mRNA_F-serratus_M_contig7807.19065.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7807.19065.1
Unique NamemRNA_F-serratus_M_contig7807.19065.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7807.19065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7807contigF-serratus_M_contig7807:10933..11442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7807.19065.1prot_F-serratus_M_contig7807.19065.1Fucus serratus malepolypeptideF-serratus_M_contig7807 11054..11413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.4475436-UTR-F-serratus_M_contig7807:10932..110531622932326.4475436-UTR-F-serratus_M_contig7807:10932..11053Fucus serratus maleUTRF-serratus_M_contig7807 10933..11053 +
1690964254.5107958-UTR-F-serratus_M_contig7807:10932..110531690964254.5107958-UTR-F-serratus_M_contig7807:10932..11053Fucus serratus maleUTRF-serratus_M_contig7807 10933..11053 +
1622932326.5013802-UTR-F-serratus_M_contig7807:11413..114421622932326.5013802-UTR-F-serratus_M_contig7807:11413..11442Fucus serratus maleUTRF-serratus_M_contig7807 11414..11442 +
1690964254.537046-UTR-F-serratus_M_contig7807:11413..114421690964254.537046-UTR-F-serratus_M_contig7807:11413..11442Fucus serratus maleUTRF-serratus_M_contig7807 11414..11442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932326.475083-CDS-F-serratus_M_contig7807:11053..114131622932326.475083-CDS-F-serratus_M_contig7807:11053..11413Fucus serratus maleCDSF-serratus_M_contig7807 11054..11413 +
1690964254.5260112-CDS-F-serratus_M_contig7807:11053..114131690964254.5260112-CDS-F-serratus_M_contig7807:11053..11413Fucus serratus maleCDSF-serratus_M_contig7807 11054..11413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7807.19065.1

>prot_F-serratus_M_contig7807.19065.1 ID=prot_F-serratus_M_contig7807.19065.1|Name=mRNA_F-serratus_M_contig7807.19065.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MAKRTQARSAGKVYMPPGHKLSCDSRCGPDMYSPDIIGSYIFFRTPSDRW
QFAKVVGLAEDAEGVMFPHTIKMLDWEKRFSVHLRREQLKTPDVSDDPGT
WCWHLHPRGSCKHYTYSLS*
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mRNA from alignment at F-serratus_M_contig7807:10933..11442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7807.19065.1 ID=mRNA_F-serratus_M_contig7807.19065.1|Name=mRNA_F-serratus_M_contig7807.19065.1|organism=Fucus serratus male|type=mRNA|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig7807:10933..11442+ (Fucus serratus male)
ACCGGAAAAGACTTCCTGGGAAACAGGGAAAGACCTACGGCAATGTGGTG
GAGCGCTACTGGGCGGGTGAGCCGAAGCAAGTCGGCGGGGAAACGCAAAA
TACCGAGCGTATCGTGTGCAGATGGCAAAACGAACGCAAGCGCGGTCAGC
CGGCAAGGTATATATGCCGCCAGGGCACAAGCTCAGCTGCGACTCTAGGT
GTGGACCCGACATGTACTCACCTGACATCATTGGCTCGTATATTTTCTTC
AGGACACCGAGCGACAGGTGGCAATTTGCGAAGGTGGTCGGCTTAGCGGA
GGACGCGGAGGGCGTAATGTTTCCCCACACCATCAAGATGCTCGACTGGG
AGAAGCGTTTTAGTGTGCATCTTCGACGCGAACAACTCAAGACGCCGGAC
GTTAGCGATGACCCTGGAACGTGGTGCTGGCATCTACATCCTCGCGGAAG
TTGCAAGCATTACACATATTCGCTGTCTTGACATTAACGTCGACGATTAT
GGGCTCGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7807:10933..11442+

>mRNA_F-serratus_M_contig7807.19065.1 ID=mRNA_F-serratus_M_contig7807.19065.1|Name=mRNA_F-serratus_M_contig7807.19065.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig7807:10933..11442+ (Fucus serratus male)
ATGGCAAAACGAACGCAAGCGCGGTCAGCCGGCAAGGTATATATGCCGCC
AGGGCACAAGCTCAGCTGCGACTCTAGGTGTGGACCCGACATGTACTCAC
CTGACATCATTGGCTCGTATATTTTCTTCAGGACACCGAGCGACAGGTGG
CAATTTGCGAAGGTGGTCGGCTTAGCGGAGGACGCGGAGGGCGTAATGTT
TCCCCACACCATCAAGATGCTCGACTGGGAGAAGCGTTTTAGTGTGCATC
TTCGACGCGAACAACTCAAGACGCCGGACGTTAGCGATGACCCTGGAACG
TGGTGCTGGCATCTACATCCTCGCGGAAGTTGCAAGCATTACACATATTC
GCTGTCTTGAATGGCAAAACGAACGCAAGCGCGGTCAGCCGGCAAGGTAT
ATATGCCGCCAGGGCACAAGCTCAGCTGCGACTCTAGGTGTGGACCCGAC
ATGTACTCACCTGACATCATTGGCTCGTATATTTTCTTCAGGACACCGAG
CGACAGGTGGCAATTTGCGAAGGTGGTCGGCTTAGCGGAGGACGCGGAGG
GCGTAATGTTTCCCCACACCATCAAGATGCTCGACTGGGAGAAGCGTTTT
AGTGTGCATCTTCGACGCGAACAACTCAAGACGCCGGACGTTAGCGATGA
CCCTGGAACGTGGTGCTGGCATCTACATCCTCGCGGAAGTTGCAAGCATT
ACACATATTCGCTGTCTTGA
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