mRNA_F-serratus_M_contig8.19292.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19292.1
Unique NamemRNA_F-serratus_M_contig8.19292.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.300e-50
Identity = 90/126 (71.43%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  228 SAEDVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPRIQ 605
            SAEDV+RG HLD+A++K GTVE+MCP  E  RR+   DL ILE EHP  +MP   DG P RL   DDLVVKRH RAAAG DISKPELLRTPLWLARTVDHLV+ CMDKGP GGGDPA  W DPRIQ
Sbjct:  238 SAEDVQRGSHLDDAKIKQGTVEAMCPPEEMSRRVP-GDLHILEKEHPDFFMPDLGDGGPPRLWLHDDLVVKRHQRAAAGMDISKPELLRTPLWLARTVDHLVMICMDKGPHGGGDPALVWDDPRIQ 362          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: W9X5Z9_9EURO (SAC3_GANP domain-containing protein n=2 Tax=Cladophialophora TaxID=82105 RepID=W9X5Z9_9EURO)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-7
Identity = 45/124 (36.29%), Postives = 57/124 (45.97%), Query Frame = 3
Query:  237 DVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILE---TEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPR 599
            D E+   LD+A   VGT   MCPE ER  RI    +D  E    E  G  MP            A+D +VKR  R+AAG D   P  +RTP  L RT+D+L+   +  G +      F W   R
Sbjct:  170 DPEKKTSLDKAITPVGTCTEMCPEFERVERIVQNMVDKAEKVRNEETGKDMP------------AEDRMVKRFRRSAAGYDEQLPSDIRTPATLKRTLDYLIDKVIGGGERLATVHKFVWDRTR 281          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A178ZN29_9EURO (SAC3_GANP domain-containing protein n=1 Tax=Fonsecaea erecta TaxID=1367422 RepID=A0A178ZN29_9EURO)

HSP 1 Score: 60.8 bits (146), Expect = 2.450e-7
Identity = 50/144 (34.72%), Postives = 64/144 (44.44%), Query Frame = 3
Query:  192 TTSPSREDREAPSAED-----VERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILE---TEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPR 599
            T   SRE+  A +  D      E+   LD+A   VGT   MCPE ER  RI    +D  E    E  G  MP            A+D +VKR  R+AAG D   P  +RTP  L RT+D+L+   +  G +      F W   R
Sbjct:  147 TLKQSREEERAKAIRDGFLADPEKKTSLDKAITPVGTCTEMCPEFERVERIVQNMVDKAEKVRNEETGKDMP------------AEDRMVKRFRRSAAGYDEQLPSDIRTPETLKRTLDYLIDKVVGGGERLATVHKFVWDRTR 278          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A0D2K1I2_9EURO (SAC3_GANP domain-containing protein n=2 Tax=Fonsecaea multimorphosa TaxID=979981 RepID=A0A0D2K1I2_9EURO)

HSP 1 Score: 60.1 bits (144), Expect = 4.480e-7
Identity = 45/124 (36.29%), Postives = 57/124 (45.97%), Query Frame = 3
Query:  237 DVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILE---TEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPR 599
            D E+   LD+A   VGT   MCPE ER  RI    +D  E    E  G  MP            A+D +VKR  R+AAG D   P  +RTP  L RT+D+L+   +  G +      F W   R
Sbjct:  171 DPEKKTSLDKAITPVGTCTEMCPEFERVERIVQNMVDKAEKVRNEETGKDMP------------AEDRMVKRFRRSAAGYDEQLPSDIRTPETLKRTLDYLLDKVIGGGERLATVHKFVWDRTR 282          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A0D2C889_9EURO (SAC3_GANP domain-containing protein n=3 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D2C889_9EURO)

HSP 1 Score: 58.5 bits (140), Expect = 1.500e-6
Identity = 44/124 (35.48%), Postives = 57/124 (45.97%), Query Frame = 3
Query:  237 DVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILE---TEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPR 599
            D E+   LD+A   VGT   MCPE ER  RI    +D  E    E  G  +P            A+D +VKR  R+AAG D   P  +RTP  L RT+D+L+   +  G +      F W   R
Sbjct:  168 DPEKKTSLDKAITPVGTCTEMCPEFERVERIVQNMVDKAEKVRNEETGKDIP------------AEDRMVKRFRRSAAGYDEQLPSDIRTPETLERTLDYLLDKVIGGGERLATVHKFVWDRTR 279          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A5J4Z7I1_PORPP (Germinal-center associated nuclear protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7I1_PORPP)

HSP 1 Score: 58.5 bits (140), Expect = 1.520e-6
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  258 LDEAEVKVGTVESMCPEGERRRRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDL-VVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAF 581
            L+++E  VGT   MCP  ER  R + +DL I E   PG        GA       D    VK++ R+AA ++ ++PE +R P  L RT+D+L+   +DKG +      F
Sbjct:  476 LEQSECLVGTCLDMCPAKERIDRQEQRDLSIFEIL-PGT-------GANGEASLVDHAHAVKKYARSAAASEAARPEQIRPPQVLVRTMDYLIDEILDKGERNFAGATF 576          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: V9D9L2_9EURO (SAC3_GANP domain-containing protein n=2 Tax=Cladophialophora carrionii TaxID=86049 RepID=V9D9L2_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-6
Identity = 44/118 (37.29%), Postives = 56/118 (47.46%), Query Frame = 3
Query:  192 TTSPSREDREAPSAED-----VERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHL 530
            T   SRE+  A +  D      E+   LD+A   VGT   MCP  ER  RI    +D  E E         RD    +   A+D +VKR  R+AAG D   P  +RTP  L RT+D+L
Sbjct:  149 TLKQSREEERAKAIRDGFLADPEKKTSLDKAITPVGTCTDMCPRFERVERIVQNMVDRAEKE---------RDDEDGKDWPAEDRMVKRFRRSAAGYDEQLPSDIRTPETLKRTLDYL 257          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: W9W3I8_9EURO (SAC3_GANP domain-containing protein n=1 Tax=Cladophialophora yegresii CBS 114405 TaxID=1182544 RepID=W9W3I8_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 2.030e-6
Identity = 44/118 (37.29%), Postives = 56/118 (47.46%), Query Frame = 3
Query:  192 TTSPSREDREAPSAED-----VERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHL 530
            T   SRE+  A +  D      E+   LD+A   VGT   MCP  ER  RI    +D  E E         RD    +   A+D +VKR  R+AAG D   P  +RTP  L RT+D+L
Sbjct:  120 TLKQSREEERAKAIRDGFLADPEKKTSLDKAITPVGTCTDMCPRFERVERIVQNMVDRAEKE---------RDDEDGKDWPAEDRMVKRFRRSAAGYDEQLPSDIRTPETLKRTLDYL 228          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A4U0XZJ1_9PEZI (SAC3_GANP domain-containing protein n=1 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4U0XZJ1_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 3.680e-6
Identity = 40/122 (32.79%), Postives = 56/122 (45.90%), Query Frame = 3
Query:  237 DVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPRI 602
            D +R + L EA   VGT + MC E ER  RI  KD+   E +      P   +  P + + A++ +VK+  RAAAG D   P  LR P+ L RT ++L    +           F W   R 
Sbjct:  121 DPDRPRTLAEAITPVGTCQDMCSEFERLERIVQKDVWGPEVD------PQSLNSGPLKQIPAEERMVKKFRRAAAGIDEQLPSDLRPPVVLLRTCNYLFDDLIGNAESLASVHHFVWDRTRA 236          
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Match: A0A0D2GBA6_9EURO (SAC3_GANP domain-containing protein n=3 Tax=Fonsecaea TaxID=40354 RepID=A0A0D2GBA6_9EURO)

HSP 1 Score: 56.2 bits (134), Expect = 9.140e-6
Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 3
Query:  237 DVERGKHLDEAEVKVGTVESMCPEGERRRRIDHKDLDILE---TEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTDISKPELLRTPLWLARTVDHLV 533
            D E+   LD+A   VGT   MCPE ER  RI    +D  E    E  G  MP            A++ +VKR  R+AAG D   P  +RTP  L RT+D+L+
Sbjct:  161 DPEKKTSLDKAITPVGTCTEMCPEFERVERIVQNMVDKAEKVRNEETGKDMP------------AEERMVKRFRRSAAGYDEQLPSDIRTPETLKRTLDYLL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G867_ECTSI2.300e-5071.43PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
W9X5Z9_9EURO1.340e-736.29SAC3_GANP domain-containing protein n=2 Tax=Cladop... [more]
A0A178ZN29_9EURO2.450e-734.72SAC3_GANP domain-containing protein n=1 Tax=Fonsec... [more]
A0A0D2K1I2_9EURO4.480e-736.29SAC3_GANP domain-containing protein n=2 Tax=Fonsec... [more]
A0A0D2C889_9EURO1.500e-635.48SAC3_GANP domain-containing protein n=3 Tax=Cladop... [more]
A0A5J4Z7I1_PORPP1.520e-634.86Germinal-center associated nuclear protein n=1 Tax... [more]
V9D9L2_9EURO2.020e-637.29SAC3_GANP domain-containing protein n=2 Tax=Cladop... [more]
W9W3I8_9EURO2.030e-637.29SAC3_GANP domain-containing protein n=1 Tax=Cladop... [more]
A0A4U0XZJ1_9PEZI3.680e-632.79SAC3_GANP domain-containing protein n=1 Tax=Cryomy... [more]
A0A0D2GBA6_9EURO9.140e-639.22SAC3_GANP domain-containing protein n=3 Tax=Fonsec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:348721..349325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue6.2e-44
Seed eggNOG ortholog2880.D7G867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA transport
EggNOG OGsCOG5079@1,KOG1860@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size585
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.1119478-UTR-F-serratus_M_contig8:348720..3487401622932373.1119478-UTR-F-serratus_M_contig8:348720..348740Fucus serratus maleUTRF-serratus_M_contig8 348721..348740 +
1690964276.3689184-UTR-F-serratus_M_contig8:348720..3487401690964276.3689184-UTR-F-serratus_M_contig8:348720..348740Fucus serratus maleUTRF-serratus_M_contig8 348721..348740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.1264584-CDS-F-serratus_M_contig8:348740..3493251622932373.1264584-CDS-F-serratus_M_contig8:348740..349325Fucus serratus maleCDSF-serratus_M_contig8 348741..349325 +
1690964276.381202-CDS-F-serratus_M_contig8:348740..3493251690964276.381202-CDS-F-serratus_M_contig8:348740..349325Fucus serratus maleCDSF-serratus_M_contig8 348741..349325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19292.1prot_F-serratus_M_contig8.19292.1Fucus serratus malepolypeptideF-serratus_M_contig8 348741..349325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19292.1

>prot_F-serratus_M_contig8.19292.1 ID=prot_F-serratus_M_contig8.19292.1|Name=mRNA_F-serratus_M_contig8.19292.1|organism=Fucus serratus male|type=polypeptide|length=195bp
MGSFDGPPSGASDPPAFSGGNNKVSDVISTDERDISTRLDAKAQRARRFA
DRRGGGGTTSPSREDREAPSAEDVERGKHLDEAEVKVGTVESMCPEGERR
RRIDHKDLDILETEHPGLYMPHHRDGAPRRLMTADDLVVKRHMRAAAGTD
ISKPELLRTPLWLARTVDHLVLHCMDKGPQGGGDPAFAWQDPRIQ
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mRNA from alignment at F-serratus_M_contig8:348721..349325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19292.1 ID=mRNA_F-serratus_M_contig8.19292.1|Name=mRNA_F-serratus_M_contig8.19292.1|organism=Fucus serratus male|type=mRNA|length=605bp|location=Sequence derived from alignment at F-serratus_M_contig8:348721..349325+ (Fucus serratus male)
GTCCCGTAGGGAGCAAGATAATGGGCAGTTTCGATGGACCGCCATCGGGA GCATCGGACCCGCCTGCCTTTTCGGGAGGAAATAATAAGGTGTCTGACGT GATCAGTACCGATGAGCGAGATATTTCCACGCGATTGGATGCAAAGGCTC AAAGAGCGCGAAGATTTGCCGACCGGCGCGGAGGCGGCGGGACCACCAGC CCTTCACGAGAAGATCGCGAGGCACCAAGCGCAGAAGACGTCGAAAGAGG AAAACACCTTGACGAGGCGGAGGTCAAGGTGGGGACCGTTGAGTCAATGT GCCCAGAGGGCGAGCGCAGGCGCCGAATCGACCACAAGGATCTCGACATC CTGGAAACTGAGCACCCCGGCTTGTATATGCCGCATCATAGGGACGGCGC ACCTAGGCGTTTGATGACAGCAGACGATCTCGTGGTGAAGAGGCACATGC GTGCGGCAGCGGGGACGGACATCAGCAAGCCGGAGCTTTTGCGGACCCCG CTATGGCTGGCGCGCACCGTCGATCACTTGGTGCTTCACTGCATGGATAA GGGACCACAGGGAGGCGGAGATCCAGCCTTTGCTTGGCAAGACCCGCGCA TCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:348721..349325+

>mRNA_F-serratus_M_contig8.19292.1 ID=mRNA_F-serratus_M_contig8.19292.1|Name=mRNA_F-serratus_M_contig8.19292.1|organism=Fucus serratus male|type=CDS|length=1170bp|location=Sequence derived from alignment at F-serratus_M_contig8:348721..349325+ (Fucus serratus male)
ATGGGCAGTTTCGATGGACCGCCATCGGGAGCATCGGACCCGCCTGCCTT
TTCGGGAGGAAATAATAAGGTGTCTGACGTGATCAGTACCGATGAGCGAG
ATATTTCCACGCGATTGGATGCAAAGGCTCAAAGAGCGCGAAGATTTGCC
GACCGGCGCGGAGGCGGCGGGACCACCAGCCCTTCACGAGAAGATCGCGA
GGCACCAAGCGCAGAAGACGTCGAAAGAGGAAAACACCTTGACGAGGCGG
AGGTCAAGGTGGGGACCGTTGAGTCAATGTGCCCAGAGGGCGAGCGCAGG
CGCCGAATCGACCACAAGGATCTCGACATCCTGGAAACTGAGCACCCCGG
CTTGTATATGCCGCATCATAGGGACGGCGCACCTAGGCGTTTGATGACAG
CAGACGATCTCGTGGTGAAGAGGCACATGCGTGCGGCAGCGGGGACGGAC
ATCAGCAAGCCGGAGCTTTTGCGGACCCCGCTATGGCTGGCGCGCACCGT
CGATCACTTGGTGCTTCACTGCATGGATAAGGGACCACAGGGAGGCGGAG
ATCCAGCCTTTGCTTGGCAAGACCCGCGCATCCAGATGGGCAGTTTCGAT
GGACCGCCATCGGGAGCATCGGACCCGCCTGCCTTTTCGGGAGGAAATAA
TAAGGTGTCTGACGTGATCAGTACCGATGAGCGAGATATTTCCACGCGAT
TGGATGCAAAGGCTCAAAGAGCGCGAAGATTTGCCGACCGGCGCGGAGGC
GGCGGGACCACCAGCCCTTCACGAGAAGATCGCGAGGCACCAAGCGCAGA
AGACGTCGAAAGAGGAAAACACCTTGACGAGGCGGAGGTCAAGGTGGGGA
CCGTTGAGTCAATGTGCCCAGAGGGCGAGCGCAGGCGCCGAATCGACCAC
AAGGATCTCGACATCCTGGAAACTGAGCACCCCGGCTTGTATATGCCGCA
TCATAGGGACGGCGCACCTAGGCGTTTGATGACAGCAGACGATCTCGTGG
TGAAGAGGCACATGCGTGCGGCAGCGGGGACGGACATCAGCAAGCCGGAG
CTTTTGCGGACCCCGCTATGGCTGGCGCGCACCGTCGATCACTTGGTGCT
TCACTGCATGGATAAGGGACCACAGGGAGGCGGAGATCCAGCCTTTGCTT
GGCAAGACCCGCGCATCCAG
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