mRNA_F-serratus_M_contig818.19581.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19581.1
Unique NamemRNA_F-serratus_M_contig818.19581.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig818.19581.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.480e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   97 GVSLDGARVKIVEVIGTGQSGFDRFCIKL-----QATENSGRDGE-ASMERREWVTWRRLIEFVALR 279
            GVSL G  V++V V+G G+SGFDRFC+++     Q+   +G  G  A   RREWV WRRL EFVALR
Sbjct:  494 GVSLLGGEVEVVRVVGRGKSGFDRFCVRVVEVASQSQRQAGVVGATAPTSRREWVAWRRLTEFVALR 560
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI57_ECTSI3.480e-1153.73CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:35327..35912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4e-09
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932435.5156357-CDS-F-serratus_M_contig818:35326..355241622932435.5156357-CDS-F-serratus_M_contig818:35326..35524Fucus serratus maleCDSF-serratus_M_contig818 35327..35524 +
1690964307.7762187-CDS-F-serratus_M_contig818:35326..355241690964307.7762187-CDS-F-serratus_M_contig818:35326..35524Fucus serratus maleCDSF-serratus_M_contig818 35327..35524 +
1622932435.5372043-CDS-F-serratus_M_contig818:35831..359121622932435.5372043-CDS-F-serratus_M_contig818:35831..35912Fucus serratus maleCDSF-serratus_M_contig818 35832..35912 +
1690964307.7889028-CDS-F-serratus_M_contig818:35831..359121690964307.7889028-CDS-F-serratus_M_contig818:35831..35912Fucus serratus maleCDSF-serratus_M_contig818 35832..35912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19581.1prot_F-serratus_M_contig818.19581.1Fucus serratus malepolypeptideF-serratus_M_contig818 35327..35912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19581.1

>prot_F-serratus_M_contig818.19581.1 ID=prot_F-serratus_M_contig818.19581.1|Name=mRNA_F-serratus_M_contig818.19581.1|organism=Fucus serratus male|type=polypeptide|length=93bp
GEVVNDAAVAGFKDEGRGDITAGSQVGGRDDVGVSLDGARVKIVEVIGTG
QSGFDRFCIKLQATENSGRDGEASMERREWVTWRRLIEFVALR
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mRNA from alignment at F-serratus_M_contig818:35327..35912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19581.1 ID=mRNA_F-serratus_M_contig818.19581.1|Name=mRNA_F-serratus_M_contig818.19581.1|organism=Fucus serratus male|type=mRNA|length=586bp|location=Sequence derived from alignment at F-serratus_M_contig818:35327..35912+ (Fucus serratus male)
GGTGAAGTCGTGAACGACGCCGCCGTTGCGGGTTTTAAAGACGAGGGAAG
GGGGGACATCACGGCTGGATCCCAGGTAGGGGGCCGCGACGATGTGGGAG
TCAGCCTGGATGGTGCCAGGGTGAAGATTGTGGAGGTGATCGGGACGGGC
CAGAGCGGGTTCGATCGATTCTGCATCAAGCTCCAGGCCACCGAAAATGT
GGGTGAAACCGATCCATCGATGTCGGGTCCGGTCCGTCTCACCTGACGTG
ACCTAACCTGCCCTGTTCTATAGCCTGACCCTGGGGTGTACTTCCTACCT
TCCTTACCAAAGTTTTCGGTGTGTAATATTTCCGTTCTGCGCTGCTTGCA
AGAACAATGCCAAATCTGTATGAGCTTCGTTCGGATTGGATACTGGAAGA
CACTGTCTAACAATGTCGTGGTCTCTGCTCTGCTCTGCTCTGATTTGCTT
TGGCCCTCTCTTTCCGCCTCCGTTTTTGTTATATTGTTAATAATTATAAT
AATAGTCTGGCCGCGACGGTGAGGCGTCAATGGAACGCCGGGAGTGGGTG
ACGTGGCGACGCCTCATAGAGTTCGTCGCTCTGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:35327..35912+

>mRNA_F-serratus_M_contig818.19581.1 ID=mRNA_F-serratus_M_contig818.19581.1|Name=mRNA_F-serratus_M_contig818.19581.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig818:35327..35912+ (Fucus serratus male)
GGTGAAGTCGTGAACGACGCCGCCGTTGCGGGTTTTAAAGACGAGGGAAG
GGGGGACATCACGGCTGGATCCCAGGTAGGGGGCCGCGACGATGTGGGAG
TCAGCCTGGATGGTGCCAGGGTGAAGATTGTGGAGGTGATCGGGACGGGC
CAGAGCGGGTTCGATCGATTCTGCATCAAGCTCCAGGCCACCGAAAATGG
TGAAGTCGTGAACGACGCCGCCGTTGCGGGTTTTAAAGACGAGGGAAGGG
GGGACATCACGGCTGGATCCCAGGTAGGGGGCCGCGACGATGTGGGAGTC
AGCCTGGATGGTGCCAGGGTGAAGATTGTGGAGGTGATCGGGACGGGCCA
GAGCGGGTTCGATCGATTCTGCATCAAGCTCCAGGCCACCGAAAATTCTG
GCCGCGACGGTGAGGCGTCAATGGAACGCCGGGAGTGGGTGACGTGGCGA
CGCCTCATAGAGTTCGTCGCTCTGAGGTCTGGCCGCGACGGTGAGGCGTC
AATGGAACGCCGGGAGTGGGTGACGTGGCGACGCCTCATAGAGTTCGTCG
CTCTGAGG
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