mRNA_F-serratus_M_contig8310.19715.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8310.19715.1
Unique NamemRNA_F-serratus_M_contig8310.19715.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8310.19715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8310contigF-serratus_M_contig8310:3592..4005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932467.5692945-CDS-F-serratus_M_contig8310:3591..38331622932467.5692945-CDS-F-serratus_M_contig8310:3591..3833Fucus serratus maleCDSF-serratus_M_contig8310 3592..3833 +
1690964323.1022189-CDS-F-serratus_M_contig8310:3591..38331690964323.1022189-CDS-F-serratus_M_contig8310:3591..3833Fucus serratus maleCDSF-serratus_M_contig8310 3592..3833 +
1622932467.5866656-CDS-F-serratus_M_contig8310:3875..40051622932467.5866656-CDS-F-serratus_M_contig8310:3875..4005Fucus serratus maleCDSF-serratus_M_contig8310 3876..4005 +
1690964323.1136763-CDS-F-serratus_M_contig8310:3875..40051690964323.1136763-CDS-F-serratus_M_contig8310:3875..4005Fucus serratus maleCDSF-serratus_M_contig8310 3876..4005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8310.19715.1prot_F-serratus_M_contig8310.19715.1Fucus serratus malepolypeptideF-serratus_M_contig8310 3592..4005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8310.19715.1

>prot_F-serratus_M_contig8310.19715.1 ID=prot_F-serratus_M_contig8310.19715.1|Name=mRNA_F-serratus_M_contig8310.19715.1|organism=Fucus serratus male|type=polypeptide|length=124bp
IGEIVELLAALDEVGIPVHEEVIWLHFMDNLLTDYEFIKNNLQRSKEPLT
HIVLEDALRSRYNVQSEGKKERTIPDSVLLVHGGNNKGKLESRVRSKGLS
SQAKITCNHCQKPGHIRFNCPERQ
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mRNA from alignment at F-serratus_M_contig8310:3592..4005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8310.19715.1 ID=mRNA_F-serratus_M_contig8310.19715.1|Name=mRNA_F-serratus_M_contig8310.19715.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig8310:3592..4005+ (Fucus serratus male)
ATCGGCGAGATCGTGGAACTGCTTGCCGCATTAGACGAGGTGGGAATACC
CGTGCACGAAGAGGTTATCTGGCTGCACTTTATGGACAACCTTCTCACCG
ATTACGAGTTTATCAAGAACAACCTGCAACGTTCGAAGGAGCCACTTACA
CATATTGTGCTGGAAGACGCACTGCGGAGCAGGTACAACGTACAATCTGA
AGGAAAGAAGGAGAGGACGATTCCGGATTCTGTATTGCTCGTGTCCGGCT
CGAGGGCTGGGCGATGAGTTGGCCGCGGTGGAAGCCATGGAGGAAACAAC
AAAGGCAAGCTCGAGAGCAGGGTTCGAAGTAAGGGGCTTTCATCGCAGGC
GAAAATAACCTGCAATCACTGCCAAAAGCCCGGGCACATTCGATTCAACT
GTCCCGAGCGACAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8310:3592..4005+

>mRNA_F-serratus_M_contig8310.19715.1 ID=mRNA_F-serratus_M_contig8310.19715.1|Name=mRNA_F-serratus_M_contig8310.19715.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig8310:3592..4005+ (Fucus serratus male)
ATCGGCGAGATCGTGGAACTGCTTGCCGCATTAGACGAGGTGGGAATACC
CGTGCACGAAGAGGTTATCTGGCTGCACTTTATGGACAACCTTCTCACCG
ATTACGAGTTTATCAAGAACAACCTGCAACGTTCGAAGGAGCCACTTACA
CATATTGTGCTGGAAGACGCACTGCGGAGCAGGTACAACGTACAATCTGA
AGGAAAGAAGGAGAGGACGATTCCGGATTCTGTATTGCTCGTATCGGCGA
GATCGTGGAACTGCTTGCCGCATTAGACGAGGTGGGAATACCCGTGCACG
AAGAGGTTATCTGGCTGCACTTTATGGACAACCTTCTCACCGATTACGAG
TTTATCAAGAACAACCTGCAACGTTCGAAGGAGCCACTTACACATATTGT
GCTGGAAGACGCACTGCGGAGCAGGTACAACGTACAATCTGAAGGAAAGA
AGGAGAGGACGATTCCGGATTCTGTATTGCTCGTCCATGGAGGAAACAAC
AAAGGCAAGCTCGAGAGCAGGGTTCGAAGTAAGGGGCTTTCATCGCAGGC
GAAAATAACCTGCAATCACTGCCAAAAGCCCGGGCACATTCGATTCAACT
GTCCCGAGCGACAACCATGGAGGAAACAACAAAGGCAAGCTCGAGAGCAG
GGTTCGAAGTAAGGGGCTTTCATCGCAGGCGAAAATAACCTGCAATCACT
GCCAAAAGCCCGGGCACATTCGATTCAACTGTCCCGAGCGACAA
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