mRNA_F-serratus_M_contig824.19642.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig824.19642.1
Unique NamemRNA_F-serratus_M_contig824.19642.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.080e-20
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   19 RALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYA 240
            R  +G LMW A  TRPDIA AL    R++H P+ R WKAL+Q+ SY+NAT ++G+ +VRGSGL L VY DA YA
Sbjct: 1027 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYA 1100
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.120e-20
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:   19 RALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYA 240
            R  +G LMW A  TRPDIA AL    R++H P+ R WKAL+Q+ SY+NAT ++G+ +VRGSGL L VY DA YA
Sbjct: 1580 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYA 1653
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.870e-19
Identity = 33/74 (44.59%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   19 RALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSGLRLSVYADADYA 240
            R ++GS+MW++  +RPD++ A+R  +RH+H PS RHW A+ ++  Y+  T+++G+ + +GSGLRL+VY +A YA
Sbjct:   36 REVIGSMMWVSTFSRPDVSFAVRAVARHAHAPSKRHWDAIQKILGYLQGTRDLGITYQQGSGLRLAVYVNASYA 109
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.470e-18
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGS--GLRLSVYADADYAA 243
            +R L+GSLMWLA  TRPDIANA+R  +R+  +P   HW+A L +  YV  T ++G+ F RGS  GL + V+ADADYA+
Sbjct:   33 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYAS 110
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5KY90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY90_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.080e-17
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGS--GLRLSVYADADYAA 243
            +R L+GSLMWLA  TRPDIANA+R  +R+  +P   HW+A L +  YV  T ++G+ F RGS  GL + V+ADADYA+
Sbjct:  530 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGISFRRGSVAGLSMEVFADADYAS 607
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.520e-17
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGS--GLRLSVYADADYAA 243
            +R L+GSLMWLA  TRPDIANA+R  +R+  +P   HW+A L +  YV  T + G+ F RGS  GL + V+ADADYA+
Sbjct:  116 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYAS 193
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.970e-17
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRG--SGLRLSVYADADYAA 243
            +R LVGSLMWLA  TRPDIANA+R  +R+  +P   HWKA L +  YV  T  +G+ F RG  +G+ + V+ DADYA+
Sbjct:  100 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYAS 177
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.870e-17
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGS--GLRLSVYADADYAA 243
            +R L+GSLMWLA  TRP+IANA R  +R+  +P   HW+A L +  YV  T ++G+ F RGS  GL + V+ADADYA+
Sbjct:   72 FRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYAS 149
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.060e-17
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGS--GLRLSVYADADYAA 243
            +R L+GSLMWLA  TRPDIANA+R  +R+  +P   HW+A L +  YV  T ++G+ F RGS  GL + V+ DADYA+
Sbjct:  217 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYAS 294
[Close]
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.140e-17
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   16 YRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRG--SGLRLSVYADADYAA 243
            +R LVGSLMWLA  TRPDIANA+R  +R+  +P   HWKA L +  YV  T  +G+ F RG  +G+ + V+ DADYA+
Sbjct:  155 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYAS 232
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig824.19642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE4.080e-2056.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.120e-2056.76Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX2_9PHAE4.870e-1944.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE2.470e-1852.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY90_9PHAE1.080e-1752.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KR24_9PHAE1.520e-1752.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.970e-1751.28Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE2.870e-1751.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE3.060e-1751.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE3.140e-1751.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig824contigF-serratus_M_contig824:281982..282260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue5.6e-11
Seed eggNOG ortholog164328.Phyra87571
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain of unknown function (DUF4219)
EggNOG OGs3QI1B@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932447.7435417-CDS-F-serratus_M_contig824:281981..2822601622932447.7435417-CDS-F-serratus_M_contig824:281981..282260Fucus serratus maleCDSF-serratus_M_contig824 281982..282260 -
1690964313.4273756-CDS-F-serratus_M_contig824:281981..2822601690964313.4273756-CDS-F-serratus_M_contig824:281981..282260Fucus serratus maleCDSF-serratus_M_contig824 281982..282260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig824.19642.1prot_F-serratus_M_contig824.19642.1Fucus serratus malepolypeptideF-serratus_M_contig824 281982..282260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig824.19642.1

>prot_F-serratus_M_contig824.19642.1 ID=prot_F-serratus_M_contig824.19642.1|Name=mRNA_F-serratus_M_contig824.19642.1|organism=Fucus serratus male|type=polypeptide|length=93bp
EEFPKYRALVGSLMWLAVMTRPDIANALRPCSRHSHNPSPRHWKALLQVA
SYVNATKEIGLRFVRGSGLRLSVYADADYAAMVRGLCHDSSFI
back to top

mRNA from alignment at F-serratus_M_contig824:281982..282260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig824.19642.1 ID=mRNA_F-serratus_M_contig824.19642.1|Name=mRNA_F-serratus_M_contig824.19642.1|organism=Fucus serratus male|type=mRNA|length=279bp|location=Sequence derived from alignment at F-serratus_M_contig824:281982..282260- (Fucus serratus male)
GAAGAGTTTCCTAAGTATCGTGCTTTGGTTGGTAGTCTCATGTGGTTGGC
AGTCATGACTAGGCCTGATATCGCGAACGCTCTTCGCCCTTGCTCACGTC
ATAGCCATAATCCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAGCT
TCGTATGTGAATGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGTTC
TGGTTTGAGGTTATCTGTGTACGCAGATGCTGATTACGCGGCGATGGTCC
GAGGGTTGTGCCATGACTCGAGTTTCATC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig824:281982..282260-

>mRNA_F-serratus_M_contig824.19642.1 ID=mRNA_F-serratus_M_contig824.19642.1|Name=mRNA_F-serratus_M_contig824.19642.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig824:281982..282260- (Fucus serratus male)
GAAGAGTTTCCTAAGTATCGTGCTTTGGTTGGTAGTCTCATGTGGTTGGC
AGTCATGACTAGGCCTGATATCGCGAACGCTCTTCGCCCTTGCTCACGTC
ATAGCCATAATCCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAGCT
TCGTATGTGAATGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGTTC
TGGTTTGAGGTTATCTGTGTACGCAGATGCTGATTACGCGGCGATGGTCC
GAGGGTTGTGCCATGACTCGAGTTTCATCGAAGAGTTTCCTAAGTATCGT
GCTTTGGTTGGTAGTCTCATGTGGTTGGCAGTCATGACTAGGCCTGATAT
CGCGAACGCTCTTCGCCCTTGCTCACGTCATAGCCATAATCCTAGTCCGC
GCCACTGGAAGGCGCTTTTGCAGGTAGCTTCGTATGTGAATGCGACGAAA
GAGATTGGTTTGAGGTTCGTTCGGGGTTCTGGTTTGAGGTTATCTGTGTA
CGCAGATGCTGATTACGCGGCGATGGTCCGAGGGTTGTGCCATGACTCGA
GTTTCATC
back to top