mRNA_F-serratus_M_contig81.19505.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig81.19505.1
Unique NamemRNA_F-serratus_M_contig81.19505.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig81.19505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig81contigF-serratus_M_contig81:734695..735543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size473
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932413.0800724-CDS-F-serratus_M_contig81:734694..7349311622932413.0800724-CDS-F-serratus_M_contig81:734694..734931Fucus serratus maleCDSF-serratus_M_contig81 734695..734931 +
1690964296.6452324-CDS-F-serratus_M_contig81:734694..7349311690964296.6452324-CDS-F-serratus_M_contig81:734694..734931Fucus serratus maleCDSF-serratus_M_contig81 734695..734931 +
1622932413.0974772-CDS-F-serratus_M_contig81:735309..7355431622932413.0974772-CDS-F-serratus_M_contig81:735309..735543Fucus serratus maleCDSF-serratus_M_contig81 735310..735543 +
1690964296.663566-CDS-F-serratus_M_contig81:735309..7355431690964296.663566-CDS-F-serratus_M_contig81:735309..735543Fucus serratus maleCDSF-serratus_M_contig81 735310..735543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig81.19505.1prot_F-serratus_M_contig81.19505.1Fucus serratus malepolypeptideF-serratus_M_contig81 734695..735543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig81.19505.1

>prot_F-serratus_M_contig81.19505.1 ID=prot_F-serratus_M_contig81.19505.1|Name=mRNA_F-serratus_M_contig81.19505.1|organism=Fucus serratus male|type=polypeptide|length=157bp
MSSSVPARWEDTKYGRPRAAAVMSLAGVETDRSSIERVVSGQRGVPEEDG
MARKMAGTSRGRSSLPPDIGSTGLGAEEQKPRSRSLDGFEEDGSPLEFPA
VGTTIPFPRGHVSDGLSRRDASDIQEAPEGQRNRPSTWALDRDGHISTLF
APVQSMW
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mRNA from alignment at F-serratus_M_contig81:734695..735543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig81.19505.1 ID=mRNA_F-serratus_M_contig81.19505.1|Name=mRNA_F-serratus_M_contig81.19505.1|organism=Fucus serratus male|type=mRNA|length=849bp|location=Sequence derived from alignment at F-serratus_M_contig81:734695..735543+ (Fucus serratus male)
ATGTCGTCGAGCGTTCCCGCGAGATGGGAGGATACGAAATATGGACGGCC
TCGGGCGGCGGCGGTGATGTCCCTGGCTGGTGTGGAGACAGACAGGTCTA
GTATTGAGCGTGTCGTGTCCGGTCAGCGGGGTGTCCCAGAAGAGGACGGG
ATGGCGCGAAAGATGGCCGGGACAAGTCGAGGACGATCCTCTCTCCCGCC
AGACATTGGTTCGACAGGGCTCGGGGCAGAAGAACAGGTGAGACCTTCTT
CGTTTTCGGTGTCCGTCGCTCTTTGTTAGAGATATCGGATACCGGGTCCG
ATGGATGGACGTATGCGTGCCGCTGCTCCACTTGCCAACAATATGAAAAG
TGGTTATAAGTACATACAAGTACACCTTGGTTGAAAGTACACTTTGGTTC
GTCGATTGCTCCTCCGCGCCGGATATGAATCTCTCGGATTCATTTGTTGT
TGCGATGTGTGTATTCGTTTTGTATACCTATGCGTACAGTTGATAGTACG
TGTATTGTTTGCCCCTTGTGTATCTTGTGTATCTTGTTTATCTTGTGTAT
ACTTTAAATTGTAGAGCAACGCGCGTTGTCTGTTGTTCCTTGTGTATGCG
CATGGAATGGAACAGAAGCCACGCAGTCGGAGCTTGGACGGTTTTGAAGA
GGACGGCTCCCCTCTCGAGTTTCCAGCGGTGGGTACGACCATACCCTTCC
CGAGAGGACATGTCAGCGACGGTCTCTCCCGAAGGGACGCATCTGACATC
CAGGAGGCTCCCGAGGGGCAGCGAAATAGGCCCAGCACTTGGGCGCTGGA
TAGGGATGGTCACATCAGTACCTTGTTCGCTCCCGTCCAGAGTATGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig81:734695..735543+

>mRNA_F-serratus_M_contig81.19505.1 ID=mRNA_F-serratus_M_contig81.19505.1|Name=mRNA_F-serratus_M_contig81.19505.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig81:734695..735543+ (Fucus serratus male)
ATGTCGTCGAGCGTTCCCGCGAGATGGGAGGATACGAAATATGGACGGCC
TCGGGCGGCGGCGGTGATGTCCCTGGCTGGTGTGGAGACAGACAGGTCTA
GTATTGAGCGTGTCGTGTCCGGTCAGCGGGGTGTCCCAGAAGAGGACGGG
ATGGCGCGAAAGATGGCCGGGACAAGTCGAGGACGATCCTCTCTCCCGCC
AGACATTGGTTCGACAGGGCTCGGGGCAGAAGAACAGATGTCGTCGAGCG
TTCCCGCGAGATGGGAGGATACGAAATATGGACGGCCTCGGGCGGCGGCG
GTGATGTCCCTGGCTGGTGTGGAGACAGACAGGTCTAGTATTGAGCGTGT
CGTGTCCGGTCAGCGGGGTGTCCCAGAAGAGGACGGGATGGCGCGAAAGA
TGGCCGGGACAAGTCGAGGACGATCCTCTCTCCCGCCAGACATTGGTTCG
ACAGGGCTCGGGGCAGAAGAACAGAAGCCACGCAGTCGGAGCTTGGACGG
TTTTGAAGAGGACGGCTCCCCTCTCGAGTTTCCAGCGGTGGGTACGACCA
TACCCTTCCCGAGAGGACATGTCAGCGACGGTCTCTCCCGAAGGGACGCA
TCTGACATCCAGGAGGCTCCCGAGGGGCAGCGAAATAGGCCCAGCACTTG
GGCGCTGGATAGGGATGGTCACATCAGTACCTTGTTCGCTCCCGTCCAGA
GTATGTGGAAGCCACGCAGTCGGAGCTTGGACGGTTTTGAAGAGGACGGC
TCCCCTCTCGAGTTTCCAGCGGTGGGTACGACCATACCCTTCCCGAGAGG
ACATGTCAGCGACGGTCTCTCCCGAAGGGACGCATCTGACATCCAGGAGG
CTCCCGAGGGGCAGCGAAATAGGCCCAGCACTTGGGCGCTGGATAGGGAT
GGTCACATCAGTACCTTGTTCGCTCCCGTCCAGAGTATGTGG
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