mRNA_F-serratus_M_contig8630.20010.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8630.20010.1
Unique NamemRNA_F-serratus_M_contig8630.20010.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: D8LM77_ECTSI (Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM77_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 4.020e-41
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            V RSQIVFEVKPWEAGADLK LF+KI++ +IDGL WGEA+KLVPVAFGVKKLVLSCVV D+KVGV+DITD IEKFEDEVQSVDMTTMNRL
Sbjct:  760 VDRSQIVFEVKPWEAGADLKGLFDKIRKTEIDGLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A6H5KBH2_9PHAE (EF1_GNE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.480e-40
Identity = 73/90 (81.11%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            V RSQIVFEVKPW+   DLK LF KI + KI+GL WGEA+KLVPVAFGVKKLVLSCVVED KVGV+DITD IE FEDEVQSVDMTTMNRL
Sbjct:  143 VDRSQIVFEVKPWDTETDLKGLFAKICKTKIEGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEGFEDEVQSVDMTTMNRL 232
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A6H5JFV9_9PHAE (EF1_GNE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFV9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.790e-39
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    7 RSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            RSQIVFEVKPW+   DLK LF KI   +IDGL WGEA+KLVPVAFGVKKLVLSCVVED KVGV+DITD IE FED VQSVDMTTMNRL
Sbjct:   95 RSQIVFEVKPWDTETDLKELFGKICATEIDGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A7S2UXP5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.570e-32
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            V RSQ++FEVKPWEA  DLKSLF KI   K +GL+WGE Y++ PVAFG+ KLV+SCV+ D  VG+DD+TD IE  EDEVQSVD+ TMN++
Sbjct:  143 VERSQLIFEVKPWEADQDLKSLFAKITALKKEGLSWGEGYEIKPVAFGIMKLVMSCVIVDDLVGMDDVTDPIEAMEDEVQSVDVLTMNKM 232
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A6G0WMX9_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMX9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.530e-31
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            + RSQ+V EVKPWEA  DL+ L  KIKE ++DGL WGE +KLVPVAFG+KKL++ C++ D KV +DDIT+ IE FED VQSVD+ +MN++
Sbjct:  100 IERSQVVIEVKPWEAETDLEELAAKIKEVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 189
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A485L9S1_9STRA (Aste57867_18212 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9S1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.940e-30
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            + RSQ+V EVKPWEA  DL+ L  +IK  +IDGL+WGE +KLVPVAFG+KKL++ C++ D KV +DDITD IE FED VQSVD+ +MN++
Sbjct:   98 IERSQVVIEVKPWEAETDLEELAAQIKALEIDGLSWGEGHKLVPVAFGIKKLLVQCIIVDDKVLLDDITDAIEAFEDYVQSVDIASMNKV 187
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A6G0WJF4_9STRA (EF1_GNE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJF4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.000e-30
Identity = 54/90 (60.00%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            + RSQ+V EVKPWEA  DL+ L  KIK+ ++DGL WGE +KLVPVAFG+KKL++ C++ D KV +DDIT+ IE FED VQSVD+ +MN++
Sbjct:  140 IERSQVVIEVKPWEAETDLEELAAKIKQVEVDGLTWGEGHKLVPVAFGIKKLLIQCIIIDDKVLMDDITEAIEAFEDYVQSVDIASMNKM 229
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A485LAV1_9STRA (Aste57867_18076 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAV1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.830e-30
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            + RSQ+V EVKPWEA  DL+ L  KIK  ++DGL WGE +KLVPVAFG+KKL++ C++ D KV +DDITD IE FED VQSVD+ +MN++
Sbjct:  140 IERSQVVIEVKPWEAETDLEELAVKIKALEVDGLTWGEGHKLVPVAFGIKKLLVQCIIIDDKVLMDDITDAIESFEDYVQSVDIASMNKM 229
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: A0A8J5I4Y8_9STRA (EF1_GNE domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5I4Y8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.180e-30
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            V RSQ+V EVKPWEA  DL+ L  KIK   +DGL WGE +KLVPVAFG+KKL++ CV+ D  V +DDITD IE FED VQSVD+ +MN+L
Sbjct:   75 VERSQVVIEVKPWEAETDLEELAAKIKALPVDGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 164
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BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Match: M4B847_HYAAE (EF1_GNE domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4B847_HYAAE)

HSP 1 Score: 113 bits (283), Expect = 6.120e-30
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVKKLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL 270
            V RSQ+V EVKPWEA  DL+ L  KIK   I+GL WGE +KLVPVAFG+KKL++ CV+ D  V +DDITD IE FED VQSVD+ +MN+L
Sbjct:   89 VERSQVVIEVKPWEAETDLEELAAKIKALPIEGLTWGEGHKLVPVAFGIKKLLVQCVIIDELVLMDDITDAIESFEDYVQSVDVASMNKL 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8630.20010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM77_ECTSI4.020e-4185.56Lysine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A6H5KBH2_9PHAE3.480e-4081.11EF1_GNE domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5JFV9_9PHAE2.790e-3980.68EF1_GNE domain-containing protein n=3 Tax=Ectocarp... [more]
A0A7S2UXP5_9STRA9.570e-3264.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0WMX9_9STRA2.530e-3161.11EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A485L9S1_9STRA1.940e-3061.11Aste57867_18212 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0WJF4_9STRA2.000e-3060.00EF1_GNE domain-containing protein n=1 Tax=Aphanomy... [more]
A0A485LAV1_9STRA2.830e-3061.11Aste57867_18076 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J5I4Y8_9STRA4.180e-3063.33EF1_GNE domain-containing protein n=1 Tax=Phytopht... [more]
M4B847_HYAAE6.120e-3063.33EF1_GNE domain-containing protein n=2 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8630contigF-serratus_M_contig8630:4112..4911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.5e-35
Seed eggNOG ortholog2880.D8LM77
Preferred nameCARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01868,ko:K01873,ko:K01875,ko:K01883,ko:K03232,ko:K04567,ko:K15410
KEGG ReactionR02918,R03650,R03658,R03662,R03663,R03665,R08218
KEGG Pathwayko00970,ko05168,map00970,map05168
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005853,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006414,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046983,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGsCOG1190@1,COG2092@1,KOG1668@2759,KOG1885@2759
EC6.1.1.1,6.1.1.11,6.1.1.16,6.1.1.3,6.1.1.6,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03029
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932533.7129185-CDS-F-serratus_M_contig8630:4111..42971622932533.7129185-CDS-F-serratus_M_contig8630:4111..4297Fucus serratus maleCDSF-serratus_M_contig8630 4112..4297 +
1690964353.4513717-CDS-F-serratus_M_contig8630:4111..42971690964353.4513717-CDS-F-serratus_M_contig8630:4111..4297Fucus serratus maleCDSF-serratus_M_contig8630 4112..4297 +
1622932533.7302346-CDS-F-serratus_M_contig8630:4824..49111622932533.7302346-CDS-F-serratus_M_contig8630:4824..4911Fucus serratus maleCDSF-serratus_M_contig8630 4825..4911 +
1690964353.4654157-CDS-F-serratus_M_contig8630:4824..49111690964353.4654157-CDS-F-serratus_M_contig8630:4824..4911Fucus serratus maleCDSF-serratus_M_contig8630 4825..4911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8630.20010.1prot_F-serratus_M_contig8630.20010.1Fucus serratus malepolypeptideF-serratus_M_contig8630 4112..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8630.20010.1

>prot_F-serratus_M_contig8630.20010.1 ID=prot_F-serratus_M_contig8630.20010.1|Name=mRNA_F-serratus_M_contig8630.20010.1|organism=Fucus serratus male|type=polypeptide|length=91bp
VVRSQIVFEVKPWEAGADLKSLFEKIKEEKIDGLAWGEAYKLVPVAFGVK
KLVLSCVVEDAKVGVDDITDCIEKFEDEVQSVDMTTMNRL*
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mRNA from alignment at F-serratus_M_contig8630:4112..4911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8630.20010.1 ID=mRNA_F-serratus_M_contig8630.20010.1|Name=mRNA_F-serratus_M_contig8630.20010.1|organism=Fucus serratus male|type=mRNA|length=800bp|location=Sequence derived from alignment at F-serratus_M_contig8630:4112..4911+ (Fucus serratus male)
GTTGTCAGGTCCCAGATCGTGTTCGAGGTAAAGCCGTGGGAGGCGGGCGC
CGACCTCAAGAGTCTTTTCGAGAAGATCAAGGAGGAGAAGATTGACGGCC
TCGCGTGGGGTGAGGCCTACAAGCTGGTTCCCGTGGCATTCGGAGTGAAG
AAGCTCGTCTTGTCCTGCGTGGTCGAAGACGCCAAGGTGATTATTTAGAG
ACTTGTGTGGGGATGGAAGGGCGGAGTGTGTGAGTGAGGATGTTTTTAGG
ATTTTGTGCCTGGCCCGTGCTATCGGAGGTTCGCCTATTGCTCCGAGTAC
GCTCTCGCAGATTGGTTCCTTTTCAGGACACGAATTTCTCGGTACACGAA
TGGGGTTACTTTTGGAATCGTCTCCCCGCGCGGGGTTGCGCGGGCACAAC
AGAAACGATGACGCTGCAGAAAAAAAAGAAAAATCTGCCTTTGTGCGCTG
TCCGCCTTGCTTTCAGAGTATCTCAAGTCGTGATCACCTTGCGCTTTGCG
GAAACGTTATTGGTTTGCATGTTTTGCATGTTTTTTTGGAGGAGGAAGGG
GAGGAGGTAGGGAAAAGGGTCCAAGAAATTAACGTTTGATTAATATTTCT
TCTTCTAGTTTGTGCCCATCACCTTTATCTTAGCGTAGCCGACCGCTTTC
TATCTAATACCCCTCGTGTGTGTGTGTGTCGTTTGGCTTTTCGCTGTTTG
GCGGCCGCCGCAGGTTGGCGTCGACGACATCACCGACTGCATCGAAAAAT
TCGAAGACGAAGTACAGTCTGTAGACATGACTACGATGAACCGCCTCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8630:4112..4911+

>mRNA_F-serratus_M_contig8630.20010.1 ID=mRNA_F-serratus_M_contig8630.20010.1|Name=mRNA_F-serratus_M_contig8630.20010.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig8630:4112..4911+ (Fucus serratus male)
GTTGTCAGGTCCCAGATCGTGTTCGAGGTAAAGCCGTGGGAGGCGGGCGC
CGACCTCAAGAGTCTTTTCGAGAAGATCAAGGAGGAGAAGATTGACGGCC
TCGCGTGGGGTGAGGCCTACAAGCTGGTTCCCGTGGCATTCGGAGTGAAG
AAGCTCGTCTTGTCCTGCGTGGTCGAAGACGCCAAGGTTGTCAGGTCCCA
GATCGTGTTCGAGGTAAAGCCGTGGGAGGCGGGCGCCGACCTCAAGAGTC
TTTTCGAGAAGATCAAGGAGGAGAAGATTGACGGCCTCGCGTGGGGTGAG
GCCTACAAGCTGGTTCCCGTGGCATTCGGAGTGAAGAAGCTCGTCTTGTC
CTGCGTGGTCGAAGACGCCAAGGTTGGCGTCGACGACATCACCGACTGCA
TCGAAAAATTCGAAGACGAAGTACAGTCTGTAGACATGACTACGATGAAC
CGCCTCTGAGTTGGCGTCGACGACATCACCGACTGCATCGAAAAATTCGA
AGACGAAGTACAGTCTGTAGACATGACTACGATGAACCGCCTCTGA
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