mRNA_F-serratus_M_contig876.20117.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig876.20117.1
Unique NamemRNA_F-serratus_M_contig876.20117.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig876.20117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig876contigF-serratus_M_contig876:172508..173030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.6088612-CDS-F-serratus_M_contig876:172507..1728371622932555.6088612-CDS-F-serratus_M_contig876:172507..172837Fucus serratus maleCDSF-serratus_M_contig876 172508..172837 +
1690964363.7862704-CDS-F-serratus_M_contig876:172507..1728371690964363.7862704-CDS-F-serratus_M_contig876:172507..172837Fucus serratus maleCDSF-serratus_M_contig876 172508..172837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932555.624423-UTR-F-serratus_M_contig876:172837..1730301622932555.624423-UTR-F-serratus_M_contig876:172837..173030Fucus serratus maleUTRF-serratus_M_contig876 172838..173030 +
1690964363.799736-UTR-F-serratus_M_contig876:172837..1730301690964363.799736-UTR-F-serratus_M_contig876:172837..173030Fucus serratus maleUTRF-serratus_M_contig876 172838..173030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig876.20117.1prot_F-serratus_M_contig876.20117.1Fucus serratus malepolypeptideF-serratus_M_contig876 172508..172837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig876.20117.1

>prot_F-serratus_M_contig876.20117.1 ID=prot_F-serratus_M_contig876.20117.1|Name=mRNA_F-serratus_M_contig876.20117.1|organism=Fucus serratus male|type=polypeptide|length=110bp
AFTRTAGGRVVIVAGCNDGPCGLAQHQGRVGQAGAQGGVDHSFMDEDTTS
EPQEDVLPISPASADEKHPPGSSDKDESNDEEEEAGSQGERLRRDFDEMI
MFGGNRWST*
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mRNA from alignment at F-serratus_M_contig876:172508..173030+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig876.20117.1 ID=mRNA_F-serratus_M_contig876.20117.1|Name=mRNA_F-serratus_M_contig876.20117.1|organism=Fucus serratus male|type=mRNA|length=523bp|location=Sequence derived from alignment at F-serratus_M_contig876:172508..173030+ (Fucus serratus male)
GCATTCACACGGACAGCAGGGGGGCGAGTTGTGATCGTCGCTGGTTGTAA
CGATGGACCCTGCGGCCTTGCTCAACATCAAGGCCGAGTTGGGCAAGCTG
GGGCACAAGGGGGCGTTGATCACTCGTTCATGGACGAAGACACCACATCG
GAGCCGCAGGAGGACGTGCTTCCGATCTCACCTGCTTCCGCCGACGAGAA
ACACCCGCCGGGTTCAAGCGACAAGGACGAGAGCAACGACGAGGAAGAGG
AGGCGGGAAGCCAGGGCGAGAGACTGCGTAGAGACTTTGATGAGATGATT
ATGTTTGGGGGTAACCGGTGGTCGACATGATATACAGAGTCTCCGTGGTT
TGTATAAGATACATGAGACGTTATAGTTCGGTTTGATGAGTGGTGAGTGA
CTGGGCTTTCTGTCTTGGGGCTCTGGTAGTGTGAGTGTGTGAGTGTGTGC
ATCTTTACAGGTCGATATGTCTGCATGACTGCTTGGTGGTGAATGGAACA
AGCAAGTCTATAATAAATATACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig876:172508..173030+

>mRNA_F-serratus_M_contig876.20117.1 ID=mRNA_F-serratus_M_contig876.20117.1|Name=mRNA_F-serratus_M_contig876.20117.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig876:172508..173030+ (Fucus serratus male)
GCATTCACACGGACAGCAGGGGGGCGAGTTGTGATCGTCGCTGGTTGTAA
CGATGGACCCTGCGGCCTTGCTCAACATCAAGGCCGAGTTGGGCAAGCTG
GGGCACAAGGGGGCGTTGATCACTCGTTCATGGACGAAGACACCACATCG
GAGCCGCAGGAGGACGTGCTTCCGATCTCACCTGCTTCCGCCGACGAGAA
ACACCCGCCGGGTTCAAGCGACAAGGACGAGAGCAACGACGAGGAAGAGG
AGGCGGGAAGCCAGGGCGAGAGACTGCGTAGAGACTTTGATGAGATGATT
ATGTTTGGGGGTAACCGGTGGTCGACATGAGCATTCACACGGACAGCAGG
GGGGCGAGTTGTGATCGTCGCTGGTTGTAACGATGGACCCTGCGGCCTTG
CTCAACATCAAGGCCGAGTTGGGCAAGCTGGGGCACAAGGGGGCGTTGAT
CACTCGTTCATGGACGAAGACACCACATCGGAGCCGCAGGAGGACGTGCT
TCCGATCTCACCTGCTTCCGCCGACGAGAAACACCCGCCGGGTTCAAGCG
ACAAGGACGAGAGCAACGACGAGGAAGAGGAGGCGGGAAGCCAGGGCGAG
AGACTGCGTAGAGACTTTGATGAGATGATTATGTTTGGGGGTAACCGGTG
GTCGACATGA
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