mRNA_F-serratus_M_contig780.19058.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig780.19058.1
Unique NamemRNA_F-serratus_M_contig780.19058.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.480e-26
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   25 CGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDPYRTIMSSF---C-------SDPDTPRINWFSN 279
            CG+  +F+G++  GFS V   C D  SHTHEI HN+GCYH+RDNS T+ +Y HGYRYC G+DPYRTIMS +   C       +DP  P++N+FSN
Sbjct:  458 CGLGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSN 552          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.510e-25
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   25 CGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDPYRTIMSSF---CS-------DPDTPRINWFSN 279
            CG+  +F+G +  GFS V+  C D  SHTHEI HN+GCYH+++NS+T+  Y HG+RYC+G DPYRTIMS +   C        DP  PR+N+FSN
Sbjct:  278 CGLGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSN 372          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.220e-17
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   25 CGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDP 213
            CG+  +F+G++  GFS V   C D  SHTHEI HN+GCYH+R NS  +  + HGYRYC GTDP
Sbjct:  117 CGLGYVFNGNAEYGFSLVGSNCFDNFSHTHEIAHNMGCYHDRLNSGPQDAFRHGYRYCTGTDP 179          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: D8LCC0_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.270e-16
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   64 GFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFS 276
            G+S V+  C+D LSH HEIGHN+G  HNR+++++E DYAH  RYC G  PYRTIM+        PR+  FS
Sbjct:  315 GYSIVHTHCLDNLSHIHEIGHNMGANHNREDTSSEHDYAHAQRYCTGDTPYRTIMAYETGCLQAPRVAMFS 385          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A7S2PP87_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PP87_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.640e-14
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   52 SSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFSN 279
            S  + FS  N   I   +  HE+GHN GCYHNR NSNT+ +YAHGY+  D T  +RTI++  C++   PR+NW+S+
Sbjct:   56 SKANMFSITNWGYIPGHTFAHELGHNWGCYHNRANSNTQVNYAHGYQSPDET--FRTILAYNCANSYCPRVNWYSS 129          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A7S2LJR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LJR7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   52 SSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFSN 279
            S  + FS  N   I   +  HE+GHN GCYHNR NSNT+ +YAHGY+  D T  +RTI++  C++   PR+NW+S+
Sbjct:  296 SKANMFSITNWGYIPGHTFAHELGHNWGCYHNRANSNTQVNYAHGYQSPDET--FRTILAYNCANSYCPRVNWYSS 369          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.980e-11
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   13 VGFSCGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDN---SNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFSN 279
            VGF+ G  +  SG +  G+S V+  C+   SH HE+GHN G  HN++N   S+    Y + YR C+    +RTIM+     P TPR+N FSN
Sbjct:  323 VGFTMGSPS--SGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCEVGTKFRTIMAYSSGCPSTPRVNVFSN 412          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A835YK21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK21_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.360e-11
Identity = 45/95 (47.37%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   25 CGIANLFSGSSVD----GFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTET--DYAHGYRYC-DGTD--PY-RTIMSSFCSDPDTPRINWFSN 279
            CG  NL S +S      G+S V   CI   SH HEIGHN+GC HN +NS   T   Y  GYRYC DG    PY RTIMS  C+     R+ +FS+
Sbjct:  429 CGYGNLLSSASSSFASYGYSVVYSDCIASYSHIHEIGHNMGCQHNVENSGQTTVWPYGDGYRYCNDGVTQAPYFRTIMSYACTG--ATRVPYFSS 521          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 8.230e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   46 SGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDN---SNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFSN 279
            SG +  G+S V+  C+   SH HE+GHN G  HN++N   S     Y + YR CD    +RTIM+     P TPR+N FSN
Sbjct:  324 SGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVNVFSN 404          
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-10
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   25 CGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNRDNSNTE-TDYAHGYRYCDG 204
            CG   +F+ +   GFS ++ +C    + THEIGHNLGC H+RDNSNT  T Y HG RYC G
Sbjct:  324 CGRGWIFNFNEALGFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYCTG 384          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig780.19058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE2.480e-2653.68LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE5.510e-2551.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP2_ECTSI4.220e-1755.56Peptidyl-Asp metallopeptidase. metallo peptidase. ... [more]
D8LCC0_ECTSI8.270e-1652.11Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A7S2PP87_9STRA3.640e-1447.37Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2LJR7_9STRA2.880e-1347.37Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
D8LC56_ECTSI5.980e-1141.30Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A835YK21_9STRA6.360e-1147.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JDN0_9PHAE8.230e-1143.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLU0_ECTSI1.990e-1052.46PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig780contigF-serratus_M_contig780:4674..5659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4e-09
Seed eggNOG ortholog2880.D8LC56
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size280
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig780.19058.1prot_F-serratus_M_contig780.19058.1Fucus serratus malepolypeptideF-serratus_M_contig780 4674..5659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932325.398336-CDS-F-serratus_M_contig780:4673..48181622932325.398336-CDS-F-serratus_M_contig780:4673..4818Fucus serratus maleCDSF-serratus_M_contig780 4674..4818 -
1690964254.0953114-CDS-F-serratus_M_contig780:4673..48181690964254.0953114-CDS-F-serratus_M_contig780:4673..4818Fucus serratus maleCDSF-serratus_M_contig780 4674..4818 -
1622932325.4274483-CDS-F-serratus_M_contig780:5009..51081622932325.4274483-CDS-F-serratus_M_contig780:5009..5108Fucus serratus maleCDSF-serratus_M_contig780 5010..5108 -
1690964254.1049638-CDS-F-serratus_M_contig780:5009..51081690964254.1049638-CDS-F-serratus_M_contig780:5009..5108Fucus serratus maleCDSF-serratus_M_contig780 5010..5108 -
1622932325.451587-CDS-F-serratus_M_contig780:5624..56591622932325.451587-CDS-F-serratus_M_contig780:5624..5659Fucus serratus maleCDSF-serratus_M_contig780 5625..5659 -
1690964254.1153572-CDS-F-serratus_M_contig780:5624..56591690964254.1153572-CDS-F-serratus_M_contig780:5624..5659Fucus serratus maleCDSF-serratus_M_contig780 5625..5659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig780.19058.1

>prot_F-serratus_M_contig780.19058.1 ID=prot_F-serratus_M_contig780.19058.1|Name=mRNA_F-serratus_M_contig780.19058.1|organism=Fucus serratus male|type=polypeptide|length=93bp
MAGNVGFSCGIANLFSGSSVDGFSAVNPLCIDFLSHTHEIGHNLGCYHNR
DNSNTETDYAHGYRYCDGTDPYRTIMSSFCSDPDTPRINWFSN
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mRNA from alignment at F-serratus_M_contig780:4674..5659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig780.19058.1 ID=mRNA_F-serratus_M_contig780.19058.1|Name=mRNA_F-serratus_M_contig780.19058.1|organism=Fucus serratus male|type=mRNA|length=986bp|location=Sequence derived from alignment at F-serratus_M_contig780:4674..5659- (Fucus serratus male)
ATGGCCGGGAACGTTGGGTTTTCCTGCGGGATCGCGTGAGTAATGGCCTC CTGGCATCATGCTACACATACATATGCTACCTATACGCTTCTCTGCTGTC TCTGGTAAAATTAATCGCGCCGATATCTAGCGGACAAGCAGCTTCCTGTT TTTCTCTGTGTAGAGGACTGCCATGCATCATGCATCACTACTGCAAAGCA ATGCGATTGTTCGTTGGTCAAGCGCCAAATGAAACAGCAGGCTGTGTCCT GCGGTTGGGTTGCACCACCCGAACATATCATGGGACCTTGCACACGTTAT AATACCGACTCGCTATAAATGTATGACGTACTATGCGTAGCGAATGTCCG GTTGCACGGTAGCAAAAGTTACAATGCGTGAGAGACGCCTCGACTCCTGG CACGGTGTTCGCTAGGGCAAGGATCGAAATGGTCAGGTATACAAAACGAC GAGAAGCAAAAGGCCTGCTTCATGCAACGAGGCCTTGGCGCTGCATATTC GTCCAATTCCTCGTCGTCGTAGTGACTCCGGAAACCACGCATACACAACA GGAACCTGTTCTCCGGGAGCAGCGTGGACGGGTTCAGCGCGGTCAACCCC CTGTGCATCGACTTTTTGAGCCACACTCATGAGATAGGCCACAACCTCGG GTGAGACTTAGAAAGCAAATATTCAAACATGTTAGACAGTACCAGGTAGG TACGTGTCTAGTAGACACCCTACCAGTATATCCAACGCCCCTCAAACCTA CCAGGTATATCCTACGTGTTTTGTTGCTAACTAACTGCCGCCTGTATCGA CTCCAAGAGTACCAACTTCATGCCACCCGTGCTTGATGCAGATGCTACCA CAACCGCGACAACTCCAATACAGAGACCGATTACGCCCACGGGTACCGGT ACTGTGATGGTACGGACCCGTACCGCACGATCATGTCGTCATTCTGCTCC GACCCCGACACTCCTCGCATCAACTGGTTTTCGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig780:4674..5659-

>mRNA_F-serratus_M_contig780.19058.1 ID=mRNA_F-serratus_M_contig780.19058.1|Name=mRNA_F-serratus_M_contig780.19058.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig780:4674..5659- (Fucus serratus male)
ATGGCCGGGAACGTTGGGTTTTCCTGCGGGATCGCATGGCCGGGAACGTT
GGGTTTTCCTGCGGGATCGCGAACCTGTTCTCCGGGAGCAGCGTGGACGG
GTTCAGCGCGGTCAACCCCCTGTGCATCGACTTTTTGAGCCACACTCATG
AGATAGGCCACAACCTCGGGAACCTGTTCTCCGGGAGCAGCGTGGACGGG
TTCAGCGCGGTCAACCCCCTGTGCATCGACTTTTTGAGCCACACTCATGA
GATAGGCCACAACCTCGGATGCTACCACAACCGCGACAACTCCAATACAG
AGACCGATTACGCCCACGGGTACCGGTACTGTGATGGTACGGACCCGTAC
CGCACGATCATGTCGTCATTCTGCTCCGACCCCGACACTCCTCGCATCAA
CTGGTTTTCGAACATGCTACCACAACCGCGACAACTCCAATACAGAGACC
GATTACGCCCACGGGTACCGGTACTGTGATGGTACGGACCCGTACCGCAC
GATCATGTCGTCATTCTGCTCCGACCCCGACACTCCTCGCATCAACTGGT
TTTCGAAC
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