mRNA_F-serratus_M_contig7867.19132.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7867.19132.1
Unique NamemRNA_F-serratus_M_contig7867.19132.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 6.540e-59
Identity = 105/190 (55.26%), Postives = 117/190 (61.58%), Query Frame = 1
Query:    1 KVARRIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM----------------------------------------------------RG--------EEYEFDCTIDAEWYKDWYIDQLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            K A RIKPSLS+AQK+ R+DFI D+VDE  G+YLDQGNVVHLDESWF+LM+EKEK+R+F  E+VPG PRV H+SHLPKIM                                                     G        EEYEFDCTIDAEWYKDWYID LLPAIK+KMPW RSKRVVVQQDGASPH
Sbjct:  116 KKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPH 305          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI00188F83A1 (uncharacterized protein LOC119300137 n=2 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188F83A1)

HSP 1 Score: 58.5 bits (140), Expect = 1.980e-7
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   13 RIKPSLSEAQKKRRIDFICDQVDETT-GD----YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
            R+KP L+E  K+ R+DF    +DE T GD    +    N+VH+DE WF + K K    + PDEE P  P    K+ + K+M
Sbjct:  159 RVKPVLTEKNKRDRVDFCLSMIDEATLGDVSPSFRSMHNIVHIDEKWFSMTKRKRNYYLLPDEEDPERPV---KNSIGKVM 236          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D51CFF (uncharacterized protein LOC120671035 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51CFF)

HSP 1 Score: 57.4 bits (137), Expect = 4.500e-7
Identity = 31/97 (31.96%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRV-QHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
            +KP L+EA KK R+ +  D +D++  D   + D  ++V +DE WF+L ++ E+  + PDE+ P   R+ ++K+++P+IM      F C +    ++D
Sbjct:   33 VKPYLTEANKKTRLKWCIDMIDQSLLDDPKFKDLFDIVFIDEKWFYLYQKSERYYLLPDEDEPH--RICKNKNYIPRIM------FLCVVARPRFRD 121          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 57.0 bits (136), Expect = 6.410e-7
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
            +KP+L+E  K+ R++F   Q+D  T  + D  NVVH+DE WF++ K   K  +  DE  P + RV+ K  + K M
Sbjct:   69 VKPTLTEDNKRTRLEFCLSQIDPDTLLFSDMFNVVHIDEKWFYMCKTTTKYYLVHDEPEP-TRRVKSKRFITKAM 142          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D69F99 (uncharacterized protein LOC120703634 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D69F99)

HSP 1 Score: 56.6 bits (135), Expect = 9.320e-7
Identity = 30/97 (30.93%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRV-QHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
            +KP L+EA KK R+ +  D +D++  D   + D  ++V +DE WF++ ++ E+  + PDE+ P   R+ ++K+++P+IM      F C +    ++D
Sbjct:  158 VKPYLTEANKKTRLKWCIDMIDQSLLDDPKFKDLFDIVFIDEKWFYIYQKSERYYLLPDEDEPH--RICKNKNYIPRIM------FLCVVARPRFRD 246          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A485K2S3_9STRA (Aste57867_497 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2S3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.530e-6
Identity = 48/150 (32.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query:   13 RIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM------------------------RGEEYEFDCTIDAEWYKDWYIDQLLPAIKKKMPWQRSKRVVVQQDGASPH 390
            RIKP L++A K  RI F C            + +V   DE WF   K   K+ +   EE P     + K  +PK M                         G        +DA  Y+D+ I+Q++PAIK+K P   SKRVV+Q D A+PH
Sbjct:   30 RIKPLLTDANKATRIAF-C------------RSHVRPSDEKWFNADKNVRKVYLTEGEE-PIQRAWKSKRFIPKAMFLAAVARPRHVADQPAVRTSRNRPAGTMVATLVNVDATVYRDYVINQVIPAIKEKFP-TASKRVVLQHDNATPH 164          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: UPI0019D57972 (uncharacterized protein LOC120699683 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D57972)

HSP 1 Score: 54.7 bits (130), Expect = 4.450e-6
Identity = 31/96 (32.29%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGDYL---DQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIMRGEEYEFDCTIDAEWYKD 294
            IKP L++A KK R+ +  D +D+   D L   D  + V +DE WF+L ++ E+  + PDE+ P     ++K+++P+IM      F C +    ++D
Sbjct:  206 IKPYLTDANKKTRLQWCIDMIDQGLLDDLKFKDLFDFVFIDEKWFYLHQKSERYYLLPDEDEPHRT-CKNKNYIPRIM------FLCVVARPRFRD 294          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-5
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
            +KP L++A  K R++F    +    GD   + D  ++VH+DE WF+L K K    ++ D+EV     VQ KSH+ K+M
Sbjct:  154 LKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFYLTKNKSVYYIY-DDEVLAIRSVQSKSHITKVM 230          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: W4FND3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FND3_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.840e-5
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGD---YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPK 234
            +KP L++A  K R++F    +    GD   + D  ++VH+DE WF+L K K    ++ D+EV     VQ KSH+ K
Sbjct:   13 LKPRLTDANIKLRLEFAMSFLRSGPGDRRVFSDMHDIVHVDEKWFYLTKNKNVYYIY-DDEVLAIRSVQSKSHITK 87          
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Match: A0A1U8HCR4_CAPAN (uncharacterized protein LOC107876564 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HCR4_CAPAN)

HSP 1 Score: 52.0 bits (123), Expect = 3.620e-5
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   16 IKPSLSEAQKKRRIDFICDQVDETTGD----YLDQGNVVHLDESWFFLMKEKEKIRMFPDEEVPGSPRVQHKSHLPKIM 240
            IKP LSEA K+ R+ F    VD  +      +LD  N VH+DE WF++ ++ ++  + P++E P     + K+++ K+M
Sbjct:   63 IKPLLSEANKRTRLQFCLSMVDPESIPHDLFFLDMYNTVHIDEKWFYMTRKCQRYYLLPEKEDPVRT-CKSKNYIEKVM 140          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7867.19132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE6.540e-5955.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00188F83A11.980e-739.51uncharacterized protein LOC119300137 n=2 Tax=Triti... [more]
UPI0019D51CFF4.500e-731.96uncharacterized protein LOC120671035 n=1 Tax=Panic... [more]
UPI0007F012D16.410e-738.67uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
UPI0019D69F999.320e-730.93uncharacterized protein LOC120703634 n=1 Tax=Panic... [more]
A0A485K2S3_9STRA2.530e-632.00Aste57867_497 protein n=1 Tax=Aphanomyces stellatu... [more]
UPI0019D579724.450e-632.29uncharacterized protein LOC120699683 isoform X1 n=... [more]
A0A6A4ZEB5_9STRA1.110e-537.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FND3_9STRA2.840e-536.84Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1U8HCR4_CAPAN3.620e-534.18uncharacterized protein LOC107876564 n=1 Tax=Capsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7867contigF-serratus_M_contig7867:3768..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog157072.XP_008870376.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D1IG@1,2SI8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932340.0200047-CDS-F-serratus_M_contig7867:3767..40071622932340.0200047-CDS-F-serratus_M_contig7867:3767..4007Fucus serratus maleCDSF-serratus_M_contig7867 3768..4007 +
1690964261.0803277-CDS-F-serratus_M_contig7867:3767..40071690964261.0803277-CDS-F-serratus_M_contig7867:3767..4007Fucus serratus maleCDSF-serratus_M_contig7867 3768..4007 +
1622932340.0452724-CDS-F-serratus_M_contig7867:4118..42681622932340.0452724-CDS-F-serratus_M_contig7867:4118..4268Fucus serratus maleCDSF-serratus_M_contig7867 4119..4268 +
1690964261.0906796-CDS-F-serratus_M_contig7867:4118..42681690964261.0906796-CDS-F-serratus_M_contig7867:4118..4268Fucus serratus maleCDSF-serratus_M_contig7867 4119..4268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7867.19132.1prot_F-serratus_M_contig7867.19132.1Fucus serratus malepolypeptideF-serratus_M_contig7867 3768..4268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7867.19132.1

>prot_F-serratus_M_contig7867.19132.1 ID=prot_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=polypeptide|length=130bp
KVARRIKPSLSEAQKKRRIDFICDQVDETTGDYLDQGNVVHLDESWFFLM
KEKEKIRMFPDEEVPGSPRVQHKSHLPKIMRGEEYEFDCTIDAEWYKDWY
IDQLLPAIKKKMPWQRSKRVVVQQDGASPH
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mRNA from alignment at F-serratus_M_contig7867:3768..4268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7867.19132.1 ID=mRNA_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig7867:3768..4268+ (Fucus serratus male)
AAGGTGGCTCGCCGCATCAAGCCTTCCCTTTCCGAGGCCCAGAAGAAGCG CCGAATCGACTTCATCTGCGATCAGGTGGACGAGACGACCGGGGACTACC TCGACCAGGGAAACGTCGTTCACCTGGACGAAAGTTGGTTTTTCCTCATG AAGGAGAAAGAGAAAATTCGAATGTTCCCAGACGAGGAGGTCCCCGGGTC TCCCCGCGTTCAACACAAGAGCCACCTTCCAAAGATCATGGTCATTGTGG CAAACGCTCGGCCGGACCCGAGCCACAACTTCGACGGCAAGATCGGCATC TGGCGCATTTGTGTCATGAAAACCGCCCAGCGATCGTCCAAGAGGAGGAA GAGGGGCGAAGAGTACGAGTTCGACTGCACCATCGACGCGGAGTGGTACA AGGACTGGTACATCGACCAACTTCTACCCGCGATCAAGAAAAAGATGCCG TGGCAACGTTCAAAGCGCGTTGTAGTGCAGCAGGACGGCGCGAGCCCCCA C
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Coding sequence (CDS) from alignment at F-serratus_M_contig7867:3768..4268+

>mRNA_F-serratus_M_contig7867.19132.1 ID=mRNA_F-serratus_M_contig7867.19132.1|Name=mRNA_F-serratus_M_contig7867.19132.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig7867:3768..4268+ (Fucus serratus male)
AAGGTGGCTCGCCGCATCAAGCCTTCCCTTTCCGAGGCCCAGAAGAAGCG
CCGAATCGACTTCATCTGCGATCAGGTGGACGAGACGACCGGGGACTACC
TCGACCAGGGAAACGTCGTTCACCTGGACGAAAGTTGGTTTTTCCTCATG
AAGGAGAAAGAGAAAATTCGAATGTTCCCAGACGAGGAGGTCCCCGGGTC
TCCCCGCGTTCAACACAAGAGCCACCTTCCAAAGATCATGAAGGTGGCTC
GCCGCATCAAGCCTTCCCTTTCCGAGGCCCAGAAGAAGCGCCGAATCGAC
TTCATCTGCGATCAGGTGGACGAGACGACCGGGGACTACCTCGACCAGGG
AAACGTCGTTCACCTGGACGAAAGTTGGTTTTTCCTCATGAAGGAGAAAG
AGAAAATTCGAATGTTCCCAGACGAGGAGGTCCCCGGGTCTCCCCGCGTT
CAACACAAGAGCCACCTTCCAAAGATCATGAGGGGCGAAGAGTACGAGTT
CGACTGCACCATCGACGCGGAGTGGTACAAGGACTGGTACATCGACCAAC
TTCTACCCGCGATCAAGAAAAAGATGCCGTGGCAACGTTCAAAGCGCGTT
GTAGTGCAGCAGGACGGCGCGAGCCCCCACAGGGGCGAAGAGTACGAGTT
CGACTGCACCATCGACGCGGAGTGGTACAAGGACTGGTACATCGACCAAC
TTCTACCCGCGATCAAGAAAAAGATGCCGTGGCAACGTTCAAAGCGCGTT
GTAGTGCAGCAGGACGGCGCGAGCCCCCAC
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