGAGTGAGGGGAGGGGCTAT
GAAAATGGTCACGCCAGGGGTGGAGAGGTCGCGAAGTTGGGTGCACGTCT
GCTGCACCATGTGGATTCCAGAGATGCTCGCGTGCTCGCTTTGCGCCGAG
ACGGGAGTGAGGGGAGGGGCTATGAAAATGGTCACGCCAGGGGTGGAGAG
GTCGCGAAGTTGGGTGCACGTCTGCTGCACCATGTGGATTCCAGAGGTGT
TTGTAGGCTCCGACGAGCTGGAGCCGGTGCACCTGGAGTACGTGCCCAAG
GATCGCAAGACGCTCAAGTGCGTGCTCTGTGGGAAGCGGGGAGTGTGCGT
GCAGTGCGCAGGAGGGCGTTGCCTGGTGGCCTACCACCCATGGTGCCTGC
TACATACGGACAAGAATAACGGCCTCCTGTTTCGATCTCTAGACACGAAG
GGAAACCTCAACGTGTTTGTAGGCTCCGACGAGCTGGAGCCGGTGCACCT
GGAGTACGTGCCCAAGGATCGCAAGACGCTCAAGTGCGTGCTCTGTGGGA
AGCGGGGAGTGTGCGTGCAGTGCGCAGGAGGGCGTTGCCTGGTGGCCTAC
CACCCATGGTGCCTGCTACATACGGACAAGAATAACGGCCTCCTGTTTCG
ATCTCTAGACACGAAGGGAAACCTCAACGTATACTGCCGAAAACACATTG
GGGACATCAAAGTTCCTCTCGACGTATACTGCCGAAAACACATTGGGGAC
ATCAAAGTTCCTCTCGAC
back to top