mRNA_F-serratus_M_contig75.18743.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18743.1
Unique NamemRNA_F-serratus_M_contig75.18743.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: D7FQB5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB5_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 1.110e-107
Identity = 180/272 (66.18%), Postives = 199/272 (73.16%), Query Frame = 1 
Query:   49 MAKLGEPPSEWSASKLSGWLAEGRKLDPDAIDALALCDVDGRMFLEMDEEDLAESEELGLDMKSIHDVLQLQADLEALEVSHHNQNHPADAS------TNDPRPE----------------GRESTAPQEPDGPRETSSCSS-----SWTLPCVSVDKDGNSYFAEKTVRLGAGT-GAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVLPDDFKL 780
            M+ LG PPS WSAS+LS WL E  KL+P+AIDALALCDVDGRMFLEMDEEDLAES+ELGLDMKSIH  L+LQADLEALE+SHH +  P   S      T +P+P                 G     P    G      C S     SW+LPCVSVD +GNS+F ++ V LGAGT G+GIGALS LIPT GLKFRETPGDYDFDFH APARQL+VSLD  VDIEVTDGTR+VF  GTVMLAEDTWGKGHRSRAVDGK RKSLF+VLPDDFKL
Sbjct:    1 MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPRPXXXXXXXXXXXXETAGSSGEPPCTLGGESSVGGCGSGGGSRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKL 272
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A7S4C942_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C942_9EUGL)

HSP 1 Score: 128 bits (322), Expect = 4.310e-32
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:  406 SSWTLPCVSVDKDGNSYFAEKTVRLGAGTGAG-IGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDG 732
            S W +P V+VD+ G SY++  T+ LGA  GA  IGALS ++    ++ RETPGDY FD+H AP +Q IV+LD AVD+EV+DGTRKV   G +   EDTWG GH SRAV+G
Sbjct:   12 SEWVIPVVAVDEAGKSYWSSMTIPLGASGGANSIGALSEVMKVTTMQIRETPGDYKFDWHCAPRKQFIVNLDGAVDVEVSDGTRKVVSAGEMFFVEDTWGTGHLSRAVNG 121
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A7S1NNL2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNL2_9EUGL)

HSP 1 Score: 127 bits (319), Expect = 8.080e-32
Identity = 60/109 (55.05%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:  445 GNSYFAEKTVRLGAGTGAG-IGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVLPD 768
            G+SYF  K++ LG   G   IG+LSA +P  GL  R+TP DYDFD+H AP +Q +V+LDAAV+IEV+DG++KV   G + L EDT G+GHRS++V+G+PR+SLFI + D
Sbjct:    1 GHSYFTTKSIPLGPSHGPNSIGSLSAAMPVTGLVVRDTPADYDFDWHVAPRKQFVVNLDAAVEIEVSDGSKKVLGAGEMFLLEDTEGQGHRSKSVNGQPRRSLFITVAD 109
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A7C7YFX1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YFX1_9DELT)

HSP 1 Score: 123 bits (309), Expect = 2.680e-30
Identity = 54/87 (62.07%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:  502 IGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVL 762
            IG +S L P  G+ FRET GDYDF FH AP RQ +++LDAAV++E  DGT++V  PG V+LAEDT G+GHRSRAVDG+PR+S+F+ L
Sbjct:   29 IGRISTLEPATGIVFRETEGDYDFGFHNAPRRQYVINLDAAVELETGDGTKRVVGPGEVLLAEDTTGRGHRSRAVDGRPRRSIFVTL 115
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A2D6BQH0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BQH0_9DELT)

HSP 1 Score: 122 bits (306), Expect = 7.160e-30
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:  442 DGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVL 762
            DG S+F ++ + L       +GA+SAL    G+ FRET GDYD  FH AP RQ +V+LDAAV+IE  DGTR+V  PG ++LAED  G+GHRSR+VDG+PR+SLF+ L
Sbjct:   11 DGESHFEDQEMPLRER--GPLGAISALQEATGIVFRETDGDYDLGFHNAPRRQYVVNLDAAVEIETGDGTRRVLGPGEILLAEDLTGRGHRSRSVDGRPRRSLFVTL 115
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: UPI00096B5534 (uncharacterized protein LOC109581817 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B5534)

HSP 1 Score: 119 bits (299), Expect = 1.400e-28
Identity = 56/123 (45.53%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  412 WTLPCVSVDKDGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVLPDDFKL 780
            +T+  +   +DG S+F   TV++       IG++S +IP+ GL FRETP  Y++ +HTAP RQ IV+LDA+V + V+ G +++ + G V   EDT GKGH S +VDGK R+S+F+ +PDD+KL
Sbjct:   15 FTITRIYSSQDGESHFG--TVKIKMKGKGDIGSISDIIPSTGLMFRETPSSYNYSWHTAPRRQFIVNLDASVQVTVSSGEKRILKEGEVFFVEDTTGKGHFSESVDGKVRRSVFLPVPDDYKL 135
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A2E1A164_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A164_9DELT)

HSP 1 Score: 118 bits (296), Expect = 1.890e-28
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  442 DGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVL 762
            DG S+F +  V +       IG LS LIP  G+ FRET GDY +++H AP RQ IV L+  VDIEV DGTR+VFQ G ++LAEDT G+GH SRAV G+PRKSLF+ L
Sbjct:   11 DGQSHFEDIDVPIF--DHGDIGKLSKLIPATGVIFRETSGDYHYEWHNAPRRQYIVMLEGEVDIEVGDGTRRVFQTGDLLLAEDTTGQGHLSRAVKGQPRKSLFLTL 115
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A7C8CI49_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CI49_9DELT)

HSP 1 Score: 118 bits (296), Expect = 1.890e-28
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:  427 VSVDKDGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVL 762
            +   +D  S+F +  + L  G GA IG++S+L    G+ FRET GDYDF FH AP RQ +++L+A V+IEV DGTR++   G V+LAEDT G+GH SRAVDG+PR+S+F+ L
Sbjct:    6 IYTGEDNESHFEDLEIPL-KGFGA-IGSISSLEGATGIAFRETEGDYDFGFHNAPRRQYVINLNAGVEIEVGDGTRRLLGAGEVLLAEDTTGRGHISRAVDGRPRRSIFVTL 115
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A3M1PHZ0_9PROT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3M1PHZ0_9PROT)

HSP 1 Score: 118 bits (296), Expect = 2.260e-28
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:  442 DGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVLPD 768
            DG S+F E  + L    GA IG LS   P   L FR T GDYD+D+H APARQ ++ L+  VDIEV  G  + F PG ++LAEDT G+GHRSRAVDG+PR+SLFI LPD
Sbjct:   16 DGESHFEEIAIPL-QDAGA-IGLLSQGHPVRELVFRLTEGDYDYDWHNAPARQYVIMLEGQVDIEVGSGEVRRFGPGDILLAEDTTGRGHRSRAVDGRPRRSLFITLPD 122
[Close]
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Match: A0A800LVS0_9BACT (Uncharacterized protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A800LVS0_9BACT)

HSP 1 Score: 117 bits (293), Expect = 5.040e-28
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:  436 DKDGNSYFAEKTVRLGAGTGAGIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDGTRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVL 762
            D +G S+F +  + L       IG LS+++   G+ FR+T GDYDFD+H AP+R+ IV LD +V+I   DG  ++F  G ++LAEDT G+GHRSRAVDGKPRKSLFI+L
Sbjct:    9 DGNGQSHFEDVDIPLS--DTEDIGRLSSVLQATGVIFRKTEGDYDFDWHPAPSRRFIVMLDGSVEITAGDGETRIFNTGDIVLAEDTQGRGHRSRAVDGKPRKSLFILL 115
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB5_ECTSI1.110e-10766.18SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4C942_9EUGL4.310e-3255.45Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1NNL2_9EUGL8.080e-3255.05Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7C7YFX1_9DELT2.680e-3062.07Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2D6BQH0_9DELT7.160e-3055.14Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
UPI00096B55341.400e-2845.53uncharacterized protein LOC109581817 n=1 Tax=Amphi... [more]
A0A2E1A164_9DELT1.890e-2857.01Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A7C8CI49_9DELT1.890e-2851.79Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A3M1PHZ0_9PROT2.260e-2856.88Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A800LVS0_9BACT5.040e-2852.29Uncharacterized protein n=2 Tax=FCB group TaxID=17... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:82412..92683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog227086.JGI_V11_71403
Hectar predicted targeting categoryother localisation
EggNOG OGs2DZCW@1,2S6XB@2759
Ec32 ortholog descriptionSterile alpha motif, type 2
Ec32 orthologEc-01_006730.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1443
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.8958437-UTR-F-serratus_M_contig75:82411..830711622932258.8958437-UTR-F-serratus_M_contig75:82411..83071Fucus serratus maleUTRF-serratus_M_contig75 82412..83071 -
1690964222.469703-UTR-F-serratus_M_contig75:82411..830711690964222.469703-UTR-F-serratus_M_contig75:82411..83071Fucus serratus maleUTRF-serratus_M_contig75 82412..83071 -
1622932259.0084121-UTR-F-serratus_M_contig75:92635..926831622932259.0084121-UTR-F-serratus_M_contig75:92635..92683Fucus serratus maleUTRF-serratus_M_contig75 92636..92683 -
1690964222.5413039-UTR-F-serratus_M_contig75:92635..926831690964222.5413039-UTR-F-serratus_M_contig75:92635..92683Fucus serratus maleUTRF-serratus_M_contig75 92636..92683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.910518-CDS-F-serratus_M_contig75:83071..831491622932258.910518-CDS-F-serratus_M_contig75:83071..83149Fucus serratus maleCDSF-serratus_M_contig75 83072..83149 -
1690964222.4806654-CDS-F-serratus_M_contig75:83071..831491690964222.4806654-CDS-F-serratus_M_contig75:83071..83149Fucus serratus maleCDSF-serratus_M_contig75 83072..83149 -
1622932258.9278784-CDS-F-serratus_M_contig75:83559..837291622932258.9278784-CDS-F-serratus_M_contig75:83559..83729Fucus serratus maleCDSF-serratus_M_contig75 83560..83729 -
1690964222.4955335-CDS-F-serratus_M_contig75:83559..837291690964222.4955335-CDS-F-serratus_M_contig75:83559..83729Fucus serratus maleCDSF-serratus_M_contig75 83560..83729 -
1622932258.9465227-CDS-F-serratus_M_contig75:84039..843431622932258.9465227-CDS-F-serratus_M_contig75:84039..84343Fucus serratus maleCDSF-serratus_M_contig75 84040..84343 -
1690964222.5096555-CDS-F-serratus_M_contig75:84039..843431690964222.5096555-CDS-F-serratus_M_contig75:84039..84343Fucus serratus maleCDSF-serratus_M_contig75 84040..84343 -
1622932258.966386-CDS-F-serratus_M_contig75:88049..881451622932258.966386-CDS-F-serratus_M_contig75:88049..88145Fucus serratus maleCDSF-serratus_M_contig75 88050..88145 -
1690964222.5228035-CDS-F-serratus_M_contig75:88049..881451690964222.5228035-CDS-F-serratus_M_contig75:88049..88145Fucus serratus maleCDSF-serratus_M_contig75 88050..88145 -
1622932258.99154-CDS-F-serratus_M_contig75:92548..926351622932258.99154-CDS-F-serratus_M_contig75:92548..92635Fucus serratus maleCDSF-serratus_M_contig75 92549..92635 -
1690964222.532607-CDS-F-serratus_M_contig75:92548..926351690964222.532607-CDS-F-serratus_M_contig75:92548..92635Fucus serratus maleCDSF-serratus_M_contig75 92549..92635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18743.1prot_F-serratus_M_contig75.18743.1Fucus serratus malepolypeptideF-serratus_M_contig75 83072..92635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18743.1

>prot_F-serratus_M_contig75.18743.1 ID=prot_F-serratus_M_contig75.18743.1|Name=mRNA_F-serratus_M_contig75.18743.1|organism=Fucus serratus male|type=polypeptide|length=245bp
MAKLGEPPSEWSASKLSGWLAEGRKLDPDAIDALALCDVDGRMFLEMDEE
DLAESEELGLDMKSIHDVLQLQADLEALEVSHHNQNHPADASTNDPRPEG
RESTAPQEPDGPRETSSCSSSWTLPCVSVDKDGNSYFAEKTVRLGAGTGA
GIGALSALIPTAGLKFRETPGDYDFDFHTAPARQLIVSLDAAVDIEVTDG
TRKVFQPGTVMLAEDTWGKGHRSRAVDGKPRKSLFIVLPDDFKL*
back to top

mRNA from alignment at F-serratus_M_contig75:82412..92683-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18743.1 ID=mRNA_F-serratus_M_contig75.18743.1|Name=mRNA_F-serratus_M_contig75.18743.1|organism=Fucus serratus male|type=mRNA|length=10272bp|location=Sequence derived from alignment at F-serratus_M_contig75:82412..92683- (Fucus serratus male)
CGAACAATAGCACGGGTACAATAACGACATTAGCGCAGGATCGCAAGTAT
GGCCAAACTTGGGGAACCTCCATCGGAATGGTCTGCATCAAAGCTGAGTG
GGTGGCTTGCTGAAGGCCGGAAGCTCGACCCTGATGTGAGCAAAATATTT
ACGTCGTATACCTGTACAGTATTGTGCCAGTATCATAGTCCATGGTAACC
TGCCAAGGCAGTACCCGTTTGAAACAACCTTGAGGTTTACTGGCCCTGTG
CCGGCGGACTCTCGACTGTGAACGTCATCAGTACACAGTTGCGCGATCCG
ATAAACTTGGGACTGACCCGATAGCGTATGGTGGTTTATCTAAATATATG
GACGCCACCGCGGAACTCGGAAGGAACCCCGTAAGTAAGCACCAGATTCA
GCCTGAGTGTCGAGATTAGCAGGTTAACGCGGGACGGGACTGTCGAACCC
GTTTTGCGATATGATGCGCGAGAGCAAGATTGGCGACCTTACCCATTTGA
TCCTTACCCTTGCTATACGTGATGACCATACAGACAGACAGACAGACAGA
CAGACAAGAGACACACATTTGATGTGTCCATATGCCCGATACAACCAATC
GCCCCGGTGGTTCAGTAGGTAACCTCTAAAACTTCTGACGTTGGGACGGA
GTTCGAATCTCGGTGTCCTTACACGAACTTGGATTCTTCCTCACAAAAAA
AATAGAATAGGTATAATATTTTCTAATAAATACCCAACAAGTGGAGAACG
ATTAAATCGTTCGCACACAAAATTCGACTTCACGGTCGACGAGGGAAAGG
AGCGGCTAAATCCTTCTCGCGATAAAAATTAAGGGGCTTCGCCAAAAAGG
GGCACACCTAAAAAACATATGGACAATCTACATTAAACGTAGCATGATTT
TTTACTGTTCCCCTTTTTGGCGTAAGAATACAAAATACAGGGGAATCAAT
ACCCCCCTGTGTCTATTCAGCTCAACAAGTACCCCCTCTTGGCCGTAGAG
ATTACCCCTTTTTGGCGAAAACACGAGATTATTTCCAGGATTATTTCCAG
AGCAAAATAGCACTACATCCAGGCACCACAACTAAGACTCTAGTGCGCTT
CAGCCCCATTGCGCGACCGCCTTCATTTCGTGACATTTACATATGGACGC
TTGCAACAACGTGTAAAATCAGCGCGTCTCCGTGCCTGCGGTTCGTTCAT
GACTTTGTAAGCGTGTTCAACATAATAAATAGTTGTGGTTGGCGCCATTT
TAGCACGGAACGAGCTGCAATGCGGCCTCTTCGCGGTCAAAACTTTTTGC
GGGATTCGCAACCGCTGAAATATTGTTTTGATCTGTGCAGTAGTATATCT
GGAGAATCTAGTCCTTGCAGTACCGTAGTATTCAACTTGTTCACCCTGAT
TCGCCCTTCATGGCATATACCCTTTTTACCCTTTTTACAGCTCACACCAC
AAAGAGAGGGCAAGCAAGGTGTACCTAGCGTTGAAATCCTAAGGTTTTCC
CTCAAGCCAACCTTTATGGGCGACAGAAACGATAGTAAATAACAGAAAAG
TGAAATACAGAAAAGTGAAATTTCTGTGGTGAAATTTTTGGAAACGTCGC
ACTATGGACCCCGAAGCACAGAAATTTCGCCCTACAGAAATTCGCAATTT
CTGTGGGAGGCTGCTTTCCTCTTGCCACCTGCAGAAATTAGGCAAAATTC
TGTAGGTGGCTCGACAAGTTTATTTCGTCACAGGAATGATTTACGCCTTC
CAAAAACGATTGGGAGGTCGGGACTGTAGCATCCCTGCTATCAAATATCG
GCAAAGAAGAGCTCGCGAGTGATGTTGTTGTACAATGAGTGCCGAGCAGC
AGTACAAGTAGTTGTGCGATGACCGCCGGAGCAGCAGATTTGGAGGAAAT
TTATAGAAGCTGTTGAGGTGATGGGCCCGGGCAAGCAGATTTGGAGGAAA
ATGATAAAAGCTGTTGAGGTGATGGGCCCGGACAAGCTGATCGCCGGCGG
CGGTAGCGGTTGAATGGGTGGCGCCGGAGATCAAGCAGGGACGGACTGCT
AGTACGAGCATCCGACAGCTCACCATCGTTCGAAACGATGTCGATCTGCC
AACTCTATTTGCGATATACTCGTAAATTAAGTACTAAACGACCATGGCTC
GCCAGGCCAAATTCTCAGGCGCAAACGAGGAGGAGAGGGAAATACTAATT
TTCCCTGTTCACTTGACCACGAGCAGAACTGGCAATCTTACCTGGTTGAT
CCATACTCTTCTATGTGTACATACTTGCACCTGTCTTCGTGCGGTGATGG
GTGGCCGGAAATGCCGGGGTTAACGCGATATGCTCCCCGTTCTTTTTTGT
ATTTTTCCTATATTCCGTAAACGACCAACTACAGTTTATCCCCACGTTTT
TTTGGCCACAGAATTTACAAATTTCTGTAGTTTGTTTTTTTCTGTTTTTT
CGTTTCCCATATAGGTTAGCGTCATGCCTTTTTAAAGAAAAATCTGAATG
CACCTAGACCTTCTGATCCGAAGGCGTTTCACATTGCCTAGTAAAAAACA
GAAAAAGCGGTCTTCCTGGCGGGACTGTTGCCTCATTTAATCGTTTTCTA
GGTGTGCCCCTTTTTGGCGCAAAAATAGAGAGGTGTACCCCTTTTTGGCG
AAAGGCAAGCACCCCAAAAGGAAGGAAGAAAAATCCTGTGTACCCTTCCT
CCTGTGTGACCCCGACCCCGGCTGGTACGTCTACAAACCTGACGTGGAGA
ATATGTGTATGTATGGTCACACATATAGCAAGAGTATGGATCAACCTGGT
AAGGTTGCCAATCCTTCTCGTGGTCAGCTGAACATGGAAAAAGAGTATTC
CCCTGACCGCGTTCTTGCCTGAGAATTTGGTCTCGCGAGACGGTTTTGGC
AGTCCCGTCCCGCGTCATCCTGCTCATATCCATACTCAGGCTGAATCTGG
TGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTT
ATACTAAACCGCCATACGCAATCAGGCAAGTCCCGAGTTTATCGGGTCAC
GCAATTGCGTACCAATGGCGTTCACTGCCGAGAGTCCGTCAGCACAGGGC
CAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTAGCAGGTCACCA
TGGACCAATTAATAAACGCCTCACTTTCTCACACCCACTTTTAATATTGG
TATGAAGTGATTATAGCATGTTGAAAGTAACGATGGGATGACAACACACA
CACACTCTTCGTAATAAGTATCATCGATCGCCCCTTGGGAGGATCAGTAC
GAGTGGTATAGAACGATTAGGATGACAGGGCCGGATTGCGCGGTTATGTG
CAATTTATTAAACACGCACACACACACACACACACAGGCTTAAGTAAGCA
TTGTACAAGTAGAGAGAGCGTGTCCCCTTTGTCGCGTCTGATCAGAGGTT
TTCGTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAAAGCGACTGGC
ATAGAATGGCTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTA
ATAAATACACACACACACACACACACACACACACACAGTCGCGTCTGATC
AGAGGTTTTCGTAATAAGTATCATTGATCCCCCCTTGGGAGGATCAGTGC
GAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGTCATGTC
CCATTTAATAAATACGCACACACACACCTCGTAATAAGGATCATTGATCA
TTGATCCCCCCTTAATACCCCTTGGGAGGATCAATGCGAGTAGCATAGAA
TGGCTAGGATGGCAGGGCCGAATTGCGCGGTTATGTCCAATTTAATAAAT
CCACACACACACACACACATTGATCCCCCCTCGGGAGGATCAATGCGAGT
GGCATAGAATGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAAT
TTAATATACACACACACACACACACACACACATAGTATCATTGATCCCCC
CTCGGGAGGATCAGTGCGAGTGGCATAGAATGACTATGATGACAGGGCCG
GATTGTGCGGTTATGTGCAATTTAATAAATACACACACACACACACACAC
ACATACACACACACCAGGTAAGATTATTTTGCAGCAATGCTTGTACCTTC
ACCTTCCGTCGACGTGCTTGTGCTACTGTACCGGCTGTAACAGTGGGTAT
ACTCCATGAGCATTGTGCCTACAGCTCTAGATCCGTCGCCGAAAACAGAG
AATAAGTTCGAACTAACTGTTTGCGCATTGATGCGGCATGTATGATGTAC
CATATGGTGTATGATATCGTTGACGAGCGAGAAGTCTTGTGTCCTCTGTT
TCACCGCCCAGATAACCTTACATTGCGAACCTGCTTCGAACGAGAGTCGT
GAAATGCTTGTCGATTGATACGTTATGATATCGTTGACGAGCAAGAAGTC
CGTGTCCCGGATTTCGCCGCCAAGATGACCGTCCGAACCTGCTTGAAACA
TTGGGGGTGAATCAATCCTGTCGCGTTGCTTGGCCCAGGCGATCGATGCG
TTGGCGCTGTGTGACGTCGATGGGCGCATGTTCTTGGAGATGGATGAGGA
GGATCTGGCGGAATCCGAAGAGCTTGGCCTCGATGTATGTATGTATTTAT
GTATGTATGTACATTATATATTTATGTCTCTTGGCCTCGATGTATGTATG
TATTTATGTATGTATGTATTATATAGTATGTCTCATTAATAGTGTTATCC
TGCAACAACTGCAGTCAACCACGCGATGTTTTCAGCTTCCTGTTGTACAA
TACTCGGTGTAGAGATTGAGTGGAGAAGTCATAGTCATATAAGTATTAAA
GACTCCTCCCTACAGAACCTGTAATGTTTAAAGAAAATCAGAACAGCACC
TAGACCTTTTGAGCATCCACCGGTTAGAGGGGGAAAAATGTCAAAACGTT
GTTTGTTTCAAAAACAAATTGAAGAAAATTGTTGTTTTCTCACATTCAGT
ATATTAAAAATTGCCAACCCGAAAAAATAAAAAAATAATTTACACGGTGG
CCGATTCCGCTCGTGGTCTGCTGAAAAAGGGAAAAATAATCAAATAAAAA
TTCTGGCAGCACAGCCCCCCCCCCCCCACGCTGCTCGTTATTAATATCAA
TATATTATTATTATTAGGAGAAAATGAGATGAAAATGACGTGACGCATCT
ATCTTCATGCCCAAATAGGCGCTACGCAGGTCGTGGTCCGTCTCATGCCC
GTACAGGATTCCTTCGGCTCGTCGACTAGGCCAATGGGTGTCGCTTTGCA
AAATTTACGCTTCCATGTGCGATAACTACGAGGTCTAGGCGCGTTCTGAT
TTTTCTTTAAACAACTTTCCCAGCCTGGTTGCCTCTCTCTTCTACTGGCG
ATGTCTGTGGTCTAGTAGGCAACCACGTGCACCTAAATACCTGGTAGTGC
GGAAGTAGTGAGTTCGATCCATGTGAAAACCAGAATTTTCTAATCTGGCT
TCCGTAGCGGAAAGCGTGAGAACGTGAGAACGTGAGTAACTAAAATTACA
AGCTTTCATTGGTTGACGAGGTCTAAGAGTAAGAGATGAACTTACATCGC
GAGAAAAAATCATAAGGCGAGAACCGGCGAGAGATGAAGAGATCCTTCGT
GACCACAGGCATTTAACAGGATGGATGATGGCGACGTTGCAGTAGGTGGG
AGTGGTAACCTACGACGTTGACATGCAAAAGTAGTAACGCGCAGGCCGTA
TCAATACAGTACTGTACAGTACAGGAGTTCAAGAGTTAATGATGTTCTTG
ATTTACGTGACGTACTGTGGCTGTACTGTACTGTACTGTACTGTACTGTA
CTGTGGCTGGAAGCGCGAGAGCGTGATAACCTTTTTCTTTCTCTCGATAT
AAATGATAAAAGTGTAGTACTGTAACATTAACATTAATATTAACATTAAT
ATTAAGAGATGTACATGGATCATCGGTGAGAGGGCTACTCGTACAGGGAA
ATATAGTGTAGATATCGACAGTACACTCTAGAGGTATATTCAATTGATAT
GATAGTGTAGTATAGTATAGTAAAAATAATGAGGTATACAGGCACAGGGA
GTGGATGCTGACATGTTGCACAAGGTTTCGCGGATCCTCTCACGAAGATG
TCTTAGCACACTCCTAGTAATAGTAATAGTAATAGTAATAGTAATAGTAA
TAGAGGTGATCTTACTGATTGATTGATTGATTGATTGATTAATTAAAGTC
TCACATAAGCTGATGTCAAAAGTCCAGCCCATGGTCACAAGGTAGAAAAA
CACCATTCGGAAGGAGAGTACGTCGCGACGTACTCTATACTGTATACAAA
GAGAAAACGGAAATGGCACCAAAAAAAAATACTCGGAAAAAGCGTCATCT
CCAAAAAAAACAAAAAAACGTGTGGCTATCGGGGCGCCTGCATATCGAAG
GACGATTGAACGGCGGGCCGCGGCTTCAAAGCAAGCATAAAGCGAAAACG
AAGCAGAACAAAACAAGCGTAACACCAGAGAAAGACGTCATGACATGTAC
AAACCAAACGCCCAGAGGATACAAATTCGCGCCACTTGTGGCCAGTCAAC
AAGGGTGAGCGAACCAGCACGAGCCTAACTACATAAAATTATTACTGTAT
TATTATAGTGATACGACCTTTTACAAGGTCACCGGGCCTTCGGCGTTCAC
CACATCACTGGATTATGCTTGTTGTTTCCACCGATCGTTCATAGTACAGC
TAATGCCTAATACAAGCCATAGTCTACACGACGTACCAATAATGGACAGC
GCAGCGCAGCACGGATGCCTTCGTCCCGGGACGAGATGATGCTGCTGATG
GTGATGCTGAGATGCGATGCTGCTGCTCCTGACACGAAGTACTCCTTGTC
CGCACAGCACTATTACTAATAATGTTATCCATAATGAATAGTGAAAACCA
GTGTTTGTGTGTGTATGTGTGTTGTCATTCCATTTATTCTGGATGTCGGG
CTTGTGGACGTACTGTACTGTACCAGCCGGGGTCACAGAGGAGGAAGGTC
ACACAGGATTTCTCATTCATCTTTCTTTTGCGATGCTTGCCTTAATTTTT
CTCGCGAGAAGGATTGGATTCAGCTGTTCCTTTCCCTCCTCGACCGTGAA
GTATATCGAATTTTGTGTACTACAGTAGCGAATTAATCGTTCTCCCTTTG
TTGGGCATGATTTATTTATTTCATTTTTTTGTGAGGAAAAATTCCAGTTC
GTGTGACTGCACCGGGATTCGGACTCGCGTCCCAACGTCAGAAGGTTTCG
AGGTAACCAACCGAACCACCGGGGCGACCAGTCAGTGCCCTACACTACAG
TACATTACACTACGCTACACCGCTCCATTGTATTGCGGTTTTAATAGAGG
CGTCTACGAGTACAGAGTTTGATCTCTCCGGCGCTAACTGCGGCCCTCGA
CTTTAATACACTTATTTTAAAGTGTTTCAAAGCGGGAATCGCTGGGAGCC
CGGTTTCAGCGTTTTTGACTCAATGAAATGAGTACTGGCGCTGTACTTGT
ACGCAAAATGCGCCTGGGGCGTTGTTGCGATGCCTTGACTCTGGTTGCAA
GTGTCGAAACTCCACGCCAGATGACCAATCAGATTGAAAGAGTCCCCCCG
GCGGGGCGAAACGGCACTTAACTCTTAACTCTACTCGCCTGGAGGCGCCA
ATCATAGTGCAAGGTGCGGTAACTTAAAATATAACTACTGTACCGTACAG
TAGAAAGTAGAATTTGCGTTTTTCACTGCTGAAGGTCTTCCGTCTAGAGG
GTACCGGGGATTTCGTCTGTACCTGAGAAAAATCATTAAAACAGTAAGGT
CAGCTGACCATCAGGTTGACTACTCTTGTCTCAATCTAAAAAATATCCAA
ATGTAGACTATAATTCGACGTTTTTGCCCCAGCGACGGTGCGTTTCTACA
ACTCTCTCCATGTACAACCTTACTATATATTGGGGGGCTTCATCTCTAAT
ATAACTTTATTCCTCTATAATATATTTTCCATATGAAGTATTGTATTATA
CAGTACATGCGTAGCCTCAGACGCGTTTCACGAGCACGCCATGCGAGCTT
TTGTATGCAACGCTTTGCTTGCCTGGAGTGATGCTTCTCCATTTTTTTAC
TCATCAAATTTAGCATAATAATATTATGTCACCAGGGGGGGTTTTCTCAA
TGTCGGAATTTTCTCCAAACGGTAATATGACAAGCAAGATTGGCAACTTC
TTCGTGATCAACAAACCACGTAAAAGAAACGAAAACGCCTCCTTACACAC
GGCCCGTCCTCGACCTCTGCCTTACTTCCCGTTCCCTCAGATGAAGAGCA
TCCACGACGTTCTACAACTCCAGGCCGATTTAGAAGCGCTGGAAGTCTCT
CATCACAATCAAAACCATCCAGCGGACGCTTCCACAAATGACCCAAGGCC
GGAGGGGCGAGAAAGCACCGCACCTCAAGAACCAGATGGCCCCCGAGAGA
CGTCGTCCTGCTCGTCGTCGTGGACGCTGCCCTGCGTATCTGTTGACAAG
GATGGAAACAGCTATTTTGCGGAGAAGACCGTGAGGCTAGGCGCGGGCAC
GGGTGCGGGGATCGGAGCGCTGTCGGCGCTGATCCCGACGGCAGGTGAAT
ATCAGTAATCTCCGATCCTGGTCCTGCGACAGACTGGCGTACGGAGTACC
TGGTATTTAAAGGATCCGCGTCTGAAAAACTCAAGACAACACTTTCTCCC
ACAAAACTACCTCCTAAAGGCAATACACGGGACAGGGTGTCGCGGTGGAA
GCGCAGTATTAATATGAAGGACCCACCCGGGCCATATTTCCTTCCGTCAT
CCATGAGATGCGAAAGCTCGATATCCCAACGCAGTTCGGTTCGGTTCTGT
TCGGCTTTGTTTAGTTGTTTCCCTGTTGATGTCGCTGTGCCCCCACTTCG
ACAGGTCTCAAGTTTCGGGAAACTCCGGGTGATTACGACTTCGACTTTCA
CACGGCCCCGGCGAGGCAGCTCATCGTCAGCCTCGACGCGGCGGTGGATA
TTGAGGTCACAGACGGAACGCGAAAGGTTTTCCAGCCGGGAACTGTAATG
CTCGCCGAGGATACTTGGGGCAAGGTACTGTTTGAATGGCAATATTCGCA
AGAGTTAGGCCCGATCTTATGCGAGGTCGAAAACGCAGATCGAAAACAAC
GAAAAACGGCGTTTTTTCGATCTGAATTTTTCGATCAGAATAAAAAGCTA
TCTTATCTTAAGAAAAGCTATACTATATTTTTTACTGATCGAAAAATCCA
GATCGAAAAACGCCGTTTTTCGTTTTCGATCTCGCATAAGATCGGGGGCC
TAAAGCAATCTCAGCTGAAATATAACGGTCACTTCCAGCGACGCAGAACA
TGGAACAAATAAAAACCGCACAAACACATGGGTGGTGAGTTACCTAATAT
TTTTTCCCTCCGCGGTTGCCCGCTGTTTTTTCCGCTCCCTATGGTCCCTT
TGCGCATGCCACATTGGACGTTGGGGCGTGATAGGGTCATCGGTCACGAG
CCGTCGACGGAAAGCCAAGAAAATCGTTGTTTATTGTCCTACCCGACGAC
TTCAAATTGTGACGTAAACTTTTCGTGAAACAAGTACTGTCGAATAATTA
TCCGAAGGAACGTCTAGGGGATGTTGGTTTGAGTATTCTCCTCGCGAAAG
CTATGCCACCAATTAAAACGGTTCTTTTTATTTGACTTGCTGGGCTCTTC
GGGGATAGGACGATTTCGTAGTTAAGCTCTTAAGGTTGTGTGTGGGGGGG
TTTTGTCATCCCATTTATTCTGGACGTCAGGTCTGTGGACATACCGGCCA
GGATTACGCACGAGGGAGGTCATACAAGATTTCTCGACCTTCCTTCTGCG
GCGCTTACCTTGATTTTTCTCGCGAGAAGGATTCAGCCGTTCCTTTCCCT
CGTCGACCGTGAAGTCGATTTTCGTGTACTAACGATTTAATCATTCTCCA
CTTGTGAGGAAATATCCCAGTTTGTGTAACGGCACCGAGATTCGAACTCA
CGTCCCAGCTTCTGAAGGTTTCGAGGTCACCAACTGAACCAACCACCGGG
GCGAGTTACAGATTTGTGACCCATGGTGGGAAATGAAATATATTTGACAC
GTCGTCCGATCATACACACAGCTTTCGCGATACTTGCGTATCGCAAATTT
CCTCTGTACCCAAATTGATGGGAGTGTGACCTTGATGGTGTAGGAACCAG
ATTTACAGTAGACTGATAGACG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig75:82412..92683-

>mRNA_F-serratus_M_contig75.18743.1 ID=mRNA_F-serratus_M_contig75.18743.1|Name=mRNA_F-serratus_M_contig75.18743.1|organism=Fucus serratus male|type=CDS|length=1470bp|location=Sequence derived from alignment at F-serratus_M_contig75:82412..92683- (Fucus serratus male)
ATGGCCAAACTTGGGGAACCTCCATCGGAATGGTCTGCATCAAAGCTGAG
TGGGTGGCTTGCTGAAGGCCGGAAGCTCGACCCTGATATGGCCAAACTTG
GGGAACCTCCATCGGAATGGTCTGCATCAAAGCTGAGTGGGTGGCTTGCT
GAAGGCCGGAAGCTCGACCCTGATGCGATCGATGCGTTGGCGCTGTGTGA
CGTCGATGGGCGCATGTTCTTGGAGATGGATGAGGAGGATCTGGCGGAAT
CCGAAGAGCTTGGCCTCGATGCGATCGATGCGTTGGCGCTGTGTGACGTC
GATGGGCGCATGTTCTTGGAGATGGATGAGGAGGATCTGGCGGAATCCGA
AGAGCTTGGCCTCGATATGAAGAGCATCCACGACGTTCTACAACTCCAGG
CCGATTTAGAAGCGCTGGAAGTCTCTCATCACAATCAAAACCATCCAGCG
GACGCTTCCACAAATGACCCAAGGCCGGAGGGGCGAGAAAGCACCGCACC
TCAAGAACCAGATGGCCCCCGAGAGACGTCGTCCTGCTCGTCGTCGTGGA
CGCTGCCCTGCGTATCTGTTGACAAGGATGGAAACAGCTATTTTGCGGAG
AAGACCGTGAGGCTAGGCGCGGGCACGGGTGCGGGGATCGGAGCGCTGTC
GGCGCTGATCCCGACGGCAGATGAAGAGCATCCACGACGTTCTACAACTC
CAGGCCGATTTAGAAGCGCTGGAAGTCTCTCATCACAATCAAAACCATCC
AGCGGACGCTTCCACAAATGACCCAAGGCCGGAGGGGCGAGAAAGCACCG
CACCTCAAGAACCAGATGGCCCCCGAGAGACGTCGTCCTGCTCGTCGTCG
TGGACGCTGCCCTGCGTATCTGTTGACAAGGATGGAAACAGCTATTTTGC
GGAGAAGACCGTGAGGCTAGGCGCGGGCACGGGTGCGGGGATCGGAGCGC
TGTCGGCGCTGATCCCGACGGCAGGTCTCAAGTTTCGGGAAACTCCGGGT
GATTACGACTTCGACTTTCACACGGCCCCGGCGAGGCAGCTCATCGTCAG
CCTCGACGCGGCGGTGGATATTGAGGTCACAGACGGAACGCGAAAGGTTT
TCCAGCCGGGAACTGTAATGCTCGCCGAGGATACTTGGGGCAAGGTCTCA
AGTTTCGGGAAACTCCGGGTGATTACGACTTCGACTTTCACACGGCCCCG
GCGAGGCAGCTCATCGTCAGCCTCGACGCGGCGGTGGATATTGAGGTCAC
AGACGGAACGCGAAAGGTTTTCCAGCCGGGAACTGTAATGCTCGCCGAGG
ATACTTGGGGCAAGGGTCATCGGTCACGAGCCGTCGACGGAAAGCCAAGA
AAATCGTTGTTTATTGTCCTACCCGACGACTTCAAATTGTGAGGTCATCG
GTCACGAGCCGTCGACGGAAAGCCAAGAAAATCGTTGTTTATTGTCCTAC
CCGACGACTTCAAATTGTGA
back to top