mRNA_F-serratus_M_contig791.19208.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 4.220e-50 Identity = 103/259 (39.77%), Postives = 154/259 (59.46%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR+ +P H +A + I Y++ T + GIT+ R GL ME + D+++ + RRSVSG +++ G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + +V S Q+A LT+ L+ F
Sbjct: 176 QQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 172 bits (435), Expect = 8.890e-49 Identity = 99/259 (38.22%), Postives = 151/259 (58.30%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q Y + + F V+ +I G+ LS+ D+ EE+ +P+RE +G+L W A TRP+IA A RAVAR+ +P H +A + I Y++ T + GIT+GR GL ME + D+++ + RRSVSG ++ +G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ + H V+HH + + + + YV S Q+A LT+ L+ F
Sbjct: 31 QQTYAQELGMDFGVEYGKEILFPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDF 282
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 179 bits (454), Expect = 9.080e-49 Identity = 103/259 (39.77%), Postives = 154/259 (59.46%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR+ +P H +A + I Y++ T + GIT+ R GL ME + D+++ + RRSVSG +++ G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + +V S Q+A LT+ L+ F
Sbjct: 350 QQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.470e-48 Identity = 102/256 (39.84%), Postives = 151/256 (58.98%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQR-VRVAYVRSEDQYASLLTEPLN 765
Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR+ +P H +A + I Y++ T + GIT+ R GL ME + D+++ + RRSVSG +++ G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ HI V+HH +R ++ + + +V S Q+A LT L
Sbjct: 75 QQTYAEELGMEFGVEYGKEIPLPVGM-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRALT 323
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5KPF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF9_9PHAE) HSP 1 Score: 172 bits (437), Expect = 1.860e-48 Identity = 103/256 (40.23%), Postives = 144/256 (56.25%), Query Frame = 1
Query: 13 YVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQGC-GLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
+ + +A + V T +P +SGV LS D EE FP+RE VG+L W A TRPDIA AVRAVAR+ +P H A M I Y T GI++ R G ++ Y D++F + RRSVSG ++ G +SW SR Q+ T+EA Y+AL +VVK +LFLRQV FM P + + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + V +V S Q A LT+ L F
Sbjct: 92 FTDELAAEYGVAVGTSVPMSSGV-KLSDFDAD------EEATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKRVHWDAAMGILGYAKRTSYMGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAGYVALGDVVKEILFLRQVWRFMLPKVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKRLPKDAF 340
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.060e-48 Identity = 103/259 (39.77%), Postives = 147/259 (56.76%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQGC-GLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q + + +A + V +P +SGV LS D E +FP+RE VG+L W A TRPDIA AVRAVAR+ +P H A M I Y T +GI++ R G ++ Y D++F + RRSVSG ++ GA+SW SR Q+ T+EAEY+AL +VVK +LFLRQ+ FM P + + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + V +V S Q A LT+ L F
Sbjct: 200 QQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDAD------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 451
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE) HSP 1 Score: 181 bits (458), Expect = 2.660e-48 Identity = 102/259 (39.38%), Postives = 155/259 (59.85%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR++ +P H +A + I ++ T + GIT+ R+ GL +E + D+++ + RRSVSG +++ G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + +V S QYA LT+ L+ F
Sbjct: 635 QQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYYASPKEIHWRAGLGILGCVVRTSDLGITFRRRSVAGLSIEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDF 886
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 170 bits (430), Expect = 3.890e-48 Identity = 98/248 (39.52%), Postives = 150/248 (60.48%), Query Frame = 1
Query: 37 FDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR+ +P H +A + I Y++ T + GIT+ R GL ME + D+++ + RRSVSG +++ G +SW SR Q+ T+EAEY++L++V+K VLFLRQV+ F+ P + + V EDN+GAI+LA + ++ + HI V+HH +R + + + +V S Q+A LT+ LN F
Sbjct: 3 FGVEYGKEIPLPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDF 243
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.320e-47 Identity = 103/259 (39.77%), Postives = 154/259 (59.46%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQG-CGLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q Y E + F V+ +IP G+ LS+ D+ EE+ +P+RE +G+L W A TRPDIA AVRAVAR+ +P H +A + I Y++ T + GIT+ R GL ME + D+++ + RRSVSG +++ G ISW SR Q+ T+EAEY++L++V+K VLFLRQV FM P + + VFEDN+GAI+LA + ++ + HI V+HH +R + + + +V S Q+A LT+ L+ F
Sbjct: 871 QQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDF 1122
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.320e-47 Identity = 100/259 (38.61%), Postives = 145/259 (55.98%), Query Frame = 1
Query: 4 QHLYVESMARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRWTAMMTRPDIACAVRAVARFFENPGPAHKKAVMRIFQYLLHTKEWGITYGRQGC-GLCMEAYTDSNFGACLDTRRSVSGAVLVLAKGAISWHSRMQEMTASGTSEAEYIALSEVVKRVLFLRQVQEFMEPLMRVGAVNVFEDNEGAIKLAASKHASRRTNHIGVKHHLVRHASDAQRVRVAYVRSEDQYASLLTEPLNMQKF 777
Q + + +A + V +P +SGV LS D E +FP+RE VG+L W A TRPDIA AVRAVAR+ +P H A M I Y T +GI++ R G ++ Y D++F + RRSVSG ++ GA+SW SR Q+ T+EAEY+AL +VVK +LFLRQ+ F P + + + VFED +G I+LA + ++ + HI V+HH +R + + + V +V S Q A LT+ L+ F
Sbjct: 58 QQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDAD------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFTLPQVGMPCIPVFEDIQGVIQLAQNPISNSNSKHINVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 309 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig791.19208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig791.19208.1 >prot_F-serratus_M_contig791.19208.1 ID=prot_F-serratus_M_contig791.19208.1|Name=mRNA_F-serratus_M_contig791.19208.1|organism=Fucus serratus male|type=polypeptide|length=253bp MARRFDVKKSTKIPATSGVPTLSKADEPRNPEEKEEMRKFPYREAVGALRback to top mRNA from alignment at F-serratus_M_contig791:346855..347637+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig791.19208.1 ID=mRNA_F-serratus_M_contig791.19208.1|Name=mRNA_F-serratus_M_contig791.19208.1|organism=Fucus serratus male|type=mRNA|length=783bp|location=Sequence derived from alignment at F-serratus_M_contig791:346855..347637+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig791:346855..347637+ >mRNA_F-serratus_M_contig791.19208.1 ID=mRNA_F-serratus_M_contig791.19208.1|Name=mRNA_F-serratus_M_contig791.19208.1|organism=Fucus serratus male|type=CDS|length=1518bp|location=Sequence derived from alignment at F-serratus_M_contig791:346855..347637+ (Fucus serratus male)back to top |