mRNA_F-serratus_M_contig812.19522.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig812.19522.1
Unique NamemRNA_F-serratus_M_contig812.19522.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig812.19522.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.670e-15
Identity = 49/104 (47.12%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:    4 SYMQWGAEGGVWYGDGNPGRGDMN-------GEGMDQDEQWGQQRAGAFGAPPRWSGVSH--VAADFVRPADALGPGLEEHLPFIVAHTLVKVLRDPMLSVHYQ 288
            SY+QWGAEGGVW+GDG               G+G     QWG                      A  + PADALG GLEEHLPF+V HT+VKVLRDP+LS HYQ
Sbjct: 2030 SYIQWGAEGGVWFGDGGXXXXXXXXXXXXXXGQG-----QWGXXXXXXXXXXXXXXXXXXXXAGAGIMLPADALGTGLEEHLPFMVTHTMVKVLRDPLLSAHYQ 2128
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig812.19522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE8.670e-1547.12LysM domain-containing protein (Fragment) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig812contigF-serratus_M_contig812:123566..124401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size443
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig812.19522.1prot_F-serratus_M_contig812.19522.1Fucus serratus malepolypeptideF-serratus_M_contig812 123566..124392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.5216045-CDS-F-serratus_M_contig812:123565..1237181622932420.5216045-CDS-F-serratus_M_contig812:123565..123718Fucus serratus maleCDSF-serratus_M_contig812 123566..123718 -
1690964300.5303948-CDS-F-serratus_M_contig812:123565..1237181690964300.5303948-CDS-F-serratus_M_contig812:123565..123718Fucus serratus maleCDSF-serratus_M_contig812 123566..123718 -
1622932420.539565-CDS-F-serratus_M_contig812:124113..1243921622932420.539565-CDS-F-serratus_M_contig812:124113..124392Fucus serratus maleCDSF-serratus_M_contig812 124114..124392 -
1690964300.541802-CDS-F-serratus_M_contig812:124113..1243921690964300.541802-CDS-F-serratus_M_contig812:124113..124392Fucus serratus maleCDSF-serratus_M_contig812 124114..124392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.560317-UTR-F-serratus_M_contig812:124392..1244011622932420.560317-UTR-F-serratus_M_contig812:124392..124401Fucus serratus maleUTRF-serratus_M_contig812 124393..124401 -
1690964300.5519617-UTR-F-serratus_M_contig812:124392..1244011690964300.5519617-UTR-F-serratus_M_contig812:124392..124401Fucus serratus maleUTRF-serratus_M_contig812 124393..124401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig812.19522.1

>prot_F-serratus_M_contig812.19522.1 ID=prot_F-serratus_M_contig812.19522.1|Name=mRNA_F-serratus_M_contig812.19522.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MQWGAEGGVWYGDGNPGRGDMNGEGMDQDEQWGQQRAGAFGAPPRWSGVS
HVAADFVRPADALGPGLEEHLPFIVAHTLVKVLRDPMLSVHYQSAVDTSV
KVCCGSGGGPRLTEFALHNTGGAFASGSFVGSLGPGIGIGGVVG
back to top

mRNA from alignment at F-serratus_M_contig812:123566..124401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig812.19522.1 ID=mRNA_F-serratus_M_contig812.19522.1|Name=mRNA_F-serratus_M_contig812.19522.1|organism=Fucus serratus male|type=mRNA|length=836bp|location=Sequence derived from alignment at F-serratus_M_contig812:123566..124401- (Fucus serratus male)
GCGAGCTACATGCAATGGGGGGCGGAGGGCGGGGTATGGTACGGAGATGG
AAACCCTGGCCGAGGTGATATGAACGGAGAGGGGATGGACCAGGACGAGC
AGTGGGGGCAGCAGCGCGCTGGTGCCTTCGGTGCGCCGCCAAGATGGTCT
GGTGTATCGCACGTGGCTGCTGACTTCGTGCGGCCGGCGGATGCGCTTGG
GCCAGGGTTGGAGGAGCACTTGCCTTTCATAGTGGCGCACACGCTGGTGA
AGGTCCTGCGGGACCCGATGCTGAGCGTGCACTACCAGGTTCGACCCTTT
CTTCATTTATGTATTATGTTGTGATTTTTGTAACGCCATCTTGAAGCGAC
CAAGAGGTCAGGTGAAGCAGAAGGGGCGTGGGTGTGAACGGTGTTAAAAA
AAATGTGTTTTTCCTTGATGTTCTTGCCCATGATCTCTGAGGGAAAAGCA
TGACTGGTGGATGCACGACGACGGGTGTTTTGCCGGGCCCTCCACTTCTG
CCCTCCGCTACGCTACGGCCCTTGGGCACGAGAGAGCCGCGGGCGGCCAC
CGATATGCTAGCGTTTTGTTCGGACTTGTGCCCTTCATCCATATATTGGC
CCCCTCCTCCAGCACTACTTCACCAAGCCCCCCTCTCTCCCACCTCCATC
CCCCCCCCCCCCCCCACCCCGCTTTGGTATCAGTCGGCGGTGGACACGTC
AGTCAAAGTCTGCTGCGGCTCGGGCGGCGGTCCGCGGCTGACGGAGTTCG
CGCTCCATAATACAGGAGGCGCGTTCGCGTCGGGGAGCTTTGTCGGGAGC
TTGGGTCCCGGCATTGGCATAGGTGGCGTCGTTGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig812:123566..124401-

>mRNA_F-serratus_M_contig812.19522.1 ID=mRNA_F-serratus_M_contig812.19522.1|Name=mRNA_F-serratus_M_contig812.19522.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig812:123566..124401- (Fucus serratus male)
ATGCAATGGGGGGCGGAGGGCGGGGTATGGTACGGAGATGGAAACCCTGG
CCGAGGTGATATGAACGGAGAGGGGATGGACCAGGACGAGCAGTGGGGGC
AGCAGCGCGCTGGTGCCTTCGGTGCGCCGCCAAGATGGTCTGGTGTATCG
CACGTGGCTGCTGACTTCGTGCGGCCGGCGGATGCGCTTGGGCCAGGGTT
GGAGGAGCACTTGCCTTTCATAGTGGCGCACACGCTGGTGAAGGTCCTGC
GGGACCCGATGCTGAGCGTGCACTACCAGATGCAATGGGGGGCGGAGGGC
GGGGTATGGTACGGAGATGGAAACCCTGGCCGAGGTGATATGAACGGAGA
GGGGATGGACCAGGACGAGCAGTGGGGGCAGCAGCGCGCTGGTGCCTTCG
GTGCGCCGCCAAGATGGTCTGGTGTATCGCACGTGGCTGCTGACTTCGTG
CGGCCGGCGGATGCGCTTGGGCCAGGGTTGGAGGAGCACTTGCCTTTCAT
AGTGGCGCACACGCTGGTGAAGGTCCTGCGGGACCCGATGCTGAGCGTGC
ACTACCAGTCGGCGGTGGACACGTCAGTCAAAGTCTGCTGCGGCTCGGGC
GGCGGTCCGCGGCTGACGGAGTTCGCGCTCCATAATACAGGAGGCGCGTT
CGCGTCGGGGAGCTTTGTCGGGAGCTTGGGTCCCGGCATTGGCATAGGTG
GCGTCGTTGGGTCGGCGGTGGACACGTCAGTCAAAGTCTGCTGCGGCTCG
GGCGGCGGTCCGCGGCTGACGGAGTTCGCGCTCCATAATACAGGAGGCGC
GTTCGCGTCGGGGAGCTTTGTCGGGAGCTTGGGTCCCGGCATTGGCATAG
GTGGCGTCGTTGGG
back to top