mRNA_F-serratus_M_contig8.19325.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19325.1
Unique NamemRNA_F-serratus_M_contig8.19325.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:854035..855056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932377.6085603-CDS-F-serratus_M_contig8:854034..8542201622932377.6085603-CDS-F-serratus_M_contig8:854034..854220Fucus serratus maleCDSF-serratus_M_contig8 854035..854220 -
1690964278.6495879-CDS-F-serratus_M_contig8:854034..8542201690964278.6495879-CDS-F-serratus_M_contig8:854034..854220Fucus serratus maleCDSF-serratus_M_contig8 854035..854220 -
1622932377.6286206-CDS-F-serratus_M_contig8:854939..8550561622932377.6286206-CDS-F-serratus_M_contig8:854939..855056Fucus serratus maleCDSF-serratus_M_contig8 854940..855056 -
1690964278.6582716-CDS-F-serratus_M_contig8:854939..8550561690964278.6582716-CDS-F-serratus_M_contig8:854939..855056Fucus serratus maleCDSF-serratus_M_contig8 854940..855056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19325.1prot_F-serratus_M_contig8.19325.1Fucus serratus malepolypeptideF-serratus_M_contig8 854035..855056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19325.1

>prot_F-serratus_M_contig8.19325.1 ID=prot_F-serratus_M_contig8.19325.1|Name=mRNA_F-serratus_M_contig8.19325.1|organism=Fucus serratus male|type=polypeptide|length=101bp
KKGGERRARPAEKTGGRKGRPPKTMGWESSGGGGSASSMELVEDEKLFSQ
EARSGDIESGQAPKEEGSSAVTLPARPVPVHRMQVPPQAVGDLLMVWDFL
K
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mRNA from alignment at F-serratus_M_contig8:854035..855056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19325.1 ID=mRNA_F-serratus_M_contig8.19325.1|Name=mRNA_F-serratus_M_contig8.19325.1|organism=Fucus serratus male|type=mRNA|length=1022bp|location=Sequence derived from alignment at F-serratus_M_contig8:854035..855056- (Fucus serratus male)
AAAAAGGGAGGGGAACGGAGGGCTAGGCCGGCGGAGAAAACGGGCGGTAG
GAAAGGACGGCCACCGAAAACAATGGGCTGGGAATCCTCGGGAGGCGGGG
GGAGCGCCAGCAGCATGGTGAGGGAACAGGGGTTTTGGCGCACCGTTTTT
TTCTCGGGATGTAATTGCGTTTATTAACCTGTCATCGTCGTATTCGGTTG
ACATTGTTTTTCGCCTTAAGAGCGGAAGGCGGATGCTCTCTCAAGCCGGT
AATATTTGTACTTTTGGGAAGCATTTCTATCGTGCGGTGAATGTGTTCAT
TCAAGCATAAACTCAGCCGCGTGTGAAAGCGGTGATGGACCATATTCACC
GGAGGGTTACGGCCGTTTTCGACCGTTCCTGTCCCAAGCGAGCGATCTCC
ACGAGCAAGACCATGAGTGAAAACTCGATGCCAAACGCTTTCTTTCATGC
ATATAACTTTTCAGCTGGGGATGATTACACATGCAATAGACTTGACCTAA
GGCGATGACATGTAAAAATGCCGCAGGAACATAATCCCCCTGAAAAAAAA
ATGTAAAAACAGTAGCACGCTTTGAGCGACCTAAAAATTAAAAGCAGGAC
TCCTGTCATCAAAACAGCGTGAGCCGAAAACACATTTCCAGCGAAAAATA
TCAACGCCGACACTATTATTGAATATAAATAACTGCGCAACCCGAGTTAA
AAGTAGAGGAAGCGGCGCACCCATTTGGGGGGCCATAAAAGCAAGTCAGC
AGCACTTTTTTTGTACTTTCACGGTCGTGCTCGACTCCGCGTCCCCGTAT
CTTCTGCTTCCAATCCTGGCGTCCGTCCTTGCGCAGGAACTCGTGGAGGA
TGAGAAACTTTTCTCGCAGGAGGCACGGAGCGGAGATATAGAGAGTGGGC
AGGCGCCAAAGGAAGAGGGGTCGTCGGCCGTGACGCTCCCGGCGAGGCCT
GTCCCCGTCCACCGTATGCAGGTCCCCCCCCAGGCGGTCGGAGACCTGCT
GATGGTGTGGGATTTCTTGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:854035..855056-

>mRNA_F-serratus_M_contig8.19325.1 ID=mRNA_F-serratus_M_contig8.19325.1|Name=mRNA_F-serratus_M_contig8.19325.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig8:854035..855056- (Fucus serratus male)
AAAAAGGGAGGGGAACGGAGGGCTAGGCCGGCGGAGAAAACGGGCGGTAG
GAAAGGACGGCCACCGAAAACAATGGGCTGGGAATCCTCGGGAGGCGGGG
GGAGCGCCAGCAGCATGAAAAAGGGAGGGGAACGGAGGGCTAGGCCGGCG
GAGAAAACGGGCGGTAGGAAAGGACGGCCACCGAAAACAATGGGCTGGGA
ATCCTCGGGAGGCGGGGGGAGCGCCAGCAGCATGGAACTCGTGGAGGATG
AGAAACTTTTCTCGCAGGAGGCACGGAGCGGAGATATAGAGAGTGGGCAG
GCGCCAAAGGAAGAGGGGTCGTCGGCCGTGACGCTCCCGGCGAGGCCTGT
CCCCGTCCACCGTATGCAGGTCCCCCCCCAGGCGGTCGGAGACCTGCTGA
TGGTGTGGGATTTCTTGAAGGAACTCGTGGAGGATGAGAAACTTTTCTCG
CAGGAGGCACGGAGCGGAGATATAGAGAGTGGGCAGGCGCCAAAGGAAGA
GGGGTCGTCGGCCGTGACGCTCCCGGCGAGGCCTGTCCCCGTCCACCGTA
TGCAGGTCCCCCCCCAGGCGGTCGGAGACCTGCTGATGGTGTGGGATTTC
TTGAAG
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