mRNA_F-serratus_M_contig858.19966.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig858.19966.1
Unique NamemRNA_F-serratus_M_contig858.19966.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig858.19966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig858contigF-serratus_M_contig858:208863..210245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932522.159443-CDS-F-serratus_M_contig858:208862..2090571622932522.159443-CDS-F-serratus_M_contig858:208862..209057Fucus serratus maleCDSF-serratus_M_contig858 208863..209057 -
1690964348.8033066-CDS-F-serratus_M_contig858:208862..2090571690964348.8033066-CDS-F-serratus_M_contig858:208862..209057Fucus serratus maleCDSF-serratus_M_contig858 208863..209057 -
1622932522.1772728-CDS-F-serratus_M_contig858:210164..2102451622932522.1772728-CDS-F-serratus_M_contig858:210164..210245Fucus serratus maleCDSF-serratus_M_contig858 210165..210245 -
1690964348.8138292-CDS-F-serratus_M_contig858:210164..2102451690964348.8138292-CDS-F-serratus_M_contig858:210164..210245Fucus serratus maleCDSF-serratus_M_contig858 210165..210245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig858.19966.1prot_F-serratus_M_contig858.19966.1Fucus serratus malepolypeptideF-serratus_M_contig858 208863..210245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig858.19966.1

>prot_F-serratus_M_contig858.19966.1 ID=prot_F-serratus_M_contig858.19966.1|Name=mRNA_F-serratus_M_contig858.19966.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MDSIKAEKDYTRLQNVTANDLDQAFKKGGIKSKTSVQLCAWKKACLGFSA
DGFQTLRELSESNGSDGVDPKCLSLNAVNTQQVAMLKDTPLT
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mRNA from alignment at F-serratus_M_contig858:208863..210245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig858.19966.1 ID=mRNA_F-serratus_M_contig858.19966.1|Name=mRNA_F-serratus_M_contig858.19966.1|organism=Fucus serratus male|type=mRNA|length=1383bp|location=Sequence derived from alignment at F-serratus_M_contig858:208863..210245- (Fucus serratus male)
ATGGACTCGATCAAGGCCGAGAAGGACTACACTCGACTGCAGAACGTTAC
GGCGAACGATCTAGACCAGGCGTTCAAGAAGGTGTGTTGAGGTTCGCCTC
CTGTCCTGTTATTCTGGGTTACGAAAGAGGCAGACAAAATTATGTCGTGC
TCCTGTACAAGACATATTTCTGCCCTACTATGGTTGTTTAAGAAATAATA
TTGCTCTTCGTTCTCCTGTTGTTCTGGATTATCAAGATAATCTACATCAT
GGTCCTCTGTTGGCGTTTCAATACTGTATTGGATTTGTCTTTGTTGTATA
TTTATATACTCTTTTGTCTTGACTGTTTTTTCTTGTGTCCCTGCATGGCG
ATTAATGTAATTGTACAGTATAACGGTGGGCTTCTCCCCGACATTATACT
GTTGACCCAATGTTGCCATCATAGGGGAACCCGTTTAAATGCCATGAAGA
GGTTTTGTATTTTTTCAGCCTTTGAGCCAACCTGAACGTTCTGAAATGTT
TTGAAGGTGTGTTGGGGTTCGCCTCCTGTTATTCTGGGTTACGAAAGAGG
CAGACAAAATTATGTCGTGCTCCTGTACAAGACATATCTCTGCCCTGCTA
TGGTTGTTTAAGAAATAATATTGCTCTTCGTGCTCCTGTTGTTCTGGATT
ATCAAGATAATCTACATCATGGTCCTCTGTTGGCGTTTCAATACTGTATT
GGATTTGTCTTTGTTGTATATTTATATACTCTTTTGTCTTGACTGTTTTA
TCTTGTGTGCCTGCATGGCAATTAATGTAATTGTACAGTATAACGGTGGG
CTTCTCCCCGACATTATACTGTTGACCCAATGTTGCCATCATAGGGGAAC
CCGTTTAAATGCCATGAAGAGGTTTTGTATTTTTTCAGCCTTTGAGCCGA
CCTGAACGTTCTGACATTTTTTGTCCCTGACTGGGGGATGCTCAGAACGA
CGTTCTGTATTTTTCTTTAAATACAACGCCGAGACGTGTGCCCGACAGCT
TCGTTTGGACCCACCACCCCGCTAAGAGGGGGAGGTCATGAACCTTCCCC
CCTCCTCCCACTGGGGGGTGATAATGAAGGCGCGACGCCCGTGCCCACCC
CGTGTATATTCCGGGCCCTAACTCGTTATGTGCTTACGCTCTTCCAAACT
GCTTTATGTATTTGTTTGCCCCGTACATCCGTTTCCAGGGAGGCATCAAG
AGTAAAACCAGTGTACAGCTGTGCGCATGGAAGAAAGCCTGCCTCGGTTT
CTCGGCCGACGGGTTCCAGACGCTCAGAGAGCTCTCCGAAAGCAACGGCA
GCGATGGCGTGGACCCCAAATGCCTTTCCCTCAACGCGGTCAACACTCAG
CAGGTGGCGATGCTGAAGGACACCCCTCTGACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig858:208863..210245-

>mRNA_F-serratus_M_contig858.19966.1 ID=mRNA_F-serratus_M_contig858.19966.1|Name=mRNA_F-serratus_M_contig858.19966.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig858:208863..210245- (Fucus serratus male)
ATGGACTCGATCAAGGCCGAGAAGGACTACACTCGACTGCAGAACGTTAC
GGCGAACGATCTAGACCAGGCGTTCAAGAAGATGGACTCGATCAAGGCCG
AGAAGGACTACACTCGACTGCAGAACGTTACGGCGAACGATCTAGACCAG
GCGTTCAAGAAGGGAGGCATCAAGAGTAAAACCAGTGTACAGCTGTGCGC
ATGGAAGAAAGCCTGCCTCGGTTTCTCGGCCGACGGGTTCCAGACGCTCA
GAGAGCTCTCCGAAAGCAACGGCAGCGATGGCGTGGACCCCAAATGCCTT
TCCCTCAACGCGGTCAACACTCAGCAGGTGGCGATGCTGAAGGACACCCC
TCTGACCGGAGGCATCAAGAGTAAAACCAGTGTACAGCTGTGCGCATGGA
AGAAAGCCTGCCTCGGTTTCTCGGCCGACGGGTTCCAGACGCTCAGAGAG
CTCTCCGAAAGCAACGGCAGCGATGGCGTGGACCCCAAATGCCTTTCCCT
CAACGCGGTCAACACTCAGCAGGTGGCGATGCTGAAGGACACCCCTCTGA
CC
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