mRNA_F-serratus_M_contig772.18980.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig772.18980.1
Unique NamemRNA_F-serratus_M_contig772.18980.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig772.18980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig772contigF-serratus_M_contig772:259401..260855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932305.9068816-CDS-F-serratus_M_contig772:259400..2595991622932305.9068816-CDS-F-serratus_M_contig772:259400..259599Fucus serratus maleCDSF-serratus_M_contig772 259401..259599 +
1690964244.5078173-CDS-F-serratus_M_contig772:259400..2595991690964244.5078173-CDS-F-serratus_M_contig772:259400..259599Fucus serratus maleCDSF-serratus_M_contig772 259401..259599 +
1622932305.9378443-CDS-F-serratus_M_contig772:260186..2608541622932305.9378443-CDS-F-serratus_M_contig772:260186..260854Fucus serratus maleCDSF-serratus_M_contig772 260187..260854 +
1690964244.5217307-CDS-F-serratus_M_contig772:260186..2608541690964244.5217307-CDS-F-serratus_M_contig772:260186..260854Fucus serratus maleCDSF-serratus_M_contig772 260187..260854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig772.18980.1prot_F-serratus_M_contig772.18980.1Fucus serratus malepolypeptideF-serratus_M_contig772 259401..260854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig772.18980.1

>prot_F-serratus_M_contig772.18980.1 ID=prot_F-serratus_M_contig772.18980.1|Name=mRNA_F-serratus_M_contig772.18980.1|organism=Fucus serratus male|type=polypeptide|length=289bp
FKGNTTKRQRRDEEEGLPEGRPVQSIKKENMIISERHVSQGPATISHLPR
PLNNYPIPQHGAGISTGNDPVPCNCTVSTTDSPAASTVLPRVDPSAPTWL
PQEIGTVTVAKMSDDADWLNRDFPPDAATIEADASQAPTRTANIRPTSFD
STEPVPRKSLETLRSDGGVCSAKETTHLVSNTTVTEIEDSMARAREHVSL
DDGAATALISHRENVVKPKTGVSEEGNTGPEQKLSACGFSLTPGLPGEEK
AVCSKRQGTPDNDIITSVPAEHANAGFFRGKKLSSVVNA
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mRNA from alignment at F-serratus_M_contig772:259401..260855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig772.18980.1 ID=mRNA_F-serratus_M_contig772.18980.1|Name=mRNA_F-serratus_M_contig772.18980.1|organism=Fucus serratus male|type=mRNA|length=1455bp|location=Sequence derived from alignment at F-serratus_M_contig772:259401..260855+ (Fucus serratus male)
TTCAAAGGCAATACAACCAAACGACAACGACGCGATGAAGAGGAAGGCTT
ACCCGAAGGTCGTCCTGTTCAGAGCATCAAAAAGGAAAACATGATCATCT
CTGAACGACACGTCTCCCAAGGCCCCGCAACAATATCACATCTACCGCGT
CCACTAAACAATTATCCCATTCCACAGCACGGTGCTGGCATCAGCACGGG
TGAGCAGCGAGTGTGCGGTTATCGATATCCTGACACGTGATGCAATATGA
GACTAACTAATCAACGAAGGACATAAAGTCGGGTTTGGTATCATATATAG
TACCTTGTGGCCCCTGTTGGCCGTGGATATTGCTTGGTCAAATGCCCTGC
TTTGCAGTGTGTTGCGTACCATGTCGCCCAGCGAGGAAACCGGCCAGATT
ACGGTTTGACGTTGTTAGCTCACGAGCTTTTGTGTCATTGCCAGCTTATA
ACTTTGTCGGGCGTTTGAACCAGGCCACTATGCGGTCGATCTTGAAATCT
TGGTTGTGCATGAGGGAAATTCCACAACATTTAGTCTGTATATCGTCATG
TTTCTCTAAGACTACAAGCAAGATGGTCAAGTGATAGGTCCGTGGCTGAG
AATGCATGTGTTGTGTAACCGTAGTTATGCGTTTGTTTCAAGATTGATGC
GCTGATTGTAATCATGATGATTGTCATTCTTCGCGAACAAAAAGAAGAAG
TATTCCCACATTTTCCCTCCCCGTGTACCACGTCGTGCGCGCCACCCCGC
CACTTTGGCATGACAACCGCGTTGCGTATTGTTTAGGGAATGATCCAGTG
CCGTGTAACTGTACGGTATCAACCACCGATAGCCCCGCGGCGTCTACGGT
ATTACCACGTGTGGACCCTTCAGCCCCAACCTGGTTGCCCCAAGAAATTG
GCACGGTTACCGTTGCCAAGATGAGCGACGACGCAGATTGGCTGAACCGT
GATTTCCCACCCGACGCAGCCACGATTGAGGCTGATGCTTCTCAAGCCCC
AACACGAACCGCTAACATTCGCCCCACATCCTTCGATTCAACCGAACCCG
TTCCTCGAAAGTCGTTGGAGACTTTGCGTTCCGACGGCGGAGTCTGTTCT
GCGAAGGAAACAACACACTTGGTATCCAACACTACCGTCACTGAAATCGA
AGATTCTATGGCAAGAGCTCGCGAGCACGTCTCTCTCGACGATGGTGCAG
CTACTGCACTGATATCTCATCGAGAGAACGTCGTGAAACCAAAAACGGGC
GTTTCGGAAGAGGGAAATACTGGGCCAGAGCAAAAGCTTTCAGCTTGTGG
ATTCAGTCTCACGCCAGGGTTGCCGGGCGAGGAGAAGGCAGTTTGCTCTA
AGCGACAAGGCACACCTGATAATGACATAATCACTTCTGTGCCAGCTGAA
CATGCGAATGCTGGATTTTTTCGTGGTAAGAAGCTATCATCGGTTGTAAA
CGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig772:259401..260855+

>mRNA_F-serratus_M_contig772.18980.1 ID=mRNA_F-serratus_M_contig772.18980.1|Name=mRNA_F-serratus_M_contig772.18980.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig772:259401..260855+ (Fucus serratus male)
TTCAAAGGCAATACAACCAAACGACAACGACGCGATGAAGAGGAAGGCTT
ACCCGAAGGTCGTCCTGTTCAGAGCATCAAAAAGGAAAACATGATCATCT
CTGAACGACACGTCTCCCAAGGCCCCGCAACAATATCACATCTACCGCGT
CCACTAAACAATTATCCCATTCCACAGCACGGTGCTGGCATCAGCACGGT
TCAAAGGCAATACAACCAAACGACAACGACGCGATGAAGAGGAAGGCTTA
CCCGAAGGTCGTCCTGTTCAGAGCATCAAAAAGGAAAACATGATCATCTC
TGAACGACACGTCTCCCAAGGCCCCGCAACAATATCACATCTACCGCGTC
CACTAAACAATTATCCCATTCCACAGCACGGTGCTGGCATCAGCACGGGG
AATGATCCAGTGCCGTGTAACTGTACGGTATCAACCACCGATAGCCCCGC
GGCGTCTACGGTATTACCACGTGTGGACCCTTCAGCCCCAACCTGGTTGC
CCCAAGAAATTGGCACGGTTACCGTTGCCAAGATGAGCGACGACGCAGAT
TGGCTGAACCGTGATTTCCCACCCGACGCAGCCACGATTGAGGCTGATGC
TTCTCAAGCCCCAACACGAACCGCTAACATTCGCCCCACATCCTTCGATT
CAACCGAACCCGTTCCTCGAAAGTCGTTGGAGACTTTGCGTTCCGACGGC
GGAGTCTGTTCTGCGAAGGAAACAACACACTTGGTATCCAACACTACCGT
CACTGAAATCGAAGATTCTATGGCAAGAGCTCGCGAGCACGTCTCTCTCG
ACGATGGTGCAGCTACTGCACTGATATCTCATCGAGAGAACGTCGTGAAA
CCAAAAACGGGCGTTTCGGAAGAGGGAAATACTGGGCCAGAGCAAAAGCT
TTCAGCTTGTGGATTCAGTCTCACGCCAGGGTTGCCGGGCGAGGAGAAGG
CAGTTTGCTCTAAGCGACAAGGCACACCTGATAATGACATAATCACTTCT
GTGCCAGCTGAACATGCGAATGCTGGATTTTTTCGTGGTAAGAAGCTATC
ATCGGTTGTAAACGCAGGAATGATCCAGTGCCGTGTAACTGTACGGTATC
AACCACCGATAGCCCCGCGGCGTCTACGGTATTACCACGTGTGGACCCTT
CAGCCCCAACCTGGTTGCCCCAAGAAATTGGCACGGTTACCGTTGCCAAG
ATGAGCGACGACGCAGATTGGCTGAACCGTGATTTCCCACCCGACGCAGC
CACGATTGAGGCTGATGCTTCTCAAGCCCCAACACGAACCGCTAACATTC
GCCCCACATCCTTCGATTCAACCGAACCCGTTCCTCGAAAGTCGTTGGAG
ACTTTGCGTTCCGACGGCGGAGTCTGTTCTGCGAAGGAAACAACACACTT
GGTATCCAACACTACCGTCACTGAAATCGAAGATTCTATGGCAAGAGCTC
GCGAGCACGTCTCTCTCGACGATGGTGCAGCTACTGCACTGATATCTCAT
CGAGAGAACGTCGTGAAACCAAAAACGGGCGTTTCGGAAGAGGGAAATAC
TGGGCCAGAGCAAAAGCTTTCAGCTTGTGGATTCAGTCTCACGCCAGGGT
TGCCGGGCGAGGAGAAGGCAGTTTGCTCTAAGCGACAAGGCACACCTGAT
AATGACATAATCACTTCTGTGCCAGCTGAACATGCGAATGCTGGATTTTT
TCGTGGTAAGAAGCTATCATCGGTTGTAAACGCA
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