mRNA_F-serratus_M_contig864.20015.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig864.20015.1
Unique NamemRNA_F-serratus_M_contig864.20015.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig864.20015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig864contigF-serratus_M_contig864:104158..106284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score68.6
Seed ortholog evalue6.4e-09
Seed eggNOG ortholog1455608.JDTH01000002_gene1762
Preferred namethsA
KEGG koko:K22447
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0042802,GO:0044183,GO:0051082,GO:0061077
EggNOG free text desc.Belongs to the TCP-1 chaperonin family
EggNOG OGs23SSR@183963,2XUDQ@28890,COG0459@1,arCOG01257@2157
COG Functional cat.O
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons5
Model size1045
Cds size993
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig864.20015.1prot_F-serratus_M_contig864.20015.1Fucus serratus malepolypeptideF-serratus_M_contig864 104158..106233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932534.4293869-CDS-F-serratus_M_contig864:104157..1042391622932534.4293869-CDS-F-serratus_M_contig864:104157..104239Fucus serratus maleCDSF-serratus_M_contig864 104158..104239 -
1690964353.7729433-CDS-F-serratus_M_contig864:104157..1042391690964353.7729433-CDS-F-serratus_M_contig864:104157..104239Fucus serratus maleCDSF-serratus_M_contig864 104158..104239 -
1622932534.4446802-CDS-F-serratus_M_contig864:104367..1046631622932534.4446802-CDS-F-serratus_M_contig864:104367..104663Fucus serratus maleCDSF-serratus_M_contig864 104368..104663 -
1690964353.7882822-CDS-F-serratus_M_contig864:104367..1046631690964353.7882822-CDS-F-serratus_M_contig864:104367..104663Fucus serratus maleCDSF-serratus_M_contig864 104368..104663 -
1622932534.4673486-CDS-F-serratus_M_contig864:104892..1052791622932534.4673486-CDS-F-serratus_M_contig864:104892..105279Fucus serratus maleCDSF-serratus_M_contig864 104893..105279 -
1690964353.806857-CDS-F-serratus_M_contig864:104892..1052791690964353.806857-CDS-F-serratus_M_contig864:104892..105279Fucus serratus maleCDSF-serratus_M_contig864 104893..105279 -
1622932534.481881-CDS-F-serratus_M_contig864:105558..1056561622932534.481881-CDS-F-serratus_M_contig864:105558..105656Fucus serratus maleCDSF-serratus_M_contig864 105559..105656 -
1690964353.8198786-CDS-F-serratus_M_contig864:105558..1056561690964353.8198786-CDS-F-serratus_M_contig864:105558..105656Fucus serratus maleCDSF-serratus_M_contig864 105559..105656 -
1622932534.5006497-CDS-F-serratus_M_contig864:106103..1062331622932534.5006497-CDS-F-serratus_M_contig864:106103..106233Fucus serratus maleCDSF-serratus_M_contig864 106104..106233 -
1690964353.8310635-CDS-F-serratus_M_contig864:106103..1062331690964353.8310635-CDS-F-serratus_M_contig864:106103..106233Fucus serratus maleCDSF-serratus_M_contig864 106104..106233 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932534.528527-UTR-F-serratus_M_contig864:106233..1062841622932534.528527-UTR-F-serratus_M_contig864:106233..106284Fucus serratus maleUTRF-serratus_M_contig864 106234..106284 -
1690964353.8448684-UTR-F-serratus_M_contig864:106233..1062841690964353.8448684-UTR-F-serratus_M_contig864:106233..106284Fucus serratus maleUTRF-serratus_M_contig864 106234..106284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig864.20015.1

>prot_F-serratus_M_contig864.20015.1 ID=prot_F-serratus_M_contig864.20015.1|Name=mRNA_F-serratus_M_contig864.20015.1|organism=Fucus serratus male|type=polypeptide|length=331bp
MDQSRSILTSIGQPLLVVSVLGKSLGTLLGPTEATKMVQTGLSGCECNVI
SSSPTVLLRAMDIVHPVGTIFLQTLEGAEEAYGTGSTYLAALCGTLSTAC
SHIQLQGVPANAIINGLRVAEDLCTGVLRDLSVPIKDVARGLQEASINST
SKGFRRGDGDIDDLEDKQQHREFSRNKSGVAFLTVLAAGLHHNASSGGAV
RTHERTEEETPVLQGLSLPAALAVDALSALGIPNVSGEESTAANDVAQLA
RVCTRLLVGPDSASSFVAPGAAVIDILPEERAEVGEAFARRRGSNVKQSG
KHQRVLPLPRAVATVFIEAVVVVLGDLSASA
back to top

mRNA from alignment at F-serratus_M_contig864:104158..106284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig864.20015.1 ID=mRNA_F-serratus_M_contig864.20015.1|Name=mRNA_F-serratus_M_contig864.20015.1|organism=Fucus serratus male|type=mRNA|length=2127bp|location=Sequence derived from alignment at F-serratus_M_contig864:104158..106284- (Fucus serratus male)
CTGTAGCCATTTCGTTATTCCGCCCAAAGCACTTGGGACGTGGGGTTCCA
CATGGACCAATCTCGATCCATACTGACGAGCATAGGTCAGCCGCTCCTGG
TGGTGTCCGTTCTAGGAAAATCTCTCGGTACTCTTCTGGGGCCGACGGAA
GCAACAAAGATGGTGCAAACGGGGCTAAGCGGTAATCCTGCCTCACGACG
GGCTCGCTGTTTGGGTCCTTTCTGGAGTACTTTCCTGAAAAATTTACCGT
GAAGTCGTTAGCATGTGCCTACTACTCGTAAGCATTTTTTTTTTGGTGAG
GGGCAAAGCTCGCAGAGAAAAACGCGGCAAGCATAGCGCACTACATGTTA
TACATCGGTCTGCCCACAAAGATCTAAGTGCCGGATCTTGGTCGTACGTC
CACCGACGTTAGACCGGAGCTCTGAGTCAACATTTTTTATAGCGTGGAAG
AGGGAATGGATCGCGATCTTTCTGGGGGTACCTTCAAGGGTGTAATTTTA
CCGAGATCTATCAACTCTCGAGAAGAATACGGCAACCAGTCGCGGGCATG
CATTGCTCACCGCATTCTGTATCGATCTGCACGCAGCGATCGAATCGCTC
GTCGCCATGAAATGAATTTAAACCTCAGGTTGCGAATGCAATGTGATATC
ATCAAGTCCAACGGTACTGCTGAGGGCAATGGATATCGTCCATCCTGTTG
GCACCATCTTCCTCCAAACTCTTGAGGTATTGACTATTTACTCATCACGC
GGCAGAGTTTGCGATGATACCCCTTTTAAATTTCGACGTACGAGTGTTAC
ATGTACTCGCCGTCTATGAAACGTTATTCAAAATGCATGTGGAAAATCTC
CAACACATGGAGCGTATCAACAGAAAACTTGATACTAACTTACAGTAGGT
AAAATAATGCCACAATCTGCGGGCTGATAGCGTTCGACCAGATACGTTTG
ACCGATTCAAAGATAACAAAAGTCCCACTAGACAACGCCCTCTCGATCTG
AACAGGGTGCGGAGGAAGCGTATGGCACGGGCTCAACATATCTGGCCGCC
CTGTGCGGTACCTTGAGCACAGCATGCTCCCACATCCAGCTACAAGGAGT
ACCTGCGAACGCTATCATCAACGGGCTTCGTGTGGCAGAAGACCTTTGTA
CTGGTGTTCTTCGCGATCTCTCTGTTCCCATCAAGGATGTTGCACGAGGA
CTTCAAGAAGCTAGTATTAATAGCACTAGCAAGGGATTCCGTCGTGGCGA
TGGTGATATCGACGATCTCGAGGACAAGCAGCAACACAGGGAATTCAGCA
GGAATAAATCCGGCGTTGCATTCCTGACAGTTCTCGCAGCAGGGCTGCAC
CACAACGCAAGCAGTGGTGGCGCCGTAAGGACTCACGAGAGGGTATGTGG
TCCAACAAGCGCGTAAAGGCTCTACGGATAGCTTAATAGCTCCGTCGTTG
GGTCTCGTAAGCTCCCATAATGTTCCCGTTGTGCAAATAACTCTGAGACC
GTAAGAGTTATTTTGACGGTTAACGTCGTTTAGGCTGATGTAATTATGTG
GATCCTGCATCTTTCATATCCACACTCCCTCCTTGCCGACGACACAAAAA
CCGCGCCGCTCACCCCTTCAGACTGAAGAAGAGACACCAGTTTTACAAGG
CCTCTCTCTTCCAGCGGCATTGGCTGTCGATGCGTTGTCGGCGCTGGGAA
TACCAAACGTATCCGGCGAGGAAAGCACTGCCGCAAACGATGTTGCACAA
CTTGCGCGCGTGTGCACGCGACTCCTGGTGGGGCCAGATTCAGCGTCAAG
CTTCGTTGCCCCAGGAGCAGCTGTCATCGACATTCTTCCAGAGGAAAGAG
CCGAAGTAGGGGAAGCCTTTGCTCGCCGACGTGGTTCCAATGTGAAGCAA
TCGGGAAAACATCAACGGTAAGGTATCCCTCTCCAAGAAAGTAATGCGGA
CTCCACAAGCATTAGTCACATGTTTCCTGCTCTAACCACTACTGTAATAT
ATGACAACCATGTTCTGGACCGTGTGCTCGTGATGTTCGTTGAAGCGTTC
TCCCGCTTCCAAGAGCGGTTGCGACTGTATTTATAGAAGCCGTTGTGGTC
GTGCTTGGCGATCTGTCGGCTTCTGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig864:104158..106284-

>mRNA_F-serratus_M_contig864.20015.1 ID=mRNA_F-serratus_M_contig864.20015.1|Name=mRNA_F-serratus_M_contig864.20015.1|organism=Fucus serratus male|type=CDS|length=1986bp|location=Sequence derived from alignment at F-serratus_M_contig864:104158..106284- (Fucus serratus male)
ATGGACCAATCTCGATCCATACTGACGAGCATAGGTCAGCCGCTCCTGGT
GGTGTCCGTTCTAGGAAAATCTCTCGGTACTCTTCTGGGGCCGACGGAAG
CAACAAAGATGGTGCAAACGGGGCTAAGCGATGGACCAATCTCGATCCAT
ACTGACGAGCATAGGTCAGCCGCTCCTGGTGGTGTCCGTTCTAGGAAAAT
CTCTCGGTACTCTTCTGGGGCCGACGGAAGCAACAAAGATGGTGCAAACG
GGGCTAAGCGGTTGCGAATGCAATGTGATATCATCAAGTCCAACGGTACT
GCTGAGGGCAATGGATATCGTCCATCCTGTTGGCACCATCTTCCTCCAAA
CTCTTGAGGTTGCGAATGCAATGTGATATCATCAAGTCCAACGGTACTGC
TGAGGGCAATGGATATCGTCCATCCTGTTGGCACCATCTTCCTCCAAACT
CTTGAGGGTGCGGAGGAAGCGTATGGCACGGGCTCAACATATCTGGCCGC
CCTGTGCGGTACCTTGAGCACAGCATGCTCCCACATCCAGCTACAAGGAG
TACCTGCGAACGCTATCATCAACGGGCTTCGTGTGGCAGAAGACCTTTGT
ACTGGTGTTCTTCGCGATCTCTCTGTTCCCATCAAGGATGTTGCACGAGG
ACTTCAAGAAGCTAGTATTAATAGCACTAGCAAGGGATTCCGTCGTGGCG
ATGGTGATATCGACGATCTCGAGGACAAGCAGCAACACAGGGAATTCAGC
AGGAATAAATCCGGCGTTGCATTCCTGACAGTTCTCGCAGCAGGGCTGCA
CCACAACGCAAGCAGTGGTGGCGCCGTAAGGACTCACGAGAGGGGTGCGG
AGGAAGCGTATGGCACGGGCTCAACATATCTGGCCGCCCTGTGCGGTACC
TTGAGCACAGCATGCTCCCACATCCAGCTACAAGGAGTACCTGCGAACGC
TATCATCAACGGGCTTCGTGTGGCAGAAGACCTTTGTACTGGTGTTCTTC
GCGATCTCTCTGTTCCCATCAAGGATGTTGCACGAGGACTTCAAGAAGCT
AGTATTAATAGCACTAGCAAGGGATTCCGTCGTGGCGATGGTGATATCGA
CGATCTCGAGGACAAGCAGCAACACAGGGAATTCAGCAGGAATAAATCCG
GCGTTGCATTCCTGACAGTTCTCGCAGCAGGGCTGCACCACAACGCAAGC
AGTGGTGGCGCCGTAAGGACTCACGAGAGGACTGAAGAAGAGACACCAGT
TTTACAAGGCCTCTCTCTTCCAGCGGCATTGGCTGTCGATGCGTTGTCGG
CGCTGGGAATACCAAACGTATCCGGCGAGGAAAGCACTGCCGCAAACGAT
GTTGCACAACTTGCGCGCGTGTGCACGCGACTCCTGGTGGGGCCAGATTC
AGCGTCAAGCTTCGTTGCCCCAGGAGCAGCTGTCATCGACATTCTTCCAG
AGGAAAGAGCCGAAGTAGGGGAAGCCTTTGCTCGCCGACGTGGTTCCAAT
GTGAAGCAATCGGGAAAACATCAACGACTGAAGAAGAGACACCAGTTTTA
CAAGGCCTCTCTCTTCCAGCGGCATTGGCTGTCGATGCGTTGTCGGCGCT
GGGAATACCAAACGTATCCGGCGAGGAAAGCACTGCCGCAAACGATGTTG
CACAACTTGCGCGCGTGTGCACGCGACTCCTGGTGGGGCCAGATTCAGCG
TCAAGCTTCGTTGCCCCAGGAGCAGCTGTCATCGACATTCTTCCAGAGGA
AAGAGCCGAAGTAGGGGAAGCCTTTGCTCGCCGACGTGGTTCCAATGTGA
AGCAATCGGGAAAACATCAACGCGTTCTCCCGCTTCCAAGAGCGGTTGCG
ACTGTATTTATAGAAGCCGTTGTGGTCGTGCTTGGCGATCTGTCGGCTTC
TGCGCGTTCTCCCGCTTCCAAGAGCGGTTGCGACTGTATTTATAGAAGCC
GTTGTGGTCGTGCTTGGCGATCTGTCGGCTTCTGCG
back to top