mRNA_F-serratus_M_contig86.19984.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19984.1
Unique NamemRNA_F-serratus_M_contig86.19984.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig86.19984.1 vs. uniprot
Match: A0A6H5L0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y1_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.850e-16
Identity = 53/108 (49.07%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:   81 RNGDPAAHLAKLRDVERLMDAEMGFAPGGREEAIAGSSAVSSSIRRGGEARGKDTAAFVTPP------------TSKKIATTAFLYVRHKRVLGCVVAQRIKTARRVL 368
            R GDPA HLAKLR+VERLMDA+MGFAPG R++A++  SA S  +  G                            +K    TAFLYVR KRVLGCV+AQRI TARR +
Sbjct:   22 REGDPAPHLAKLREVERLMDADMGFAPGARDDAVSLGSA-SPLLGEGXXXXXXXXXXXXXXXXXXXXXXXXVGAAAKTKGVTAFLYVREKRVLGCVIAQRIDTARRAV 128
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BLAST of mRNA_F-serratus_M_contig86.19984.1 vs. uniprot
Match: D7FTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-8
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = -2 
Query:  234 RNGDPAAHLAKLRDVERLMDAEMGFAPGGREEAIAGSSAVSSSIR 368
            R GDPA HLAKLR+VERLMDA+MGFAPG R++AI+  S + ++ R
Sbjct:  167 REGDPAPHLAKLREVERLMDADMGFAPGARDDAISLGSGIDTARR 211
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BLAST of mRNA_F-serratus_M_contig86.19984.1 vs. uniprot
Match: A0A4D9DA82_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA82_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.300e-5
Identity = 35/92 (38.04%), Postives = 45/92 (48.91%), Query Frame = -2 
Query:   93 RNGDPAAHLAKLRDVERLMDAEMGFAPGGREEAIAGSSAVSSSIRRGGEARGKDTAAFVTPPTSKKIATTAFLYVRHKRVLGCVVAQRIKTA 368
            R GD  A LAK+R+V+R+MD EMGF P                +R G           V   T K     AFLYV  +RV+GCV+A++I  A
Sbjct:  124 RPGDGTAPLAKMREVKRVMDQEMGFVP----------------LREGD---------MVLKTTEK-----AFLYVHGRRVVGCVIAEKINAA 185
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Y1_9PHAE2.850e-1649.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU4_ECTSI1.390e-864.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9DA82_9STRA5.300e-538.04Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:456966..457335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932522.6170676-CDS-F-serratus_M_contig86:456965..4573341622932522.6170676-CDS-F-serratus_M_contig86:456965..457334Fucus serratus maleCDSF-serratus_M_contig86 456966..457334 +
1690964349.0219762-CDS-F-serratus_M_contig86:456965..4573341690964349.0219762-CDS-F-serratus_M_contig86:456965..457334Fucus serratus maleCDSF-serratus_M_contig86 456966..457334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19984.1prot_F-serratus_M_contig86.19984.1Fucus serratus malepolypeptideF-serratus_M_contig86 456966..457334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19984.1

>prot_F-serratus_M_contig86.19984.1 ID=prot_F-serratus_M_contig86.19984.1|Name=mRNA_F-serratus_M_contig86.19984.1|organism=Fucus serratus male|type=polypeptide|length=123bp
STAASIAPPVEAFIEALCPPAFRAPSWSTLRAVLMRCATTHPKTRLWRTY
KNAVVAIFLEVGGVTNAAVSFPRASPPLLMEELTAEDPAMASSLPPGANP
ISASIRRSTSLSFARCAAGSPLR
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mRNA from alignment at F-serratus_M_contig86:456966..457335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19984.1 ID=mRNA_F-serratus_M_contig86.19984.1|Name=mRNA_F-serratus_M_contig86.19984.1|organism=Fucus serratus male|type=mRNA|length=370bp|location=Sequence derived from alignment at F-serratus_M_contig86:456966..457335+ (Fucus serratus male)
TCCACAGCCGCATCAATAGCACCACCGGTAGAGGCGTTCATTGAGGCACT
GTGCCCCCCAGCGTTTCGAGCTCCCTCCTGGAGCACTCTTCGGGCGGTCT
TGATGCGCTGCGCCACGACGCACCCCAAGACCCGCTTATGGCGGACGTAC
AAGAACGCCGTCGTTGCGATTTTTTTGGAAGTCGGCGGCGTGACAAATGC
CGCCGTATCTTTTCCCCGCGCCTCGCCACCTCTCCTGATGGAGGAGCTTA
CGGCGGAGGACCCCGCGATGGCTTCCTCCCTCCCCCCGGGCGCAAACCCC
ATTTCCGCATCCATCAGGCGCTCCACATCTCTGAGTTTTGCCAGGTGCGC
GGCCGGGTCGCCGTTACGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig86:456966..457335+

>mRNA_F-serratus_M_contig86.19984.1 ID=mRNA_F-serratus_M_contig86.19984.1|Name=mRNA_F-serratus_M_contig86.19984.1|organism=Fucus serratus male|type=CDS|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig86:456966..457335+ (Fucus serratus male)
TCCACAGCCGCATCAATAGCACCACCGGTAGAGGCGTTCATTGAGGCACT
GTGCCCCCCAGCGTTTCGAGCTCCCTCCTGGAGCACTCTTCGGGCGGTCT
TGATGCGCTGCGCCACGACGCACCCCAAGACCCGCTTATGGCGGACGTAC
AAGAACGCCGTCGTTGCGATTTTTTTGGAAGTCGGCGGCGTGACAAATGC
CGCCGTATCTTTTCCCCGCGCCTCGCCACCTCTCCTGATGGAGGAGCTTA
CGGCGGAGGACCCCGCGATGGCTTCCTCCCTCCCCCCGGGCGCAAACCCC
ATTTCCGCATCCATCAGGCGCTCCACATCTCTGAGTTTTGCCAGGTGCGC
GGCCGGGTCGCCGTTACGGTCCACAGCCGCATCAATAGCACCACCGGTAG
AGGCGTTCATTGAGGCACTGTGCCCCCCAGCGTTTCGAGCTCCCTCCTGG
AGCACTCTTCGGGCGGTCTTGATGCGCTGCGCCACGACGCACCCCAAGAC
CCGCTTATGGCGGACGTACAAGAACGCCGTCGTTGCGATTTTTTTGGAAG
TCGGCGGCGTGACAAATGCCGCCGTATCTTTTCCCCGCGCCTCGCCACCT
CTCCTGATGGAGGAGCTTACGGCGGAGGACCCCGCGATGGCTTCCTCCCT
CCCCCCGGGCGCAAACCCCATTTCCGCATCCATCAGGCGCTCCACATCTC
TGAGTTTTGCCAGGTGCGCGGCCGGGTCGCCGTTACGG
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