mRNA_F-serratus_M_contig86.19985.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19985.1
Unique NamemRNA_F-serratus_M_contig86.19985.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig86.19985.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.060e-25
Identity = 63/104 (60.58%), Postives = 71/104 (68.27%), Query Frame = 2 
Query:   29 VLPAGLAEVMWRVARASMGARDWDTAILALRGL-ATDREREGNRSRR--FCYYFATFP-GKNAPGPSPGPGLARVLRALVYCQLRRGLFREALETTRVVLGEGN 328
            VLP  LAEVMWRVARASM ARDW TAILAL GL A +    G  S R    YYFA+F  G  A     GPG ARVLRAL Y Q++RGL+R+ALET   VLG+G+
Sbjct:  646 VLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLAYYFASFAKGGGARASRRGPGRARVLRALAYSQIQRGLYRDALETVGTVLGDGS 749
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BLAST of mRNA_F-serratus_M_contig86.19985.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.330e-23
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:   26 MVLPAGLAEVMWRVARASMGARDWDTAILALRGL-ATDREREGNRSRR--FCYYFATFPGKNAPGPSP-GPGLARVLRALVYCQLRRGLFREALETTRVVLGEGN 328
            +VLP   AEVMWRVARASM A+DW TAILAL GL A +   +G  S R    YYFA+F        S  GPG ARVLRAL + Q++RGL+R+ALET R+VLG+G+
Sbjct:  621 VVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVAAEATADGVASSREGLAYYFASFAKDGGARASRRGPGRARVLRALAFSQIQRGLYRDALETVRMVLGDGS 725
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1V4_9PHAE6.060e-2560.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU3_ECTSI1.330e-2357.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:483353..484577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size383
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19985.1prot_F-serratus_M_contig86.19985.1Fucus serratus malepolypeptideF-serratus_M_contig86 483366..484577 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932527.7185745-UTR-F-serratus_M_contig86:483352..4833651622932527.7185745-UTR-F-serratus_M_contig86:483352..483365Fucus serratus maleUTRF-serratus_M_contig86 483353..483365 +
1690964350.663157-UTR-F-serratus_M_contig86:483352..4833651690964350.663157-UTR-F-serratus_M_contig86:483352..483365Fucus serratus maleUTRF-serratus_M_contig86 483353..483365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932527.7357073-CDS-F-serratus_M_contig86:483365..4835081622932527.7357073-CDS-F-serratus_M_contig86:483365..483508Fucus serratus maleCDSF-serratus_M_contig86 483366..483508 +
1690964350.6754868-CDS-F-serratus_M_contig86:483365..4835081690964350.6754868-CDS-F-serratus_M_contig86:483365..483508Fucus serratus maleCDSF-serratus_M_contig86 483366..483508 +
1622932527.7583077-CDS-F-serratus_M_contig86:484351..4845771622932527.7583077-CDS-F-serratus_M_contig86:484351..484577Fucus serratus maleCDSF-serratus_M_contig86 484352..484577 +
1690964350.6857626-CDS-F-serratus_M_contig86:484351..4845771690964350.6857626-CDS-F-serratus_M_contig86:484351..484577Fucus serratus maleCDSF-serratus_M_contig86 484352..484577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19985.1

>prot_F-serratus_M_contig86.19985.1 ID=prot_F-serratus_M_contig86.19985.1|Name=mRNA_F-serratus_M_contig86.19985.1|organism=Fucus serratus male|type=polypeptide|length=123bp
MARKMVLPAGLAEVMWRVARASMGARDWDTAILALRGLATDREREGNRSR
RFCYYFATFPGKNAPGPSPGPGLARVLRALVYCQLRRGLFREALETTRVV
LGEGNCQEESRLAGEDAAMLMFR
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mRNA from alignment at F-serratus_M_contig86:483353..484577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19985.1 ID=mRNA_F-serratus_M_contig86.19985.1|Name=mRNA_F-serratus_M_contig86.19985.1|organism=Fucus serratus male|type=mRNA|length=1225bp|location=Sequence derived from alignment at F-serratus_M_contig86:483353..484577+ (Fucus serratus male)
CGGCAGCGGAGGCATGGCGAGAAAAATGGTGCTGCCGGCGGGGCTCGCGG
AGGTCATGTGGCGGGTGGCGAGGGCTTCGATGGGGGCGCGTGACTGGGAC
ACGGCGATCCTGGCGCTGCGCGGTCTTGCCACCGATAGAGAACGAGAAGG
AAACAGGTAAGTTTTTGATTTTGTTTTTTGTGATGCGTTACTTTCTCATT
TTAGCGCCCCCATAAATCACCACCCTCCGTCGTCCAACTGGACGGACGAA
AGTTATTTTTGTTTTTCGTGGCGGGGACACGTGAATGTTTCTCGGTCGAA
ATAGAAAAGTTTCGTTAGCACCAAGTCAGAGGTCGAAGGGGGACGGGGCG
TTAGGGAGTCTGTGTTTACTCTCTTGACCCCGCTCCCCGTCCTTTCGTCA
GTCGCGTTTACATCCGTCGCTGCGCCGCCGGTGGAGGGGGGGACCCGTGA
ATGTTTCTCGGTCGAAATAGAAAAGTTTCGCTAACACGAAGTCAGGGGTC
GAAGGGGGACGGAGCGCTAGGGGGTCTGTATTGACTCTCTTGACCCTGCT
CCCCGTCCTTTTGTCGGTCGCGTTTATAGCCGTCGCTGCGCCGCCGGTGG
ATGAGCGCTTACTTGCCCCGGCAGCCGCGCCGCACGCCCGGCATTCAGAC
CGCCGTCGTTTCCGCTTTCCCGTCGACTTTACTCTCGCGGTGGAAATCGC
TACGGTAATAAACACCGCGAAAACACCCCCTCGGTAGTTCTCCCTGAGAA
CCACGGCCGCTCTCGGCGAGGCGGCGCCACGCCTTGAGCGTGTTGCGATG
GGAATTCTCGTCACCTTCCTCCGTTTCTTTCGATTTCCCCCCTGCCGACA
TCCAACCCCCCCCCCCCCCCCTCGCCCGCCTCCGTGAGACGTTTTGTGAA
AACAACATAAAATCGGGTACTTTCATATTTGATACTCCTGGTAAACCTAC
TTATTCTCCCGGACATGCACGACACTTCCGTTCATAACTTCCTCTTCAGA
AGCCGGCGGTTCTGCTACTACTTTGCGACCTTTCCGGGCAAGAACGCCCC
AGGGCCATCTCCCGGTCCCGGCCTCGCCCGCGTTCTTCGAGCCCTGGTGT
ACTGTCAACTTCGACGTGGTCTGTTCCGGGAGGCCCTGGAGACTACGCGG
GTGGTTCTTGGCGAGGGTAACTGTCAAGAGGAATCCCGGTTGGCGGGCGA
AGACGCGGCGATGCTGATGTTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig86:483353..484577+

>mRNA_F-serratus_M_contig86.19985.1 ID=mRNA_F-serratus_M_contig86.19985.1|Name=mRNA_F-serratus_M_contig86.19985.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig86:483353..484577+ (Fucus serratus male)
ATGGCGAGAAAAATGGTGCTGCCGGCGGGGCTCGCGGAGGTCATGTGGCG
GGTGGCGAGGGCTTCGATGGGGGCGCGTGACTGGGACACGGCGATCCTGG
CGCTGCGCGGTCTTGCCACCGATAGAGAACGAGAAGGAAACAGATGGCGA
GAAAAATGGTGCTGCCGGCGGGGCTCGCGGAGGTCATGTGGCGGGTGGCG
AGGGCTTCGATGGGGGCGCGTGACTGGGACACGGCGATCCTGGCGCTGCG
CGGTCTTGCCACCGATAGAGAACGAGAAGGAAACAGAAGCCGGCGGTTCT
GCTACTACTTTGCGACCTTTCCGGGCAAGAACGCCCCAGGGCCATCTCCC
GGTCCCGGCCTCGCCCGCGTTCTTCGAGCCCTGGTGTACTGTCAACTTCG
ACGTGGTCTGTTCCGGGAGGCCCTGGAGACTACGCGGGTGGTTCTTGGCG
AGGGTAACTGTCAAGAGGAATCCCGGTTGGCGGGCGAAGACGCGGCGATG
CTGATGTTTCGGAAGCCGGCGGTTCTGCTACTACTTTGCGACCTTTCCGG
GCAAGAACGCCCCAGGGCCATCTCCCGGTCCCGGCCTCGCCCGCGTTCTT
CGAGCCCTGGTGTACTGTCAACTTCGACGTGGTCTGTTCCGGGAGGCCCT
GGAGACTACGCGGGTGGTTCTTGGCGAGGGTAACTGTCAAGAGGAATCCC
GGTTGGCGGGCGAAGACGCGGCGATGCTGATGTTTCGG
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