mRNA_F-serratus_M_contig86.19978.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig86.19978.1
Unique NamemRNA_F-serratus_M_contig86.19978.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.460e-17
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAGV 120
            LPLLK RAAKPRVLLAA+SRYNNKQDG FLGYLP+KNAGV
Sbjct:    2 LPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.460e-15
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAGV 120
            LPLLK+RAAKPRVLLAA+SRYN KQDG FLGYLPDKNAGV
Sbjct:  782 LPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.690e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    4 PLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAGV 120
            PLLK+RAAKPRVLLAALSRYN KQDGAFLGYLP+K+ GV
Sbjct:  447 PLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.830e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 PLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAGV 120
            PLLK+RAA  RVLLAA+SRYNNKQDGAFLGYLP+KN  V
Sbjct:  814 PLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.340e-11
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKN 111
            LP LK+RA KP VLLAALSRYNNKQDG FLGY PDKN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.130e-10
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAG 117
            LP LK+RA KPRV LA LSRYNNKQDG FLGY P KN G
Sbjct:  365 LPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.710e-10
Identity = 34/51 (66.67%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGY-----------LPDKNAGV 120
            LPLLK+RAAKPRVLLAA+SRYNNK DGAFLG            LP KNAG 
Sbjct:  392 LPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
[Close]
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Match: D8LPN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 45.1 bits (105), Expect = 3.060e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAG 117
            LP+LK+R  KPR LLAALSRY +KQD +F G+ P  + G
Sbjct:    2 LPVLKRRVTKPRALLAALSRYIDKQDRSFTGF-PGNHVG 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig86.19978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJ25_ECTSI6.460e-1790.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1W5_9PHAE7.460e-1590.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE1.690e-1387.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE1.830e-1182.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI8.340e-1183.78EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JNS0_9PHAE4.130e-1076.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE5.710e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPN9_ECTSI3.060e-558.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig86contigF-serratus_M_contig86:304058..304274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog2880.D7G2C8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932526.865903-CDS-F-serratus_M_contig86:304057..3041161622932526.865903-CDS-F-serratus_M_contig86:304057..304116Fucus serratus maleCDSF-serratus_M_contig86 304058..304116 +
1690964350.3017666-CDS-F-serratus_M_contig86:304057..3041161690964350.3017666-CDS-F-serratus_M_contig86:304057..304116Fucus serratus maleCDSF-serratus_M_contig86 304058..304116 +
1622932526.9019623-CDS-F-serratus_M_contig86:304210..3042741622932526.9019623-CDS-F-serratus_M_contig86:304210..304274Fucus serratus maleCDSF-serratus_M_contig86 304211..304274 +
1690964350.314669-CDS-F-serratus_M_contig86:304210..3042741690964350.314669-CDS-F-serratus_M_contig86:304210..304274Fucus serratus maleCDSF-serratus_M_contig86 304211..304274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig86.19978.1prot_F-serratus_M_contig86.19978.1Fucus serratus malepolypeptideF-serratus_M_contig86 304058..304274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig86.19978.1

>prot_F-serratus_M_contig86.19978.1 ID=prot_F-serratus_M_contig86.19978.1|Name=mRNA_F-serratus_M_contig86.19978.1|organism=Fucus serratus male|type=polypeptide|length=41bp
LPLLKKRAAKPRVLLAALSRYNNKQDGAFLGYLPDKNAGV*
back to top

mRNA from alignment at F-serratus_M_contig86:304058..304274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig86.19978.1 ID=mRNA_F-serratus_M_contig86.19978.1|Name=mRNA_F-serratus_M_contig86.19978.1|organism=Fucus serratus male|type=mRNA|length=217bp|location=Sequence derived from alignment at F-serratus_M_contig86:304058..304274+ (Fucus serratus male)
CTACCGCTTCTGAAGAAGAGGGCGGCGAAGCCTCGGGTGCTCTTGGCGGC
CCTGTCCAGGTGCGTGGTGTTGTTGAGCTATTCGGGCGTTTATCGCGGCC
AATACACGGTAAACAAACAAACCACCCGTTCACCCCCCGTTTGTTTTCGA
CAGGTACAACAACAAGCAGGACGGAGCTTTCCTCGGGTACCTCCCGGATA
AAAACGCGGGAGTCTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig86:304058..304274+

>mRNA_F-serratus_M_contig86.19978.1 ID=mRNA_F-serratus_M_contig86.19978.1|Name=mRNA_F-serratus_M_contig86.19978.1|organism=Fucus serratus male|type=CDS|length=246bp|location=Sequence derived from alignment at F-serratus_M_contig86:304058..304274+ (Fucus serratus male)
CTACCGCTTCTGAAGAAGAGGGCGGCGAAGCCTCGGGTGCTCTTGGCGGC
CCTGTCCAGCTACCGCTTCTGAAGAAGAGGGCGGCGAAGCCTCGGGTGCT
CTTGGCGGCCCTGTCCAGGTACAACAACAAGCAGGACGGAGCTTTCCTCG
GGTACCTCCCGGATAAAAACGCGGGAGTCTAAGTACAACAACAAGCAGGA
CGGAGCTTTCCTCGGGTACCTCCCGGATAAAAACGCGGGAGTCTAA
back to top