mRNA_F-serratus_M_contig861.20003.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig861.20003.1
Unique NamemRNA_F-serratus_M_contig861.20003.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig861.20003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig861contigF-serratus_M_contig861:329393..329964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size574
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932532.3256204-UTR-F-serratus_M_contig861:329392..3294091622932532.3256204-UTR-F-serratus_M_contig861:329392..329409Fucus serratus maleUTRF-serratus_M_contig861 329393..329409 +
1690964352.7379425-UTR-F-serratus_M_contig861:329392..3294091690964352.7379425-UTR-F-serratus_M_contig861:329392..329409Fucus serratus maleUTRF-serratus_M_contig861 329393..329409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932532.3410742-CDS-F-serratus_M_contig861:329409..3299641622932532.3410742-CDS-F-serratus_M_contig861:329409..329964Fucus serratus maleCDSF-serratus_M_contig861 329410..329964 +
1690964352.7502801-CDS-F-serratus_M_contig861:329409..3299641690964352.7502801-CDS-F-serratus_M_contig861:329409..329964Fucus serratus maleCDSF-serratus_M_contig861 329410..329964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig861.20003.1prot_F-serratus_M_contig861.20003.1Fucus serratus malepolypeptideF-serratus_M_contig861 329410..329964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig861.20003.1

>prot_F-serratus_M_contig861.20003.1 ID=prot_F-serratus_M_contig861.20003.1|Name=mRNA_F-serratus_M_contig861.20003.1|organism=Fucus serratus male|type=polypeptide|length=185bp
MDGPKKTGSDGTGSDDRGKKPAGGDIIVERGTPQLNVQELGHEQHEHEWQ
EAISELEVETQGTLSDLGEDTQEVLPEDEREEGGAEARSASLEGPTVPAL
RKLAIDGNVPPILSSRTRSRRPHTGVEGEALQCILPTIEAEEENGMEDVL
SCDGGGQMALQATLDVSEPRNRRQAMESHEWDEWR
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mRNA from alignment at F-serratus_M_contig861:329393..329964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig861.20003.1 ID=mRNA_F-serratus_M_contig861.20003.1|Name=mRNA_F-serratus_M_contig861.20003.1|organism=Fucus serratus male|type=mRNA|length=572bp|location=Sequence derived from alignment at F-serratus_M_contig861:329393..329964+ (Fucus serratus male)
GGCAGGCCGTTCAGTGGATGGATGGGCCTAAAAAGACAGGGAGTGACGGC
ACTGGCAGTGACGACCGCGGCAAGAAGCCGGCGGGAGGGGACATCATTGT
TGAGAGAGGTACCCCGCAGCTCAACGTTCAAGAGTTAGGACATGAACAAC
ACGAGCACGAGTGGCAGGAGGCGATTTCGGAACTCGAAGTGGAGACGCAG
GGGACGTTATCAGATCTTGGAGAGGATACGCAGGAAGTGCTTCCGGAAGA
CGAGCGTGAGGAAGGGGGAGCGGAAGCTAGGTCAGCAAGTTTGGAGGGAC
CGACCGTACCCGCGCTCCGGAAACTCGCCATCGACGGCAATGTACCGCCC
ATACTGTCATCGCGTACCAGGAGTCGGAGACCCCACACCGGTGTGGAGGG
GGAAGCGTTGCAGTGTATCCTGCCGACGATTGAGGCGGAAGAAGAAAACG
GCATGGAGGATGTGTTATCATGTGACGGCGGAGGTCAGATGGCTTTGCAA
GCGACGCTAGATGTATCAGAACCGAGGAATCGGCGACAGGCGATGGAATC
GCACGAATGGGACGAATGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig861:329393..329964+

>mRNA_F-serratus_M_contig861.20003.1 ID=mRNA_F-serratus_M_contig861.20003.1|Name=mRNA_F-serratus_M_contig861.20003.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig861:329393..329964+ (Fucus serratus male)
ATGGATGGGCCTAAAAAGACAGGGAGTGACGGCACTGGCAGTGACGACCG
CGGCAAGAAGCCGGCGGGAGGGGACATCATTGTTGAGAGAGGTACCCCGC
AGCTCAACGTTCAAGAGTTAGGACATGAACAACACGAGCACGAGTGGCAG
GAGGCGATTTCGGAACTCGAAGTGGAGACGCAGGGGACGTTATCAGATCT
TGGAGAGGATACGCAGGAAGTGCTTCCGGAAGACGAGCGTGAGGAAGGGG
GAGCGGAAGCTAGGTCAGCAAGTTTGGAGGGACCGACCGTACCCGCGCTC
CGGAAACTCGCCATCGACGGCAATGTACCGCCCATACTGTCATCGCGTAC
CAGGAGTCGGAGACCCCACACCGGTGTGGAGGGGGAAGCGTTGCAGTGTA
TCCTGCCGACGATTGAGGCGGAAGAAGAAAACGGCATGGAGGATGTGTTA
TCATGTGACGGCGGAGGTCAGATGGCTTTGCAAGCGACGCTAGATGTATC
AGAACCGAGGAATCGGCGACAGGCGATGGAATCGCACGAATGGGACGAAT
GGCGGATGGATGGGCCTAAAAAGACAGGGAGTGACGGCACTGGCAGTGAC
GACCGCGGCAAGAAGCCGGCGGGAGGGGACATCATTGTTGAGAGAGGTAC
CCCGCAGCTCAACGTTCAAGAGTTAGGACATGAACAACACGAGCACGAGT
GGCAGGAGGCGATTTCGGAACTCGAAGTGGAGACGCAGGGGACGTTATCA
GATCTTGGAGAGGATACGCAGGAAGTGCTTCCGGAAGACGAGCGTGAGGA
AGGGGGAGCGGAAGCTAGGTCAGCAAGTTTGGAGGGACCGACCGTACCCG
CGCTCCGGAAACTCGCCATCGACGGCAATGTACCGCCCATACTGTCATCG
CGTACCAGGAGTCGGAGACCCCACACCGGTGTGGAGGGGGAAGCGTTGCA
GTGTATCCTGCCGACGATTGAGGCGGAAGAAGAAAACGGCATGGAGGATG
TGTTATCATGTGACGGCGGAGGTCAGATGGCTTTGCAAGCGACGCTAGAT
GTATCAGAACCGAGGAATCGGCGACAGGCGATGGAATCGCACGAATGGGA
CGAATGGCGG
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