mRNA_F-serratus_M_contig797.19269.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig797.19269.1
Unique NamemRNA_F-serratus_M_contig797.19269.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig797.19269.1 vs. uniprot
Match: A0A6H5KRC0_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.480e-43
Identity = 103/238 (43.28%), Postives = 142/238 (59.66%), Query Frame = 3 
Query:   87 QRRLLRAYAWVRSSVALTRTPVT---ATAMKSAVNHLSVVGVGRLMTPRDCDFILAEAQGSAEWYPWEGDLGEECTAKCLEDLPDSRALWEGSAGEYVRARIARNYGVRQSAVVSDTSDVFVCKAPLS-DYVRVE-------------SEALNLAARVRQNDDRNGRTV----------SADFRRSRSLVTFSIQLSPRDAEIPS-WVLCFEQQGRCVMPVGQGSGLVFSGKMRHASL 716
            +R L R YA  RS+ AL+RT  +   AT++ +  N L  VG+G LM+PRDC+ I+ EA    +W PW+GDLG+      LE LP SRALW+G AG+ VRAR+A  YGV++S++V +   +FVCK  L+ D +R E              EA++ AA                       ++DFRRSRSL+TFS+ +S  DA +P  W +C EQ+G C  P GQG+G++FSGK+RHASL
Sbjct:   59 RRNLRRLYARARSTWALSRTQPSYPDATSLPAG-NPLMRVGLGGLMSPRDCNTIVREALQVDDWTPWDGDLGKHALGTSLEKLPRSRALWDGKAGDRVRARVAGLYGVQESSIVVNA--LFVCKVGLNVDGLRDEVLREGQGRSVGTLHEAVDRAAAXXXXXXXXXXXXXXXXXQLSIEASDFRRSRSLLTFSVAISTEDALLPCPWAVCLEQRGECFRPGGQGTGVIFSGKLRHASL 293
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BLAST of mRNA_F-serratus_M_contig797.19269.1 vs. uniprot
Match: D8LFR9_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.580e-15
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 3 
Query:   96 LLRAYAWVRSSVALTRTPVTATAMKS--AVNHLSVVGVGRLMTPRDCDFILAEAQGSAEWYPWEGDLGEECTAKCLEDLPDSRALWEGSAGEYVR 374
            L R YA  RS+ AL+RTP ++    S  A N L  VG+G L++PRDC+ I+ EA    +W PW+GDLG       LE+LP SRALW+G  GE  R
Sbjct:   62 LRRLYARARSAWALSRTPTSSPDATSLPAGNSLMRVGLGGLISPRDCNTIVREALKVDDWAPWDGDLGTRALGTSLENLPLSRALWDGKRGECFR 156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig797.19269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRC0_9PHAE2.480e-4343.28N-acetyltransferase domain-containing protein n=1 ... [more]
D8LFR9_ECTSI2.580e-1548.42N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig797contigF-serratus_M_contig797:322602..323338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-01_001170.1
Exons1
Model size739
Cds size732
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932367.3994677-UTR-F-serratus_M_contig797:322601..3226061622932367.3994677-UTR-F-serratus_M_contig797:322601..322606Fucus serratus maleUTRF-serratus_M_contig797 322602..322606 +
1690964274.1059217-UTR-F-serratus_M_contig797:322601..3226061690964274.1059217-UTR-F-serratus_M_contig797:322601..322606Fucus serratus maleUTRF-serratus_M_contig797 322602..322606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932367.4136581-CDS-F-serratus_M_contig797:322606..3233381622932367.4136581-CDS-F-serratus_M_contig797:322606..323338Fucus serratus maleCDSF-serratus_M_contig797 322607..323338 +
1690964274.1155329-CDS-F-serratus_M_contig797:322606..3233381690964274.1155329-CDS-F-serratus_M_contig797:322606..323338Fucus serratus maleCDSF-serratus_M_contig797 322607..323338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig797.19269.1prot_F-serratus_M_contig797.19269.1Fucus serratus malepolypeptideF-serratus_M_contig797 322607..323338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig797.19269.1

>prot_F-serratus_M_contig797.19269.1 ID=prot_F-serratus_M_contig797.19269.1|Name=mRNA_F-serratus_M_contig797.19269.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MMSGRHLRRERGERNSSGSRLGKEETLQRRLLRAYAWVRSSVALTRTPVT
ATAMKSAVNHLSVVGVGRLMTPRDCDFILAEAQGSAEWYPWEGDLGEECT
AKCLEDLPDSRALWEGSAGEYVRARIARNYGVRQSAVVSDTSDVFVCKAP
LSDYVRVESEALNLAARVRQNDDRNGRTVSADFRRSRSLVTFSIQLSPRD
AEIPSWVLCFEQQGRCVMPVGQGSGLVFSGKMRHASLATHFQAA
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mRNA from alignment at F-serratus_M_contig797:322602..323338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig797.19269.1 ID=mRNA_F-serratus_M_contig797.19269.1|Name=mRNA_F-serratus_M_contig797.19269.1|organism=Fucus serratus male|type=mRNA|length=737bp|location=Sequence derived from alignment at F-serratus_M_contig797:322602..323338+ (Fucus serratus male)
CAGAGATGATGTCTGGAAGGCATCTGCGCAGAGAGAGAGGAGAGAGAAAT
TCGTCGGGCAGCAGGTTGGGAAAAGAAGAGACATTGCAACGACGACTACT
GCGAGCGTACGCTTGGGTCCGTTCCTCCGTGGCACTCACGCGCACGCCTG
TAACAGCAACTGCGATGAAGTCTGCTGTGAATCACCTTTCGGTCGTTGGC
GTCGGGCGCTTGATGACTCCTCGGGACTGCGATTTCATCCTTGCCGAGGC
GCAAGGATCGGCGGAATGGTATCCATGGGAGGGTGATCTGGGCGAGGAAT
GCACGGCAAAATGTCTCGAGGATCTCCCGGATTCGCGAGCTCTATGGGAA
GGAAGCGCAGGGGAATATGTCCGTGCTCGCATCGCCCGAAATTATGGTGT
GCGGCAAAGCGCGGTCGTCTCTGATACCAGCGACGTCTTTGTGTGCAAAG
CTCCGCTCAGCGATTACGTTCGGGTTGAAAGCGAAGCGCTGAATCTTGCT
GCCAGAGTCAGGCAAAATGATGACCGTAACGGACGAACGGTATCTGCGGA
TTTTCGGCGGAGCAGGTCATTAGTCACGTTCTCTATACAGCTGAGTCCAC
GGGACGCGGAGATACCTTCGTGGGTGCTGTGCTTCGAGCAGCAAGGCCGG
TGCGTGATGCCCGTCGGCCAGGGTTCCGGGTTGGTATTCTCGGGAAAGAT
GCGTCATGCCTCTCTGGCCACGCACTTCCAGGCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig797:322602..323338+

>mRNA_F-serratus_M_contig797.19269.1 ID=mRNA_F-serratus_M_contig797.19269.1|Name=mRNA_F-serratus_M_contig797.19269.1|organism=Fucus serratus male|type=CDS|length=1464bp|location=Sequence derived from alignment at F-serratus_M_contig797:322602..323338+ (Fucus serratus male)
ATGATGTCTGGAAGGCATCTGCGCAGAGAGAGAGGAGAGAGAAATTCGTC
GGGCAGCAGGTTGGGAAAAGAAGAGACATTGCAACGACGACTACTGCGAG
CGTACGCTTGGGTCCGTTCCTCCGTGGCACTCACGCGCACGCCTGTAACA
GCAACTGCGATGAAGTCTGCTGTGAATCACCTTTCGGTCGTTGGCGTCGG
GCGCTTGATGACTCCTCGGGACTGCGATTTCATCCTTGCCGAGGCGCAAG
GATCGGCGGAATGGTATCCATGGGAGGGTGATCTGGGCGAGGAATGCACG
GCAAAATGTCTCGAGGATCTCCCGGATTCGCGAGCTCTATGGGAAGGAAG
CGCAGGGGAATATGTCCGTGCTCGCATCGCCCGAAATTATGGTGTGCGGC
AAAGCGCGGTCGTCTCTGATACCAGCGACGTCTTTGTGTGCAAAGCTCCG
CTCAGCGATTACGTTCGGGTTGAAAGCGAAGCGCTGAATCTTGCTGCCAG
AGTCAGGCAAAATGATGACCGTAACGGACGAACGGTATCTGCGGATTTTC
GGCGGAGCAGGTCATTAGTCACGTTCTCTATACAGCTGAGTCCACGGGAC
GCGGAGATACCTTCGTGGGTGCTGTGCTTCGAGCAGCAAGGCCGGTGCGT
GATGCCCGTCGGCCAGGGTTCCGGGTTGGTATTCTCGGGAAAGATGCGTC
ATGCCTCTCTGGCCACGCACTTCCAGGCTGCCATGATGTCTGGAAGGCAT
CTGCGCAGAGAGAGAGGAGAGAGAAATTCGTCGGGCAGCAGGTTGGGAAA
AGAAGAGACATTGCAACGACGACTACTGCGAGCGTACGCTTGGGTCCGTT
CCTCCGTGGCACTCACGCGCACGCCTGTAACAGCAACTGCGATGAAGTCT
GCTGTGAATCACCTTTCGGTCGTTGGCGTCGGGCGCTTGATGACTCCTCG
GGACTGCGATTTCATCCTTGCCGAGGCGCAAGGATCGGCGGAATGGTATC
CATGGGAGGGTGATCTGGGCGAGGAATGCACGGCAAAATGTCTCGAGGAT
CTCCCGGATTCGCGAGCTCTATGGGAAGGAAGCGCAGGGGAATATGTCCG
TGCTCGCATCGCCCGAAATTATGGTGTGCGGCAAAGCGCGGTCGTCTCTG
ATACCAGCGACGTCTTTGTGTGCAAAGCTCCGCTCAGCGATTACGTTCGG
GTTGAAAGCGAAGCGCTGAATCTTGCTGCCAGAGTCAGGCAAAATGATGA
CCGTAACGGACGAACGGTATCTGCGGATTTTCGGCGGAGCAGGTCATTAG
TCACGTTCTCTATACAGCTGAGTCCACGGGACGCGGAGATACCTTCGTGG
GTGCTGTGCTTCGAGCAGCAAGGCCGGTGCGTGATGCCCGTCGGCCAGGG
TTCCGGGTTGGTATTCTCGGGAAAGATGCGTCATGCCTCTCTGGCCACGC
ACTTCCAGGCTGCC
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