mRNA_F-serratus_M_contig769.18932.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig769.18932.1
Unique NamemRNA_F-serratus_M_contig769.18932.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 8.900e-56
Identity = 98/130 (75.38%), Postives = 111/130 (85.38%), Query Frame = 1
Query:  148 MADMGMGMGADMGGQGGQGAGDDVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            M DMGMGMG +MG             RQFYS+ENIAHN +VL++CRTSLCAVGGIVSG+LGLTG +GL +YL+LY+VVSLSL+VKMGTTDVSLYT+GKGKLA FAFGGVGN+ALTYILFWTLAYTLVYIY
Sbjct:    1 MGDMGMGMGPEMGXXXXXXX---XXXRQFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 127          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.540e-24
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  220 DERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGK--GKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            D++ F +A+N+ HN +++  CRTSLCAV GI +G+LG TG +GL+ YL+ Y  VSL+LL KMG  D S YT+ K    +A F   G+   ++T+ILFWTLAY LVY+Y
Sbjct:   14 DDKGFLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGF-DRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A024GQF1_9STRA (Uncharacterized protein n=6 Tax=Albugo candida TaxID=65357 RepID=A0A024GQF1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.660e-14
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  229 QFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLV-KMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTL 525
            +F   EN+ +NA+V++FC TS+C V G +SG++GLTG  G    L+LY+V  L++L+ KM     + Y    G L TF F G+ +  L++ILFWTLAY L
Sbjct:  810 EFLLMENVQNNAKVIEFCHTSMCVVSGCISGIIGLTGLTGFAFMLMLYIVTDLAILLFKMKNNLKTFYN---GSLLTFLFDGIFSHGLSFILFWTLAYGL 906          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 1.600e-13
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  211 DDVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            DD DE   YS EN+  N R++ + RT L  VGG+++GVLGLTG  G L Y ++ ++ S+ +  K    DV  Y     ++    F G+G   L++ILFWT AY +V+I+
Sbjct:   24 DDADEVPAYSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAK-AKFDVHSYFDSWNRIL---FDGIGQGLLSFILFWTFAYDIVHIF 128          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A7S3ZWF8_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWF8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.460e-12
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  220 DERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            D +  +  + +AHN   +D CR+ L   G + +GV+G TG  GLL ++  YV+ S++LL +M    V  YTS    L  F   G   +AL+++LFWTLAY LV+IY
Sbjct:   10 DAKNLFDRDAMAHNLNAVDGCRSYLTLFGAVGAGVVGATGLRGLLFFVGTYVLGSVALLTRMRCNPVD-YTSE--SLTKFVIMGAPGYALSFVLFWTLAYALVHIY 112          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR)

HSP 1 Score: 72.8 bits (177), Expect = 4.250e-12
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  205 AGDDVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            A D++++   + AEN+ +NA+V+ + RT +  +GG+V+G+LGLTG +G + Y ++  + S+ L  K G +  S + S    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   14 ASDNLNDLPTFHAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 120          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A484K5Q0_9ASTE (ER membrane protein complex subunit 6 n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484K5Q0_9ASTE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11
Identity = 36/108 (33.33%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  214 DVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            ++DE   ++AEN+ +N +++ + RT +  +GG+++GVLGLTG +G + Y ++  + S+ LL K   +  S + S    +     GG+    ++++LFWTLAY +V+I+
Sbjct:   17 EIDELPTFNAENMQNNVKIIYYSRTFMAIIGGVIAGVLGLTGLMGFIFYFLIMGITSVGLLAKAKFSVFSYFESWNRIMLDGFLGGL----MSFVLFWTLAYDIVHIF 120          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A068U343_COFCA (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A068U343_COFCA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-11
Identity = 39/111 (35.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  205 AGDDVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            A D++++   ++AEN+ +NA+V+ + RT +  +GG+V+G+LGLTG +G + Y ++  + S  L  K G +  S + S    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   54 ASDNLNDLPTFNAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSAGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 160          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: UPI00125E678C (ER membrane protein complex subunit 6 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E678C)

HSP 1 Score: 71.2 bits (173), Expect = 1.500e-11
Identity = 37/111 (33.33%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  205 AGDDVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            +G+ +DE   +SAEN+ +N +V+ + RT +  +GG+++G+LGLTG +G + Y ++  + S  L+ K   +  S + +    +     GG+    L+++LFWTLAY +V+I+
Sbjct:   14 SGNGIDELPTFSAENMQNNMKVIYYSRTFMSIIGGVIAGILGLTGLMGFIFYFLIMGITSAGLIAKAKFSVFSYFDNWNRIILDGFLGGL----LSFVLFWTLAYDIVHIF 120          
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Match: A0A7E6FSV8_OCTVU (ER membrane protein complex subunit 6 n=3 Tax=Octopus TaxID=6643 RepID=A0A7E6FSV8_OCTVU)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-11
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  214 DVDERQFYSAENIAHNARVLDFCRTSLCAVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGKLATFAFGGVGNFALTYILFWTLAYTLVYIY 537
            D  +   YS   + +NA ++D+CRTS+ A+GG  +G++GLT   G + Y +  +++S+ L+VK G+     + S +    +  FGG+     TYILFWT  Y +V++Y
Sbjct:   35 DKQDAVAYSEIAVRNNAAIMDYCRTSMSALGGATAGIMGLTSLHGFIFYFISAILLSVMLMVKAGSRWNKYFVSRRVLFFSGLFGGL----FTYILFWTFLYGMVHVY 138          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig769.18932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZV5_9PHAE8.900e-5675.38ER membrane protein complex subunit 6 n=2 Tax=Ecto... [more]
A0A835YLI1_9STRA3.540e-2450.93ER membrane protein complex subunit 6 n=1 Tax=Trib... [more]
A0A024GQF1_9STRA8.660e-1445.00Uncharacterized protein n=6 Tax=Albugo candida Tax... [more]
A0A2K1IUJ4_PHYPA1.600e-1340.37ER membrane protein complex subunit 6 n=1 Tax=Phys... [more]
A0A7S3ZWF8_9STRA3.460e-1240.57ER membrane protein complex subunit 6 n=1 Tax=Pela... [more]
A0A6P6SSX2_COFAR4.250e-1235.14ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A0A484K5Q0_9ASTE1.090e-1133.33ER membrane protein complex subunit 6 n=3 Tax=Cusc... [more]
A0A068U343_COFCA1.110e-1135.14ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
UPI00125E678C1.500e-1133.33ER membrane protein complex subunit 6 n=2 Tax=Ipom... [more]
A0A7E6FSV8_OCTVU1.710e-1135.19ER membrane protein complex subunit 6 n=3 Tax=Octo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig769contigF-serratus_M_contig769:34011..40679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog157072.XP_008875320.1
Preferred nameEMC6
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
Hectar predicted targeting categorysignal anchor
GOsGO:0000045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0022406,GO:0022607,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031300,GO:0031301,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0061919,GO:0070925,GO:0071840,GO:0072546,GO:0097630,GO:0097631,GO:0098588,GO:0098796,GO:0098827,GO:0140056,GO:1903349,GO:1905037,GO:1990456,GO:1990462
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG4455@1,KOG4455@2759
Ec32 ortholog descriptionER membrane protein complex subunit 6
Ec32 orthologEc-23_001080.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons6
Model size1174
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig769.18932.1prot_F-serratus_M_contig769.18932.1Fucus serratus malepolypeptideF-serratus_M_contig769 35019..40532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932299.4480205-UTR-F-serratus_M_contig769:34010..340841622932299.4480205-UTR-F-serratus_M_contig769:34010..34084Fucus serratus maleUTRF-serratus_M_contig769 34011..34084 -
1690964241.5249078-UTR-F-serratus_M_contig769:34010..340841690964241.5249078-UTR-F-serratus_M_contig769:34010..34084Fucus serratus maleUTRF-serratus_M_contig769 34011..34084 -
1622932299.4719172-UTR-F-serratus_M_contig769:34458..350181622932299.4719172-UTR-F-serratus_M_contig769:34458..35018Fucus serratus maleUTRF-serratus_M_contig769 34459..35018 -
1690964241.539176-UTR-F-serratus_M_contig769:34458..350181690964241.539176-UTR-F-serratus_M_contig769:34458..35018Fucus serratus maleUTRF-serratus_M_contig769 34459..35018 -
1622932299.6469126-UTR-F-serratus_M_contig769:40532..406791622932299.6469126-UTR-F-serratus_M_contig769:40532..40679Fucus serratus maleUTRF-serratus_M_contig769 40533..40679 -
1690964241.622768-UTR-F-serratus_M_contig769:40532..406791690964241.622768-UTR-F-serratus_M_contig769:40532..40679Fucus serratus maleUTRF-serratus_M_contig769 40533..40679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932299.500395-CDS-F-serratus_M_contig769:35018..350891622932299.500395-CDS-F-serratus_M_contig769:35018..35089Fucus serratus maleCDSF-serratus_M_contig769 35019..35089 -
1690964241.5579696-CDS-F-serratus_M_contig769:35018..350891690964241.5579696-CDS-F-serratus_M_contig769:35018..35089Fucus serratus maleCDSF-serratus_M_contig769 35019..35089 -
1622932299.5312374-CDS-F-serratus_M_contig769:35374..354641622932299.5312374-CDS-F-serratus_M_contig769:35374..35464Fucus serratus maleCDSF-serratus_M_contig769 35375..35464 -
1690964241.5698771-CDS-F-serratus_M_contig769:35374..354641690964241.5698771-CDS-F-serratus_M_contig769:35374..35464Fucus serratus maleCDSF-serratus_M_contig769 35375..35464 -
1622932299.553314-CDS-F-serratus_M_contig769:35890..359501622932299.553314-CDS-F-serratus_M_contig769:35890..35950Fucus serratus maleCDSF-serratus_M_contig769 35891..35950 -
1690964241.5804927-CDS-F-serratus_M_contig769:35890..359501690964241.5804927-CDS-F-serratus_M_contig769:35890..35950Fucus serratus maleCDSF-serratus_M_contig769 35891..35950 -
1622932299.6040912-CDS-F-serratus_M_contig769:36270..363621622932299.6040912-CDS-F-serratus_M_contig769:36270..36362Fucus serratus maleCDSF-serratus_M_contig769 36271..36362 -
1690964241.5967782-CDS-F-serratus_M_contig769:36270..363621690964241.5967782-CDS-F-serratus_M_contig769:36270..36362Fucus serratus maleCDSF-serratus_M_contig769 36271..36362 -
1622932299.62379-CDS-F-serratus_M_contig769:40452..405321622932299.62379-CDS-F-serratus_M_contig769:40452..40532Fucus serratus maleCDSF-serratus_M_contig769 40453..40532 -
1690964241.6131957-CDS-F-serratus_M_contig769:40452..405321690964241.6131957-CDS-F-serratus_M_contig769:40452..40532Fucus serratus maleCDSF-serratus_M_contig769 40453..40532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig769.18932.1

>prot_F-serratus_M_contig769.18932.1 ID=prot_F-serratus_M_contig769.18932.1|Name=mRNA_F-serratus_M_contig769.18932.1|organism=Fucus serratus male|type=polypeptide|length=131bp
MADMGMGMGADMGGQGGQGAGDDVDERQFYSAENIAHNARVLDFCRTSLC
AVGGIVSGVLGLTGPIGLLAYLVLYVVVSLSLLVKMGTTDVSLYTSGKGK
LATFAFGGVGNFALTYILFWTLAYTLVYIY*
back to top

mRNA from alignment at F-serratus_M_contig769:34011..40679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig769.18932.1 ID=mRNA_F-serratus_M_contig769.18932.1|Name=mRNA_F-serratus_M_contig769.18932.1|organism=Fucus serratus male|type=mRNA|length=6669bp|location=Sequence derived from alignment at F-serratus_M_contig769:34011..40679- (Fucus serratus male)
GCTCCGGCACCGTCTCTGTGCTTGGTGACAGCGTGATCCAGGGAAAAGAG CGGTAACAGCGGCGGGGTTAACATCGCTTACGATCCACAAACCCGAAAGA AAAGGTAGTGCGTGCAGAATCAGAGCGTTTCTGAAAAGAAGGCGACCATG GCGGATATGGGAATGGGTATGGGCGCCGACATGGGCGGTCAGGGTGGTCA GGGCGCTGGAGACGACGTGGATGAGAGGTAAGGGGATAGTTCCGTCAGGG CTTTGCCTCAGTCATTGTCTACGAGACTTCCGTCAGCTGACTTAGATAAG CGGGTTCCCTCCCTACACCTTTGAATTCTTAATCTATAGCCATACGGTCG GCCACTTAATAGACATTGGAGCACAATGATTTCCGAGTACCAAAGGCGCT TTGTACTTAGACGATGCAACGAGTACGTCAACCCTTGTGATACTTGAGAG AGCTTAACAGGCGATCAACCACCTGTTTATTTTCCAGCCTTGATTGGGCA GCGAGATCAGGAGCCCGAGTAGAACACCGTCCCAAGCTGAAACCAGTCCC AAAGATACGGCTCACCGACGACCCAACATAATTCAACCCCGCACACCTAT GCACGGTACAATATGTAAACCCCAAACCAACTTTCCTCTTCACTTTTGAC TAGGCTTATTTTTCGGGTTGACATATGCTCAAAATAGCAAAATATGCGCG CAGTTCATGCTTATTTTCCTTACTTATGCTCGTACTTATGCGCGCGTTTC TTCACCCCTAATATGATGCTTGGTTTATGCTTGTTTTCTTCGGTTATGCT CGACGTGGGCTTCGTCGAAATGCTTGTGATGTGTGCTTGATGCATTTTTG TGCTGTTGTCGTCGGTTATGCTGTCGACAATATTCAAAGAAAAATCAGAA CGCGCCTATACCTTCTGAGCTGTCATCCCCCAGTCAAGAGGGAAAAAATG TCAAAACGGTTAGGTGGGATCATGGGCTGCAAATACAAAACTTCTTCATG GCATATAAACGGGTTCCCTATGGTCGTAACATTGGGTCAACAACAGTATA AGGTCGGGGAGAAGCCCACCGTTATTCTGTACACTTACATTAATCGCCAT GCAGGGACACCAGAAAAACGAAAAAGATAAAAACAATGTAGTACATCGCC GGTACTTTCAACATGCCCACTTCACACCAATAGTGGGCGTGGGAAAGAGT GGCGTATAGTAATTGGCCCATGGTGACCTTCTAAAGCAGCACGCGTTCGG AATTACCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGCAGT GAACGCCATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTAACCC GATGGCGTATAGCGGTTTAAAATAAATATATGGACGCCGCCGCGGAACTC GGGAGGAATCCCGTAAGTAAGAACCAGATTCAGCCTGAGTATGGAGATGA GTAGGCTGACGCGGGACGGGGCTGCCGTACCGTCTCGCGAGACCAAATTC TCTGGCACGAACGCGGACAGGGGAATATCCATTTTCCCTGTTCAGCTGAC CACGAGCAGGATGGGCAACCTTACCCGGTTGATCCTTACTCTTGCTATAT GTGTGACCATACATCATCAAACATGGTAGTAATAATATACTCTTACATAG GCTCTAAAGACGAAAAAACTATACGGTATTTAAACGGGTTCCCCGATGGT AGTAACAATGGGCCAACAGTATAATATCGGGGAGAAGCCCACCGTTATAC TGTACACTTACATTAATCGCCATGCAAAGCCTTCAAGCATGACAAAACAT GGGGCAACCATTGTTGTACCATATATTTTTGAAGTACTTGTGTGTGTGTG TGTGTGTGTGTGTCGTGCGCGCGTTCTACGTTTTGCGTTCTGCGTTCTGC GTTTTTTTTGGCGGTATACATATATGGATGCCGCCGCGGAAATCGGGAGG AATCCCACGAGTAAGTAATATATTCAGCCTGAGTGTGAAGAATGAGAAGG TTATCGCGGGATGGGACGGCCGAACCCGTCTTGCGAGACCAAATTCTCAG GCGCGAACGGGGACAGGGAAATATTCATTTTTCCTGTCCAGCTGACCACG AGCAGGATTGACAGCCTTACCCGGCTGATCCATACTCTCCTCTATGTAAT GGCCATACATACTTCCAACATGCCCACTTCATACCAATAGTGGGTGTAGG GAAGAGAGGCGCATATTAATTGGTCCATGGTTACCTGCGAAGGCAGCACT CGTTTGAAACTACCTTGGGGTTTACTGGCCCTATGCCGGCGGACTCTCGG CAGTGAACACTATCGGTACGCGATTACGTGACCCGATAAACTCGTGACTG GCCCGATGGCGTATGGCGATTTAAAATAAATAAATGGACGCCGCCGCGGA ACTCGGGAGGAATCCCGTGAGTAAGCACCAGATTCAGCTTGAGTGTGGAG AATGAGCAGGCTGCCGCAGGACGATACGGCCGAACCCGCTCCCTCGAGAC CAAATTCTCGAGACCAAATTTACAGGCGCGAACGGGGACAGGAAAATATT CATTTTACCTGTTCAGCTGACCGCGAGCAGGATTGGCAACCTTACCCGAC TGATCTATACTCTGCTATATGAAATGGCCACGCATACTTTAGCATGCCCA CTTCATACCAATAGTGGGTGTGGGGAAGAGAGGCGCATATTAATTGGTCC ATGGTGACTTGCGAAGGCAGCACCCGTTTGGACTCTCGGCAGTGAACGCC ATCGGTACGCGGTTGCGTGACCCGATAAACTCGAGACTGACGCGATGGCG TATGGCGGTTTAAAATAAATACATGGACGCCACCGCGGAACTCGGGAGGA ATCCCGTAAGTAAGCACGAGATTCAGCCTAAGTGTGGGGGTGAGTAGGCT GACGCGGGACGGGACTGCCGAACCCGTCTCGCGGGACCAAATTATCAGGC GCGAACGGGGACAGAGAAATATTATTTTTCCTTGTTCAGCTGACCACGAC CAGGATTGGCAGTCTTACCAATCTGACCCATACCCTTGCTATATGTGATA ACCATACATATATACATGCACAGAACAATATGAACGTCTCTAAACCTTCC AAGCATCCATATCATCCGGGGGAAACGCTTAGTTGGGAACATCGGCTGTT CGAACAAAAGCTTCACATGGGATTTAGTCGGCGAGATGTTCGACCAATGG CATTCGGCAGTATATTTCGGCGAGGAATCCACCGTTATGATCTTGTGCCA TCGGTACGCAACTGCGTGCGTCATCCAGTACAAGTCGGGAGTGGCCCGAT GGCGGTTCACGGAATAGATAGACGCCTTCATCGTCATAGTCTATATTTGC GGAAAGCGGGGGGAATGAGAGGAGCCCCTAAGTAAGGATCGGATTCAACC TGGATGTGGAGAGGGAGTGCTGACGCGGGACGGGACAGTCGAACTTGTCG CGCTAGACCATATTCTCAAGGCGTGAACGGGGACAGGAGAAAAATAGTTT TTCCTTGTTTGCTGACCGCGAGCAGGATTGGCGAACATACTCGGTTGATC CACACTCTTGATAACATTTTATTCTTGTTTCCGTAGCGGAGAGCGTCATT AACCAATGGACGTGAGTTAAGTAAAGTTCGACCATTGGTTGACAAGGTGT AAGAGTGCTGAACTTGCATCGGTATTAAAAAGTCGTAGGCAAGATAAGAA CTGGGGAAGCATGGGAAAATTGTTAGTGACCACAGTATAGGCAGGAAGAG GATGGGAACGTTGCAGCAGGTGGGATTTGTAACCTATTGCACGTTGAGAC CCTTTATCATCGGCCGTACGAGATACGGCAAAATGAGGTGAGGCACAGAA AAAGAAGAAAAAACACATTGAAAACCATACATTCAGAGTATACACTTGCA CTACTCACCATTTAGGTACCACACACCGAAACCGAAGGCTGAAACACGTG ATCATGTGCGCTCCCCTTGTATGAAGTAATTGTATAACGTAGACTCCCGT ACTAGACAGGCATCAACAGGCATCTGTACTTTGTACGCCGAACGGTGTCG AGGGTCTCATCACTGCTGTACTGTCCCTGAGTCTGACCGTTTTACAGTTG AACCTGCGGCAATGAGTCGCCGGACGCGGAATCAAGCTCATGTCTTGGCC TTTGACTCCAAGCCGTGAAACCATAGGCTAGCGAGGCAAAGTCGTATCGC AACGGACCCTCCCTGATGCACAGCATAGAGCTGAACGGAGTCCATCACTA GGCCGAACATTGTTTCCACCGACGCCCCTTGCGCTTGCAAACTCTCGCCC GACTGCGCCCGGTGCAGGCAGTTCTACTCGGCCGAGAACATCGCTCACAA CGCCAGAGTGCTTGACTTCTGTCGGACATCCCTGTGCGCCGTCGGTGGAA TCGTTTCCGGTAAGCACAACCACGTGATGCCCTTTACTCTTTTCGGGACG GTCTCGAGCTAATTTTTTGCGCCGTACGTAGTAGAGTACATCCCACCGCC TTATTTTTTGTTTTGCGCAAGAGCTGTCGGGATTTTTCCCTTCGATTTTC CCTGAGGCTGCCGACAGCGTCTCAAGCTGCTTCTTGTCTGGACTCTTCCG TGTTCTCCCGACACCATTGGCCTTACCGGGCAGCGTTGACATTTTGAGGC TCTCGGGGTCACATCACATCTCGAGAGGTTCGCCTTCGTCTGACGGGTTT TTTCCATCCCATGCTGAAACGTTTCGCAGGCGTCTTGGGGCTAACGGGGC CAATAGGACTCCTGGCCTACCTCGTACTGTATGTTGTCGGTGAGCGAGCG CGATGCGTGCCTTGGCGAGAGAGCGAGGCCGATTCCCAGGCTGGTTTCCC AGCGGTTGTTGGGGTTACCGCCGTACGTTAAGTTCCTCTTTCGACGCCTC AACGGAGGTGAAAACCCTAGGGGGTGCGATCGGATACAGTTTGGCTAGGA GGGCCCGCCTGGGCGTGGAAGGTCTGAAGCGCAAGTATAGGTCAACGCAA GCTCGGTTAACGCGTTAGGACATCGCAATCAATGCTAACTGTGTCGCTGC CTTGCCATGCTCTTTAGGAAAAAAGAGTCGGTGACAGCGACGATGAAACT CTTGCGCGGTACCGCTGCCTTCATTATTTCCCCCTTCTCTAACGATTTCC CCCTGCTGCGCGACCGCCGCCTCCGGTCGTTTCTGCCTCTGCTCTACACG GGGGGGCGGGGGAAGTGTCCTTGAGTTTGTTGGTAAAAATGGGCACCACG GACGTCTCCCTGTACACCAGTGGGAAGGGAAAGCTGGCGACGTTCGCCTT TGGAGGTGAGCGCCGAAATACAAGCGTTGTTTGCTGGAATATGGTACACC CCACTTGCCTTTTTTCTCTGAGCAATTATTAAAAATGGGGGAAGCTGCCG CTGAACGATGCAGGCCTGTGATGCAGACAGCTTGAGGCAACTCCAACCGG GACAGGGACCGGGAGCTTGCTCTCCGGGAACCGGCCGAGCAGTACCTCTG CATATTTTCACTCAACAACACATTCCGGAGCGTGGCCTCGTGTCATATCG CGCGTGCCTGAATCCCTCTTGCCTCTTTTTTCTTACCCAGGGGTTGGGAA CTTTGCGCTGACGTACATTCTATTCTGGACGCTGGCCTACACCTTGGTGT ACATCTATTAACGCGATTTGTGAACGGCGCGAGGCAACCGAATTCTCCGT AGCAGAGTGCCGACGCGGTCATCGGAAGCGATCTGCCTCGCGAAAAGACG GCGGTCGTACCCGGGTTATAAATCTTAGGGCGGTTCTCCATTCGAGCGCG TTACAGGGGTAGACTCTGGGTGAGCGAGTTTTTGTATTAAAAGTTGTTTG TGTTCGTGGTTCCATCCTCAACGACAAGCGCCTGTTCCTACCGGGAGTGT GTTTGTTCCCCTCAAAGTGACAAGAGGCAAAGGGTGTCGGCTTGAGAGTC GCTGTCTCCGAGCAAAGTGGTGTGGTAGGCCTACTGGCGAACGATCGTCT CACCCGCAACCGTGTTTTGTTTTGTGAGCAGCAAAATGCGAGAGGATGTA CCCTAGCGATTTTTAACGCCCCCCCCCTTTTTCGTCTACACGGCAACCCT CTTCACGACCGAGCGGAAAGTTCAATGCGCCGTGCGGGGGATGTTCCCGT TAAGATGGCGTCCGCGGAGCTCTTTCCTCGCCAACGCCTCCTCCTGTTCG AGCTCTTCCTCCACCTGGGAGGCAACCGAGAGGCCAATATTTTTTCTAAT GCCTCGTTGTTTCGTGTGGGCTGGATATTAAGGATATCCGTCTAACGATC CGTCCCTTTTTCTTCCCCTGAGCTCTGGGATTATTGATACTGATCTCAGT ATTCCTCGTTACGGCACATCCTGCGCACTCTAACCCATCCCACTTTACTG TAAGACTCAATATATACCGTTTTTCACCCCACGAAATGTGTTCCTGGTGG GGCCCCCTTTTGGGGCTGTGGCGTGACTTCCCAAAGTGAAACGCTAAATA GGAATGACGCGTGTGCGGCGGCGGAACGATATCTATCCCGCCGCATAAAA CAATCGTATCTTGAGGTAACCCCCGATCTTCAACACCTTTTTTAGGCGGC GCTCCAATTGCGTGCGCTCTGCTTCCAGCAAGGCTAGAGTGGCTTCCGCC CGCGCGGTGCTCATGGCCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig769:34011..40679-

>mRNA_F-serratus_M_contig769.18932.1 ID=mRNA_F-serratus_M_contig769.18932.1|Name=mRNA_F-serratus_M_contig769.18932.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig769:34011..40679- (Fucus serratus male)
ATGGCGGATATGGGAATGGGTATGGGCGCCGACATGGGCGGTCAGGGTGG
TCAGGGCGCTGGAGACGACGTGGATGAGAGATGGCGGATATGGGAATGGG
TATGGGCGCCGACATGGGCGGTCAGGGTGGTCAGGGCGCTGGAGACGACG
TGGATGAGAGGCAGTTCTACTCGGCCGAGAACATCGCTCACAACGCCAGA
GTGCTTGACTTCTGTCGGACATCCCTGTGCGCCGTCGGTGGAATCGTTTC
CGGCAGTTCTACTCGGCCGAGAACATCGCTCACAACGCCAGAGTGCTTGA
CTTCTGTCGGACATCCCTGTGCGCCGTCGGTGGAATCGTTTCCGGCGTCT
TGGGGCTAACGGGGCCAATAGGACTCCTGGCCTACCTCGTACTGTATGTT
GTCGGCGTCTTGGGGCTAACGGGGCCAATAGGACTCCTGGCCTACCTCGT
ACTGTATGTTGTCGTGTCCTTGAGTTTGTTGGTAAAAATGGGCACCACGG
ACGTCTCCCTGTACACCAGTGGGAAGGGAAAGCTGGCGACGTTCGCCTTT
GGAGTGTCCTTGAGTTTGTTGGTAAAAATGGGCACCACGGACGTCTCCCT
GTACACCAGTGGGAAGGGAAAGCTGGCGACGTTCGCCTTTGGAGGGGTTG
GGAACTTTGCGCTGACGTACATTCTATTCTGGACGCTGGCCTACACCTTG
GTGTACATCTATTAAGGGTTGGGAACTTTGCGCTGACGTACATTCTATTC
TGGACGCTGGCCTACACCTTGGTGTACATCTATTAA
back to top