mRNA_F-serratus_M_contig791.19200.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig791.19200.1
Unique NamemRNA_F-serratus_M_contig791.19200.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig791.19200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig791contigF-serratus_M_contig791:137729..141151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_001540.1
Exons6
Model size707
Cds size687
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932352.0952039-CDS-F-serratus_M_contig791:137728..1379081622932352.0952039-CDS-F-serratus_M_contig791:137728..137908Fucus serratus maleCDSF-serratus_M_contig791 137729..137908 -
1690964266.570085-CDS-F-serratus_M_contig791:137728..1379081690964266.570085-CDS-F-serratus_M_contig791:137728..137908Fucus serratus maleCDSF-serratus_M_contig791 137729..137908 -
1622932352.1163464-CDS-F-serratus_M_contig791:138374..1385101622932352.1163464-CDS-F-serratus_M_contig791:138374..138510Fucus serratus maleCDSF-serratus_M_contig791 138375..138510 -
1690964266.5820115-CDS-F-serratus_M_contig791:138374..1385101690964266.5820115-CDS-F-serratus_M_contig791:138374..138510Fucus serratus maleCDSF-serratus_M_contig791 138375..138510 -
1622932352.1336508-CDS-F-serratus_M_contig791:138898..1389931622932352.1336508-CDS-F-serratus_M_contig791:138898..138993Fucus serratus maleCDSF-serratus_M_contig791 138899..138993 -
1690964266.592319-CDS-F-serratus_M_contig791:138898..1389931690964266.592319-CDS-F-serratus_M_contig791:138898..138993Fucus serratus maleCDSF-serratus_M_contig791 138899..138993 -
1622932352.1536593-CDS-F-serratus_M_contig791:139453..1395671622932352.1536593-CDS-F-serratus_M_contig791:139453..139567Fucus serratus maleCDSF-serratus_M_contig791 139454..139567 -
1690964266.6034217-CDS-F-serratus_M_contig791:139453..1395671690964266.6034217-CDS-F-serratus_M_contig791:139453..139567Fucus serratus maleCDSF-serratus_M_contig791 139454..139567 -
1622932352.1724012-CDS-F-serratus_M_contig791:140334..1404401622932352.1724012-CDS-F-serratus_M_contig791:140334..140440Fucus serratus maleCDSF-serratus_M_contig791 140335..140440 -
1690964266.6124957-CDS-F-serratus_M_contig791:140334..1404401690964266.6124957-CDS-F-serratus_M_contig791:140334..140440Fucus serratus maleCDSF-serratus_M_contig791 140335..140440 -
1622932352.1910796-CDS-F-serratus_M_contig791:141075..1411311622932352.1910796-CDS-F-serratus_M_contig791:141075..141131Fucus serratus maleCDSF-serratus_M_contig791 141076..141131 -
1690964266.621744-CDS-F-serratus_M_contig791:141075..1411311690964266.621744-CDS-F-serratus_M_contig791:141075..141131Fucus serratus maleCDSF-serratus_M_contig791 141076..141131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932352.2062175-UTR-F-serratus_M_contig791:141131..1411511622932352.2062175-UTR-F-serratus_M_contig791:141131..141151Fucus serratus maleUTRF-serratus_M_contig791 141132..141151 -
1690964266.630642-UTR-F-serratus_M_contig791:141131..1411511690964266.630642-UTR-F-serratus_M_contig791:141131..141151Fucus serratus maleUTRF-serratus_M_contig791 141132..141151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig791.19200.1prot_F-serratus_M_contig791.19200.1Fucus serratus malepolypeptideF-serratus_M_contig791 137729..141131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig791.19200.1

>prot_F-serratus_M_contig791.19200.1 ID=prot_F-serratus_M_contig791.19200.1|Name=mRNA_F-serratus_M_contig791.19200.1|organism=Fucus serratus male|type=polypeptide|length=229bp
MGDAGVARDCFSYNTAMHGYGRNGDWEKAIALLQDMRDNDVRPDIVSYST
VLAACGKAGEWQRGKTILEEMRADGIAPNVFSFGSLINACGKAGRWELAV
ETLDEMRASGLVPNEHNWSTAIDACGKAGEWQEALELLGQLEEAAATAGG
AGGQVLRLSTTMYNFVLEACARAGKWDRGAEILERMKGSTCAPPDARTYA
KVIEACAKGEKWEQAIRYLDEMREAGIS*
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mRNA from alignment at F-serratus_M_contig791:137729..141151-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig791.19200.1 ID=mRNA_F-serratus_M_contig791.19200.1|Name=mRNA_F-serratus_M_contig791.19200.1|organism=Fucus serratus male|type=mRNA|length=3423bp|location=Sequence derived from alignment at F-serratus_M_contig791:137729..141151- (Fucus serratus male)
CGTTGGAGTTGTTGAACCAGATGGGCGATGCCGGCGTGGCGCGAGACTGC
TTCAGTTACAACACCGCCATGCACGGGTGAGCACTATTACATCATTACAC
CATTACACCATTAATAGAGGAATAGAGGAAGGCAAAAAGGAAGCTGATTC
TTACTATTACTATTACTTTTGGATATTACTGAGGAAGGGAAAAAGGAAGC
TGATTGTTGCTATTACTATTACTTTTGAATATTACTATTACTATTAATGT
TGCCCCCCGACCGCATTTTCCATCAAGCGCGATCCACACCACTGTGTTTA
CGTGATATACTGTACTATGTACATCATTTTTAGTTGTATGCTGTATGCTG
TATGTCGGTCCCGTGGCCTATCTGGTGTCGCTGCGTGGAGCGATTGGCAT
TGCGCTGCCTGTAATACTAACACATACTAACACACACTAGCAACGTAATA
ATGTAACAGCGTTATAAGTAATAACGCCCCTTGGCTGTTCCCCGCCTGCT
TTGAAACCAGCGATAGGTGCGATAGGTGCGATGACCGTTTGGAAATAGTT
TTTTAGAGTTTTGAAAATACGTGACGTTTAGCATCGACAATCCTTGACGA
TGTAATGCGATGCCCTTCAGGTGCCGCCACGTATTGAACTATTAGTATTG
AATAGTGACTGTTAACTATTGATAATGACTTATGATCATAATTATGATGG
CTTTCACCAAGATATGGCAGGAACGGAGACTGGGAAAAAGCCATCGCCCT
GCTGCAGGACATGCGGGACAACGATGTGCGCCCGGATATCGTTAGCTACA
GCACGGTGCTTGCTGCGGTGAGTCTAGCTCTTAAGCGCGTGGATGAAGTC
TGGCATGTGCGCCGCGAGGGATCTCTGTATCGCATTACATTACATTACCC
TACTGTACGTCCAGTGCATACTGCATGCGCCGGCGGAGTTGTCTCAGATT
TTCAACAGATATCGAGCGTGAGGGTTCAGGGTACTATTCAAATAAAATGG
AACACCTCGCTTGCTGTTTACTCATTAGACGTTGGTGGTGTGTAGATATG
TACTATAAATAGTGTTCTGGTATTGTGACATAGGACACATAGAACACCAA
GCCGATTTGCGCTCTTACCACAGCATAGCTATCTATGCCTCATGAATGTT
ACCTGTTACAGTACATTAAATATCACCAAAAGCACCAAAATCACCAAACG
AGAAACACGTATCACGTCATCACGTTATCAAGCAAGCCGGCGCCACGACC
CTCGACGACAACAGCAGCTAAAGAGCTAAACAACTAGGCTCTAAGCTAAC
TTAACAACCCATGTAAGTACTTAATTTCTGTACCCACCCTGCTATTACCG
GTATTAGAAGACAAGTCACCAAGATATCATCAGTAACTTTTCAGCGACTA
TTACTAATAACAGTCAAATGGCTTTCGACTCGTCCATTTGTTTAACTACT
GCCCCGTGGTGTTGCTGTGTACCGTCCTGCCCTGACCGTACTGTACTGTA
TCCACTTTTGATATTGATACTTATGGTCTCTTTTAACTGTTAATGTTAAT
GTTAATGCTAATGTTAATGTTAATGCTAATGCAGTGCGGCAAGGCGGGTG
AGTGGCAGCGTGGTAAGACCATCTTGGAGGAGATGAGGGCTGACGGAATT
GCGCCCAACGTCTTCAGCTTCGGGTCGCTCATTAATGCCTGTGGAAAGGT
ATGATAGGGTGGGGTGGGACACATGGGCAGATATCATATTCTATGTTCGG
GATCGTGTTGGAGGATACTCAACACCTCTGTTAACTGTTAAATGTTAACA
GTCTAAGGTTAGTCCGACATTAATGATACATTACCTTCACCCTTTCACTA
CTGATTTTGACATTAACATTACAGTACCTTTTTGCGTTGTTTTGTTTTGT
TTTCGTGCTGCAGGGTTGTGTTGTCGTTGTTGTCGTTGTTGTCGTTGTTG
TCGTTGTAGTGGTTCGGCAGTATTGTTAATAATGATGGCGTGGGGAGATG
TGGTGTTCATTGAGGCGATACACACAATCCAGGATCGTTCGTCCCGCTCA
GAGCGCGCCGTCTTGCATTATCCGATCCTCCAATCGAAGACGCGCACGAT
CGAACGATAACCAACCTCCTTGTGCCGTGGCGGCTGCTGCTGTATACTGC
GACGAAAGGCGGGACGCTGGGAGCTGGCTGTTGAGACTCTCGATGAGATG
CGGGCGTCGGGGCTGGTGCCGAACGAGCATAACTGGAGCACCGCAATCGA
CGCGTGAGCACAACCTCGCATGCACAATCTTGTTCTAATGATCGTCAAAC
GACTTGCTATTAATAACACCATAGACTAACACCATACCGTTGAGAGCTCT
AATGTTACCAGCGCAGTGTATTATTCTCTCGACGCGCATCACCCATCACC
CGACATTAGAGCAATATGGAACGATACGGTAATACACCTTTAAAATCTGC
TCCCGCGTCAACAAAGGAACTATATCTGGTATCTGGTTGTGTAGTCTACT
CCCTCCCGGGTCTGAGTTACTGGTAGATGGTAGATGATATCGTGGCGGTA
ACAAGGGTGGTCAGTACTGTACCTCCTTTACTGTTTACTATTTACTATTT
TCTCTCTCTCACGGGGTGTGGGTGGGGCTGTGTAAACGAAGGTGCGGCAA
AGCCGGCGAGTGGCAGGAGGCGCTCGAGCTTCTTGGGCAGCTGGAAGAGG
CGGCGGCGACGGCGGGAGGCGCAGGAGGACAGGTTTTGCGGCTTTCCACC
ACTATGTACAACTTCGTCCTCGAAGCGGTGAGAATTTCCGCCGCGTTTCT
TCCTTACTGTTCACACCATACTTCGAGAGGAACCTGACGGATACGCTACT
GTCCACGCCATGCGCGGCAAAGCATTCTTGGCAGGGCTGTATGTGGAAAC
GTGTTCAGGCACGAGAGTATTTGCAGAGTATCTACTTATACTCTACAACA
GTACCCGTGGGGTCTCGCGAGCTCGTTACACTCGTTACACTCAGCTCACG
CCCCGCGCGCTCGGCCGCTTGTCTTCGTCTTCGTCGTCACCTTCATCTTC
ATCTTCATCTTCATCCTCACGTCGACCACCGCCCACGTTTTGTCAAGATT
TTGCTACACTCTTGTACGACTATCGTGTTTGACTGTCCTGCACAAAACTT
GGCTTTATTATGCTATTATATGCTATGCTATTGTATGCTATGCTTTACCA
TATGCTATTGTATGCCGTCTCTTGGTGGGGGGGGGGTGAGCAGTGTGCCA
GAGCCGGAAAGTGGGATCGAGGGGCAGAAATATTGGAGAGGATGAAAGGC
AGCACATGCGCGCCTCCGGACGCGAGGACATACGCTAAGGTCATTGAAGC
TTGCGCCAAGGGGGAGAAATGGGAGCAGGCGATACGGTACCTGGACGAGA
TGCGGGAGGCTGGGATTTCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig791:137729..141151-

>mRNA_F-serratus_M_contig791.19200.1 ID=mRNA_F-serratus_M_contig791.19200.1|Name=mRNA_F-serratus_M_contig791.19200.1|organism=Fucus serratus male|type=CDS|length=1374bp|location=Sequence derived from alignment at F-serratus_M_contig791:137729..141151- (Fucus serratus male)
ATGGGCGATGCCGGCGTGGCGCGAGACTGCTTCAGTTACAACACCGCCAT
GCACGGATGGGCGATGCCGGCGTGGCGCGAGACTGCTTCAGTTACAACAC
CGCCATGCACGGATATGGCAGGAACGGAGACTGGGAAAAAGCCATCGCCC
TGCTGCAGGACATGCGGGACAACGATGTGCGCCCGGATATCGTTAGCTAC
AGCACGGTGCTTGCTGCGATATGGCAGGAACGGAGACTGGGAAAAAGCCA
TCGCCCTGCTGCAGGACATGCGGGACAACGATGTGCGCCCGGATATCGTT
AGCTACAGCACGGTGCTTGCTGCGTGCGGCAAGGCGGGTGAGTGGCAGCG
TGGTAAGACCATCTTGGAGGAGATGAGGGCTGACGGAATTGCGCCCAACG
TCTTCAGCTTCGGGTCGCTCATTAATGCCTGTGGAAAGTGCGGCAAGGCG
GGTGAGTGGCAGCGTGGTAAGACCATCTTGGAGGAGATGAGGGCTGACGG
AATTGCGCCCAACGTCTTCAGCTTCGGGTCGCTCATTAATGCCTGTGGAA
AGGCGGGACGCTGGGAGCTGGCTGTTGAGACTCTCGATGAGATGCGGGCG
TCGGGGCTGGTGCCGAACGAGCATAACTGGAGCACCGCAATCGACGCGCG
GGACGCTGGGAGCTGGCTGTTGAGACTCTCGATGAGATGCGGGCGTCGGG
GCTGGTGCCGAACGAGCATAACTGGAGCACCGCAATCGACGCGTGCGGCA
AAGCCGGCGAGTGGCAGGAGGCGCTCGAGCTTCTTGGGCAGCTGGAAGAG
GCGGCGGCGACGGCGGGAGGCGCAGGAGGACAGGTTTTGCGGCTTTCCAC
CACTATGTACAACTTCGTCCTCGAAGCGGTGCGGCAAAGCCGGCGAGTGG
CAGGAGGCGCTCGAGCTTCTTGGGCAGCTGGAAGAGGCGGCGGCGACGGC
GGGAGGCGCAGGAGGACAGGTTTTGCGGCTTTCCACCACTATGTACAACT
TCGTCCTCGAAGCGTGTGCCAGAGCCGGAAAGTGGGATCGAGGGGCAGAA
ATATTGGAGAGGATGAAAGGCAGCACATGCGCGCCTCCGGACGCGAGGAC
ATACGCTAAGGTCATTGAAGCTTGCGCCAAGGGGGAGAAATGGGAGCAGG
CGATACGGTACCTGGACGAGATGCGGGAGGCTGGGATTTCGTGATGTGCC
AGAGCCGGAAAGTGGGATCGAGGGGCAGAAATATTGGAGAGGATGAAAGG
CAGCACATGCGCGCCTCCGGACGCGAGGACATACGCTAAGGTCATTGAAG
CTTGCGCCAAGGGGGAGAAATGGGAGCAGGCGATACGGTACCTGGACGAG
ATGCGGGAGGCTGGGATTTCGTGA
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