mRNA_F-serratus_M_contig847.19849.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig847.19849.1
Unique NamemRNA_F-serratus_M_contig847.19849.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig847.19849.1 vs. uniprot
Match: D7FID0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.070e-13
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:  207 SCWKRVEDLEDEEASLDQQLMKLEKIRRGERMEVLTIEQECKLVEIRIIKADGETAQLDEQFRALESTVQD 419
            SCW+RV +LEDEEASL+ +LM+LEKIRRGER+E+L +EQ C+  E+ +++A  E A LD + + LE+  +D
Sbjct:  357 SCWRRVGELEDEEASLNHRLMRLEKIRRGERLEILGLEQVCQAAEVAMLQAQDEGAHLDAKSQILENLAED 427
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig847.19849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FID0_ECTSI5.070e-1353.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig847contigF-serratus_M_contig847:217450..218687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig847.19849.1prot_F-serratus_M_contig847.19849.1Fucus serratus malepolypeptideF-serratus_M_contig847 217787..218687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932494.1191623-UTR-F-serratus_M_contig847:217449..2174981622932494.1191623-UTR-F-serratus_M_contig847:217449..217498Fucus serratus maleUTRF-serratus_M_contig847 217450..217498 +
1690964335.7363162-UTR-F-serratus_M_contig847:217449..2174981690964335.7363162-UTR-F-serratus_M_contig847:217449..217498Fucus serratus maleUTRF-serratus_M_contig847 217450..217498 +
1622932494.131306-UTR-F-serratus_M_contig847:217782..2177861622932494.131306-UTR-F-serratus_M_contig847:217782..217786Fucus serratus maleUTRF-serratus_M_contig847 217783..217786 +
1690964335.753804-UTR-F-serratus_M_contig847:217782..2177861690964335.753804-UTR-F-serratus_M_contig847:217782..217786Fucus serratus maleUTRF-serratus_M_contig847 217783..217786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932494.1451855-CDS-F-serratus_M_contig847:217786..2179381622932494.1451855-CDS-F-serratus_M_contig847:217786..217938Fucus serratus maleCDSF-serratus_M_contig847 217787..217938 +
1690964335.7664843-CDS-F-serratus_M_contig847:217786..2179381690964335.7664843-CDS-F-serratus_M_contig847:217786..217938Fucus serratus maleCDSF-serratus_M_contig847 217787..217938 +
1622932494.1571808-CDS-F-serratus_M_contig847:218224..2183241622932494.1571808-CDS-F-serratus_M_contig847:218224..218324Fucus serratus maleCDSF-serratus_M_contig847 218225..218324 +
1690964335.7768266-CDS-F-serratus_M_contig847:218224..2183241690964335.7768266-CDS-F-serratus_M_contig847:218224..218324Fucus serratus maleCDSF-serratus_M_contig847 218225..218324 +
1622932494.2206903-CDS-F-serratus_M_contig847:218561..2186871622932494.2206903-CDS-F-serratus_M_contig847:218561..218687Fucus serratus maleCDSF-serratus_M_contig847 218562..218687 +
1690964335.7869527-CDS-F-serratus_M_contig847:218561..2186871690964335.7869527-CDS-F-serratus_M_contig847:218561..218687Fucus serratus maleCDSF-serratus_M_contig847 218562..218687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig847.19849.1

>prot_F-serratus_M_contig847.19849.1 ID=prot_F-serratus_M_contig847.19849.1|Name=mRNA_F-serratus_M_contig847.19849.1|organism=Fucus serratus male|type=polypeptide|length=126bp
MDLSHTDEFRCPGFAPSRHDEGPQDTRFNPGDRLQPSTLSERIELLDQET
RSCWKRVEDLEDEEASLDQQLMKLEKIRRGERMEVLTIEQECKLVEIRII
KADGETAQLDEQFRALESTVQDATDG
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mRNA from alignment at F-serratus_M_contig847:217450..218687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig847.19849.1 ID=mRNA_F-serratus_M_contig847.19849.1|Name=mRNA_F-serratus_M_contig847.19849.1|organism=Fucus serratus male|type=mRNA|length=1238bp|location=Sequence derived from alignment at F-serratus_M_contig847:217450..218687+ (Fucus serratus male)
CTCGCGTTGTTTAATGGTCTAGGGCTTGGAAGGGCGAAACCTCCGAGTGG
TGAGGATATCTGTGGAACAAAAGTCGAAGCCCGAACAAAGTGTAGTTCCT
CATTGCCGCTTTGTTTGGCGGAATGATGTAGGGTGTGTCTTGAACGCTAA
TGTTTGTACTATCGAAGAGTTCTGCTTTAATACAACGAACAGTAAGATTC
TGGAAGGCCCCGAGTCACGAATGAACATATCTCCTCTAAACTGCTGATTT
CCGGGACACACGAATGGCATGTAACATCAGAAACTCGTCATCATCCGGAT
AGAGGGTGAATGCGACGGCCGGTTCTCGTACAGGTTTATGGATCTCTCTC
ATACGGATGAGTTTCGATGTCCAGGCTTTGCACCGTCTAGACACGATGAA
GGTCCTCAAGATACTCGTTTCAACCCCGGAGACAGGTTGCAGCCTTCCAC
GCTAAGCGAGCGTATTGAACTCCTTGACCAGGAGACAAGGCACGTACGTA
TTTTGTGGCAATTTGGATGCTTAACTTCCCAGAAAGACACGTGTTGCATA
TTTCCTACCCACATCATACTCATCATTATTTATGGTGTTTTTCCTCTCGG
TATGTCTTGGTACGATGTCAGAGCCGTCCGTCTCCCCACACACATTAAAG
TATAAGCATGTACACAACAATATTTAGCATTCTCGCAATTCTTACATCAC
TTTTACTTATTATTTGGGTGTGCATGTGTGTTGCCATCCTATTTGGGTGT
GATATCTTATGAATGGAATGCGCAGATCGTGCTGGAAACGGGTAGAAGAC
CTGGAGGATGAAGAGGCGTCATTGGACCAACAGCTCATGAAGCTCGAGAA
GATTCGCCGTGGGGAACGAATGGAGGTCAACCTTTGACCAGCGAATAAAC
TATTATTGATAGGCGTGCTGCCCCCGTACGATAACAATATCACTTGATAT
CTTTACGACATAACCCTGGTGAGTATAGAGCTAACTTGAACGTTTCACAA
GCATATTTATCAACCTTCGCCTCCACTTTCCTGTACTACTCCAGATCCCT
CGCCCTAGCTGGCACATACTGTTATTACTATATTTACGCTTTGCAACACA
AACAACCATCAGGTGCTTACGATTGAGCAGGAGTGCAAATTGGTAGAAAT
CAGAATCATCAAGGCTGATGGGGAGACTGCTCAACTGGACGAGCAGTTTC
GGGCACTGGAGTCAACTGTTCAGGACGCTACAGACGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig847:217450..218687+

>mRNA_F-serratus_M_contig847.19849.1 ID=mRNA_F-serratus_M_contig847.19849.1|Name=mRNA_F-serratus_M_contig847.19849.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig847:217450..218687+ (Fucus serratus male)
ATGGATCTCTCTCATACGGATGAGTTTCGATGTCCAGGCTTTGCACCGTC
TAGACACGATGAAGGTCCTCAAGATACTCGTTTCAACCCCGGAGACAGGT
TGCAGCCTTCCACGCTAAGCGAGCGTATTGAACTCCTTGACCAGGAGACA
AGATGGATCTCTCTCATACGGATGAGTTTCGATGTCCAGGCTTTGCACCG
TCTAGACACGATGAAGGTCCTCAAGATACTCGTTTCAACCCCGGAGACAG
GTTGCAGCCTTCCACGCTAAGCGAGCGTATTGAACTCCTTGACCAGGAGA
CAAGATCGTGCTGGAAACGGGTAGAAGACCTGGAGGATGAAGAGGCGTCA
TTGGACCAACAGCTCATGAAGCTCGAGAAGATTCGCCGTGGGGAACGAAT
GGAGATCGTGCTGGAAACGGGTAGAAGACCTGGAGGATGAAGAGGCGTCA
TTGGACCAACAGCTCATGAAGCTCGAGAAGATTCGCCGTGGGGAACGAAT
GGAGGTGCTTACGATTGAGCAGGAGTGCAAATTGGTAGAAATCAGAATCA
TCAAGGCTGATGGGGAGACTGCTCAACTGGACGAGCAGTTTCGGGCACTG
GAGTCAACTGTTCAGGACGCTACAGACGGTGTGCTTACGATTGAGCAGGA
GTGCAAATTGGTAGAAATCAGAATCATCAAGGCTGATGGGGAGACTGCTC
AACTGGACGAGCAGTTTCGGGCACTGGAGTCAACTGTTCAGGACGCTACA
GACGGT
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