mRNA_F-serratus_M_contig837.19749.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig837.19749.1
Unique NamemRNA_F-serratus_M_contig837.19749.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig837.19749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig837contigF-serratus_M_contig837:118084..119766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D8LI60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size929
Cds size921
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig837.19749.1prot_F-serratus_M_contig837.19749.1Fucus serratus malepolypeptideF-serratus_M_contig837 118092..119766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932472.8423896-UTR-F-serratus_M_contig837:118083..1180911622932472.8423896-UTR-F-serratus_M_contig837:118083..118091Fucus serratus maleUTRF-serratus_M_contig837 118084..118091 +
1690964325.5288286-UTR-F-serratus_M_contig837:118083..1180911690964325.5288286-UTR-F-serratus_M_contig837:118083..118091Fucus serratus maleUTRF-serratus_M_contig837 118084..118091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932472.8608322-CDS-F-serratus_M_contig837:118091..1182131622932472.8608322-CDS-F-serratus_M_contig837:118091..118213Fucus serratus maleCDSF-serratus_M_contig837 118092..118213 +
1690964325.5434465-CDS-F-serratus_M_contig837:118091..1182131690964325.5434465-CDS-F-serratus_M_contig837:118091..118213Fucus serratus maleCDSF-serratus_M_contig837 118092..118213 +
1622932472.8743193-CDS-F-serratus_M_contig837:118473..1187461622932472.8743193-CDS-F-serratus_M_contig837:118473..118746Fucus serratus maleCDSF-serratus_M_contig837 118474..118746 +
1690964325.5607173-CDS-F-serratus_M_contig837:118473..1187461690964325.5607173-CDS-F-serratus_M_contig837:118473..118746Fucus serratus maleCDSF-serratus_M_contig837 118474..118746 +
1622932472.8871427-CDS-F-serratus_M_contig837:119240..1197661622932472.8871427-CDS-F-serratus_M_contig837:119240..119766Fucus serratus maleCDSF-serratus_M_contig837 119241..119766 +
1690964325.579838-CDS-F-serratus_M_contig837:119240..1197661690964325.579838-CDS-F-serratus_M_contig837:119240..119766Fucus serratus maleCDSF-serratus_M_contig837 119241..119766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig837.19749.1

>prot_F-serratus_M_contig837.19749.1 ID=prot_F-serratus_M_contig837.19749.1|Name=mRNA_F-serratus_M_contig837.19749.1|organism=Fucus serratus male|type=polypeptide|length=307bp
MVTALDGGGEGMKLRGAVTAERREMARTVTKKGFWDRVAERAKNASLYGS
GDDGESICSVLSFEDLYAKTTQVTDALATVERARESERVKHLPPRWPRAA
ANGGKGGGGRVDGDWREQQRRARAASRSETTSVATDPNDTTLLDRRRSSG
GSVAPTVDGDSVDDTVSNLNSVSHDPLEYITTTESLSSSLDLDGLRTKGE
ISEEADGGIFPPLNRLRRRGSRRRASSSWTSVARAKVEAAALAVSGTADD
SADRCEKRFTPAAPSDGASLATVARAPRSTPSVGSAGGLSETGGRGISAP
RWPVERK
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mRNA from alignment at F-serratus_M_contig837:118084..119766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig837.19749.1 ID=mRNA_F-serratus_M_contig837.19749.1|Name=mRNA_F-serratus_M_contig837.19749.1|organism=Fucus serratus male|type=mRNA|length=1683bp|location=Sequence derived from alignment at F-serratus_M_contig837:118084..119766+ (Fucus serratus male)
ACAGGCGTATGGTGACGGCGTTGGACGGAGGCGGGGAAGGGATGAAGCTT
CGGGGAGCGGTGACGGCGGAACGGCGGGAGATGGCCCGCACGGTGACGAA
GAAGGGGTTCTGGGACAGAGTCGCTGAAAGGCGAGGAAAGACGTTCTGAG
GTCGGGGATCTATACAACACCCCGTCCACCGTCGTTCATCCTTCGCATTG
CAAAGGCTCCTACAAGATTAATACTCCTATTATAATAATAGCAAATACTC
CTGTGAATACCTACCGTTCATGTTGATGGTGATGTTGCGGTGACTTCGTT
CTTGATCACTTTGAAAAGACCTGTAAAGGACCCAACTTCAGTACACATTC
CCCTGTTTCCCTGCTCCCCCGATACCCCCTTGGAACACAGAGCGAAAAAC
GCCTCCTTATATGGTAGTGGTGATGATGGCGAGAGCATCTGCTCCGTGCT
GAGCTTCGAGGACTTGTACGCCAAGACGACGCAGGTCACCGATGCTCTAG
CGACGGTCGAGCGTGCGAGGGAAAGCGAGCGGGTCAAACATTTACCCCCT
CGTTGGCCGAGAGCGGCGGCGAACGGGGGAAAGGGAGGGGGAGGGCGCGT
TGATGGTGACTGGAGGGAGCAGCAGCGACGAGCGCGTGCGGCAAGTAGAA
GCGAGACGACAAGGTTTGTGTATGGGCGCCAGGGGCCTTAACGGGCATGG
GCGACGTCCTGACGGGTATCATATCGTAGCGGCACGTGGTTGTCTCGATT
TGTTTTTTCGGTAATGTGGTCGTGGTCGTGGTCGTGGTCGCTTTCCATCA
CCGCAGGGACTTTCTGCGGGACGTTTTCCCCTATTAATAGGTGATGGTGG
ATGTTGCCCGTGTTGTCCTAGACGGCATTATACCTGTTTTTCAATCGGGA
TATCAAACCGTGTTCGGTGTTTGATCCCATGATACGTCATATTTCCGTAC
GTATTTCCCCGATATAATCGATACAGTATCATGGATATCATCGGTAGGTT
GGTATGAAAGGGCGGCGGGGGGAAGGGAGAGGTAGCTACCGGAGTTTTTT
TCATCTCCCCGCTACCCCCACCCGATGCTTCCTGCACGCGAGTTACCTCC
CCCTCTCCCCTGTTATACCCACCCATTCCTCCTATTAATAAAACCATCCC
CAATCAGCGTTGCGACCGATCCCAACGACACGACGCTCTTGGACCGCCGC
CGCTCATCGGGCGGCAGCGTAGCACCGACGGTGGATGGAGACAGCGTCGA
CGACACCGTGAGCAACCTCAACAGCGTGAGCCACGACCCCCTCGAATATA
TCACTACTACCGAATCTCTGTCGTCTTCGCTTGACCTCGACGGTCTACGG
ACGAAGGGCGAAATATCTGAAGAGGCGGACGGCGGGATCTTCCCCCCTCT
CAACCGCCTTCGACGGCGAGGCTCTCGTCGAAGAGCTTCGTCTTCGTGGA
CCTCTGTAGCGCGGGCGAAAGTCGAAGCCGCCGCCTTAGCTGTTTCCGGC
ACCGCGGATGATTCCGCAGACCGTTGCGAGAAACGCTTTACGCCGGCAGC
GCCCAGCGACGGTGCTTCCCTGGCGACGGTCGCGAGAGCGCCGCGGTCTA
CGCCAAGCGTGGGAAGCGCGGGAGGCCTCTCTGAGACAGGAGGGCGCGGG
ATCTCGGCGCCTCGTTGGCCGGTCGAGAGAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig837:118084..119766+

>mRNA_F-serratus_M_contig837.19749.1 ID=mRNA_F-serratus_M_contig837.19749.1|Name=mRNA_F-serratus_M_contig837.19749.1|organism=Fucus serratus male|type=CDS|length=1842bp|location=Sequence derived from alignment at F-serratus_M_contig837:118084..119766+ (Fucus serratus male)
ATGGTGACGGCGTTGGACGGAGGCGGGGAAGGGATGAAGCTTCGGGGAGC
GGTGACGGCGGAACGGCGGGAGATGGCCCGCACGGTGACGAAGAAGGGGT
TCTGGGACAGAGTCGCTGAAAGATGGTGACGGCGTTGGACGGAGGCGGGG
AAGGGATGAAGCTTCGGGGAGCGGTGACGGCGGAACGGCGGGAGATGGCC
CGCACGGTGACGAAGAAGGGGTTCTGGGACAGAGTCGCTGAAAGAGCGAA
AAACGCCTCCTTATATGGTAGTGGTGATGATGGCGAGAGCATCTGCTCCG
TGCTGAGCTTCGAGGACTTGTACGCCAAGACGACGCAGGTCACCGATGCT
CTAGCGACGGTCGAGCGTGCGAGGGAAAGCGAGCGGGTCAAACATTTACC
CCCTCGTTGGCCGAGAGCGGCGGCGAACGGGGGAAAGGGAGGGGGAGGGC
GCGTTGATGGTGACTGGAGGGAGCAGCAGCGACGAGCGCGTGCGGCAAGT
AGAAGCGAGACGACAAGAGCGAAAAACGCCTCCTTATATGGTAGTGGTGA
TGATGGCGAGAGCATCTGCTCCGTGCTGAGCTTCGAGGACTTGTACGCCA
AGACGACGCAGGTCACCGATGCTCTAGCGACGGTCGAGCGTGCGAGGGAA
AGCGAGCGGGTCAAACATTTACCCCCTCGTTGGCCGAGAGCGGCGGCGAA
CGGGGGAAAGGGAGGGGGAGGGCGCGTTGATGGTGACTGGAGGGAGCAGC
AGCGACGAGCGCGTGCGGCAAGTAGAAGCGAGACGACAAGCGTTGCGACC
GATCCCAACGACACGACGCTCTTGGACCGCCGCCGCTCATCGGGCGGCAG
CGTAGCACCGACGGTGGATGGAGACAGCGTCGACGACACCGTGAGCAACC
TCAACAGCGTGAGCCACGACCCCCTCGAATATATCACTACTACCGAATCT
CTGTCGTCTTCGCTTGACCTCGACGGTCTACGGACGAAGGGCGAAATATC
TGAAGAGGCGGACGGCGGGATCTTCCCCCCTCTCAACCGCCTTCGACGGC
GAGGCTCTCGTCGAAGAGCTTCGTCTTCGTGGACCTCTGTAGCGCGGGCG
AAAGTCGAAGCCGCCGCCTTAGCTGTTTCCGGCACCGCGGATGATTCCGC
AGACCGTTGCGAGAAACGCTTTACGCCGGCAGCGCCCAGCGACGGTGCTT
CCCTGGCGACGGTCGCGAGAGCGCCGCGGTCTACGCCAAGCGTGGGAAGC
GCGGGAGGCCTCTCTGAGACAGGAGGGCGCGGGATCTCGGCGCCTCGTTG
GCCGGTCGAGAGAAAACGTTGCGACCGATCCCAACGACACGACGCTCTTG
GACCGCCGCCGCTCATCGGGCGGCAGCGTAGCACCGACGGTGGATGGAGA
CAGCGTCGACGACACCGTGAGCAACCTCAACAGCGTGAGCCACGACCCCC
TCGAATATATCACTACTACCGAATCTCTGTCGTCTTCGCTTGACCTCGAC
GGTCTACGGACGAAGGGCGAAATATCTGAAGAGGCGGACGGCGGGATCTT
CCCCCCTCTCAACCGCCTTCGACGGCGAGGCTCTCGTCGAAGAGCTTCGT
CTTCGTGGACCTCTGTAGCGCGGGCGAAAGTCGAAGCCGCCGCCTTAGCT
GTTTCCGGCACCGCGGATGATTCCGCAGACCGTTGCGAGAAACGCTTTAC
GCCGGCAGCGCCCAGCGACGGTGCTTCCCTGGCGACGGTCGCGAGAGCGC
CGCGGTCTACGCCAAGCGTGGGAAGCGCGGGAGGCCTCTCTGAGACAGGA
GGGCGCGGGATCTCGGCGCCTCGTTGGCCGGTCGAGAGAAAA
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