mRNA_F-serratus_M_contig742.18684.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig742.18684.1
Unique NamemRNA_F-serratus_M_contig742.18684.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.870e-81
Identity = 168/367 (45.78%), Postives = 215/367 (58.58%), Query Frame = 1
Query:    7 LCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGT-SKMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLC-WPTVDKKSFASLSAFQRVPYLV 1101
            L G G V+ N+QAV AS AMA PK+   GY LV+DF   N Q E VPG M N E    + + A  + ++D LQ Y QC LA +A E    +T  GL+TP R PQG++N TSY Q  +  +L  L      + VDDV  +G    +L+  L  +L R    GL++AA K   F      CGK+Y    V HDPER+ GL  MRRPET GELM+FLQ  NW   SLP+MAEVV PLR  ++  L G  S+ KRVA  R I     TP  VE W  ++D+   AV LS   P  C VLMFPDASD   G  LTQ P  +L  G+   +++HEP+ FLSG F+G+Q   W TVDK+ +A +S F+R+ YL+
Sbjct:  783 LAGLGLVFLNMQAVWASAAMATPKKG--GYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGL---NCFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPG-CAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQRWATVDKEGYAIVSTFKRLEYLL 1143          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 2.480e-81
Identity = 162/368 (44.02%), Postives = 215/368 (58.42%), Query Frame = 1
Query:    7 LCGTGTVYPNLQAVCASVAMAFPKRQCKG--YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGT-SKMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            L   G VY NLQA+ AS  M  PKR      Y  V DF  +N Q E  PGPM + E + ++ + A  + ++D LQGY    LA +A E        GL++P R PQGV+N TSY QG M  +L +L      + VDD+  +G +  +L+  L  +L R    GLF+AA K   +    K CGK+Y    + HD +R+ GL  +RRPET GELM+FLQ  NW   SLP+M+E+VAPLR  ++  + G  ++ KRVAS R I    WTP  VE W+ ++DM  NAV L +       VLMFPDASD   G  +TQ P  E+   +   ++SHEPL FLSG FRGSQL W TVDK+ FA +S F+R+ YL+
Sbjct:  681 LVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDL---NCIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTL-YHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLL 1044          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 1.640e-62
Identity = 146/368 (39.67%), Postives = 197/368 (53.53%), Query Frame = 1
Query:    7 LCGTGTVYPNLQAVCASVAMAFPKRQCKG----YNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKM-KRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPY 1095
            L   G V   +QAV AS AM  PK    G    Y L  D+L  N QCE VP  + + E +     GA  F  +D LQGY Q  LAE A E    +T +GLF P R PQ V+N T Y Q +M E+L  L     ++ VDD   +G    +L+  L  +L R  + G+F AA K   F  + + CGK+Y G  V  DPER++GL  MRRPET G+LM+FLQ   W   SL ++AEV+ P+R  ++  +    +  K +A  R I    WT   VE W +++D+  +AV LS  + D   VLMFPDAS+   G  LTQ P +EL  G+S  +++HEPLAFLS   R      P+    +  S    +RV +
Sbjct:  430 LVAMGMVVKTIQAVWASPAMTVPKPGRVGREGEYRLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGL---NCAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPK-DGFAVLMFPDASEEHWGSFLTQVPQEELERGVSVEHMTHEPLAFLSVKVRAVAGFAPSKPDDTMPSKEVIRRVQH 793          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6G0WPP4_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPP4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.150e-45
Identity = 115/364 (31.59%), Postives = 180/364 (49.45%), Query Frame = 1
Query:   19 GTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKRVASRRV-ITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGP--NKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            G VY N ++  A+     PK+      +  D  PIN   E +P PM N E        +  + T+D ++GY Q  L  ++ E   F    G+ TP R   G  +  +Y QG++ E+ G ++       +DD+  + R+ ++L+  L+ ML  C   GL L  +K   +  +   CGK      V H P RV+GL  +  P+T  EL +FL   NW   ++P+ + +VAPL   +    K  +  K+ A  RV ++   W  +  E +++ +      V L+   P+   V ++ DASD F G   TQ P  + ELVA        HEPLAFLSG FRG+   WP V+K++FA + + +R+ YL+
Sbjct:  733 GLVYRNTRSRWAAAPRIVPKKDPGDLRMTIDSRPINACTEPMPWPMPNLEVAMAVLRDSKVYFTLDWMKGYWQLPLHPESQEYYSFMMPIGVVTPTRVLMGQSDAVAYCQGVVDELFGEMIMHGLLGWLDDLLGYARTASDLMDLLKRMLAICQAYGLKLHPKKCAFYTTKTIWCGKEVSAEGVAHAPARVQGLCELEPPQTAAELQQFLCATNWMRANIPEYSALVAPLTKLLDIGAKAAASRKKTALARVSLSSIGWCEDHAECFESVKTTLQRMVPLAHPDPEKM-VCLYTDASDGFWGAIATQVPLDDLELVASEQ----RHEPLAFLSGAFRGASERWPIVEKEAFAVVESCKRLEYLL 1091          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6A4ZJ35_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZJ35_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.950e-45
Identity = 116/362 (32.04%), Postives = 175/362 (48.34%), Query Frame = 1
Query:   19 GTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKRVASRRV-ITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            G VY N ++  A+     PK+      +  D  PIN   E +P PM N +        +  + ++D  +GY Q  L   + E   F T  G+ TP R   G  +  +Y QG++ E+ G+L+       +DD+  +  +  EL+  LR +L  C   GL L   K   +      CGK      V H P RV+GL  +  P+T  +L +FL   NW   ++PQ  E+VAPL   M    K     K+ A  RV ++   W  + +  ++  +      V LS   PD   V ++ DAS+ F G   TQ P+++L   L   +  HEPLAFLSG FRGS   WP V+K++FA + + +R+ YL+
Sbjct:  377 GLVYRNTRSRWAAAPRIVPKKDPGDLRMTIDSRPINACTEPMPWPMPNLDVAMGVLKDSRVYFSLDWTKGYWQLPLHPDSQEYYSFMTPVGVVTPTRVLMGQSDAVAYCQGVVDELFGDLLMHGVLGWLDDLLGYAGTTTELLQLLRQVLGICHISGLKLHPGKCTFYTTRTIWCGKEISAEGVAHSPSRVQGLCGLEPPQTAADLQQFLCATNWMRANIPQYTELVAPLTRLMDIAAKAADSRKKTALTRVALSSVGWAEDHLTCFERVKATLQRMVPLSHPDPDKM-VCLYTDASEGFWGAVATQVPSEDLA--LPANDQRHEPLAFLSGAFRGSSERWPIVEKEAFAVVESCKRLEYLL 735          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6G0WN36_9STRA (RNA-directed DNA polymerase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN36_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.010e-41
Identity = 116/369 (31.44%), Postives = 180/369 (48.78%), Query Frame = 1
Query:    1 ELLCGTGTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTS--KMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            E LC  G +Y N  +  AS      K     Y +  D   +N + E V  PM   E   E  AG+  F  +D  +GY Q  L     +     T  G+   +       +   Y+Q  +++VL         + +DD+ V+ ++ ++L+     +L  C E GL L   K   FA E K CGKL  G+ V HDP R+  L  M  P T  +LM+FL   NW    +P+  EVVAPL  +++ R+   S  K K+   + V+    ++      +D+ ++   ++V+L+   P    V +FPDAS  F G  +TQ P  +L   LS  +  HEPLAFLSG FRGSQ+ W  ++K++F+ +   +R+ +L+
Sbjct:  503 EELCEAGLMYRNDSSAWASPPYIVAKPGTNKYRMTVDVRSVNSRTEPVQWPMPVIEVVMENLAGSTCFVALDFFKGYWQFPLDPSCCDLYTIMTDLGICRLLSS-----HSDKYVQVTIIQVL--------LVWIDDLLVYAKTHSDLMNCFEEVLSICSETGLKLNPDKCEFFATELKWCGKLVSGSGVRHDPGRIAALQSMSLPRTGADLMQFLCAVNWMRSHIPRYNEVVAPLMAALQ-RVYSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKM-VCVFPDASLRFWGAIVTQVPMNQL--SLSIDSQDHEPLAFLSGPFRGSQMAWSIIEKEAFSIVETCKRMDFLL 854          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6A5AIE2_9STRA (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AIE2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.460e-41
Identity = 113/362 (31.22%), Postives = 170/362 (46.96%), Query Frame = 1
Query:   19 GTVYPNLQAVCASVAMAFPKRQCKGYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKRVASRRV-ITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            G VY N ++  AS     PK+      +  D  PIN   E +P PM N E       G+  +  +D ++G   C                    P R   G  +  +Y QG++ E  G+L+       +DD+  + ++  EL+  LR +L  C   GL L   K V +      CGK      V H PER++GL  +  P+T  +L +FL   NW   ++PQ  E+VAPL   +    K     K+ A  RV ++   W+ + +E +D  ++     V LS   PD   V ++ DAS+ F G   TQ P ++L    S     HEPLAFLSG FRG+   WP V+K++FA + + +R+ YL+
Sbjct:   96 GLVYRNTRSRWASAPRIVPKKDPGDLRMTIDSRPINACTEPMPWPMPNLEVAMVVLKGSKVYFKLDWMKG--GCD-------------------PTRVLMGQTDAVAYCQGVVDEFFGDLLMHGLLGWLDDLLGYAQTTDELLHLLRKVLEICHAYGLKLHPGKCVFYTTRTVWCGKEISADGVAHAPERIQGLCDLGPPQTAADLQQFLCATNWMRGNIPQYTELVAPLTKLLDIAAKAADSRKKTALTRVALSSVGWSGDHLECFDRIKETLKRMVPLSHPDPDKM-VCLYTDASEGFWGAVATQVPVEDLALPASDQR--HEPLAFLSGSFRGASGRWPIVEKEAFAVVESCKRLEYLL 433          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A2P4X8V4_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8V4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.900e-37
Identity = 108/339 (31.86%), Postives = 159/339 (46.90%), Query Frame = 1
Query:   94 YNLVADFLPINGQCELVPGPMRNSETEGEKYA---GAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            + L  D+ P+N Q   V   M    T+GE      GA  +      +G+ Q  L E + E   F T DG+F+P+R PQGV +   + Q  M  VL  ++ R     +DD+ +F + +   +  L+         GL L   K  LF  E K CG+L  G  + HDP RV  L  +  P TV EL  F+ VANW   SLP  A VVAPL+  ++      +K+ R +   +     W     E +D    +  ++  ++F   DDC V +F DAS       LTQ P  E    L+     H  +    G+FR SQL WP +DK+++  + A Q + Y++
Sbjct:  466 FRLTIDYRPVNAQTVPVADRM---PTQGEVIGAVRGAKHYARFHLPEGFWQFPLHEDSQEIFSFLTPDGVFSPLRVPQGVTDSALHFQAQMQTVLAPMIPRNVICWIDDILIFAKDMDSFLDALQEFFDIVGGHGLRLHPSKSSLFESEVKWCGRLISGDGIRHDPARVEALTTLPLPSTVAELQYFVCVANWLHESLPDFARVVAPLQDKLQSE---RNKLGRRSRNALNVALQWAGVEEEAFDEVIALIRDSALMTFP-DDDCEVCLFVDASQEGYAIILTQVP--EWNDTLTVEEQDHRLIVCKGGLFRESQLRWPIIDKEAYPIVKACQNLCYVL 795          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A6G0QQ04_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ04_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.320e-37
Identity = 103/330 (31.21%), Postives = 160/330 (48.48%), Query Frame = 1
Query:  124 NGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQM----AEVVAPLRPSMKPRLKGTSKMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            N + E +P PM   E    +  GA  F  +D  +G  Q  L   + E   F T  G++TP R P G  +  +Y QG++ E+LG+L+G      + D+  +      L+  L  +L RC E GL L A+K   FA E   CGKL     V H PERV+GL+ +    T GEL +F+    W    +P+      ++ A L  +M   +   S+ K+  +R ++    W+       +  RD  +N + L+   P    V ++ DAS  + G  +TQ    +L   L   N  H PL FLSG F G+   W T++ ++FAS+ + +R+ YL+
Sbjct:  244 NERTEAMPWPMPVLEVVIGELEGAHVFFVLDWFRGDCQLPLHPDSQEYFTFVTHRGMYTPTRVPTGATDAVAYCQGVVEEILGDLLGNGILCWLGDILGYAADATALMELLDKVLARCEEYGLKLLAKKCQFFATEVMWCGKLISAQGVMHCPERVQGLIGIPLSRTAGELQQFICAITWMRRGIPEYNRPTGDLYAVLERAM---ILAGSRKKQKLNRFLLIDAGWSERDTACLNAVRDALLNMLPLAHPSPT-AEVCLYADASQAYWGAVVTQIDPSKLQLPLEKQN--HRPLDFLSGRFAGASSRWATIEMEAFASVESTRRLEYLL 567          
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Match: A0A2P4XNQ9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNQ9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 8.990e-36
Identity = 105/362 (29.01%), Postives = 171/362 (47.24%), Query Frame = 1
Query:   19 GTVYPNLQAVCASVAMAFPKRQCK-GYNLVADFLPINGQCELVPGPMRNSETEGEKYAGAVAFCTMDCLQGY*QCSLAEKASE*VIFSTGDGLFTPMRGPQGVMNITSYLQGMMMEVLGNLVGRADSICVDDVKVFGRSVAELIVNLRAMLLRCMERGLFLAAQKLVLFAKEAKRCGKLYMGTAVGHDPERVRGLV*MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKRVASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDASDLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKKSFASLSAFQRVPYLV 1101
            G +  N  +  AS A+   K   K G+ +   ++ +N +   + G M +        AG       D  +G+ Q  LAE+  E   F T DG++TP+R PQG  +   + Q  M  V   L+ +   + +DDV V+G++  E + NL+       E  L L A+K VL + E   CG++  G  +  DP+R+ GLV +  P+T  +L +FL V NW   S+     +  PL+  +   L   SK KR AS   ++   WT E    + +      NA +L F   +   V +  DASD      LTQ   ++    ++  +  HE L    G+FRG+Q+ W  V+K+++  + A   + Y++
Sbjct:  449 GFIKKNNLSKWASNAVPVRKSDDKTGFRVTNAYIDVNKRTVPIAGTMPHLSVVLSFVAGVKFIAKFDMFKGFWQIMLAEECQEIFSFMTHDGVYTPLRVPQGATDSALHFQNQMQTVYKPLLYKGALVWIDDVIVYGKTEEEFLANLKLFYELTAEYRLKLNAKKSVLMSFEVSWCGRIIDGEGIRQDPQRLSGLVSLPLPKTAADLQRFLCVCNWIRDSIVDFVRIFEPLQSKINGVLVNRSKTKRSASAVALS---WTEEERANYSHVLQFIANAAKLYFPE-EQTTVCLMTDASDHGYAIILTQV--RKWQEQVAVEDQKHELLICQGGIFRGAQIRWSVVEKEAYPVVKACVSLDYIL 804          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig742.18684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.870e-8145.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE2.480e-8144.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE1.640e-6239.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0WPP4_9STRA4.150e-4531.59Reverse transcriptase domain-containing protein n=... [more]
A0A6A4ZJ35_9STRA6.950e-4532.04Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]
A0A6G0WN36_9STRA3.010e-4131.44RNA-directed DNA polymerase n=2 Tax=Aphanomyces eu... [more]
A0A6A5AIE2_9STRA9.460e-4131.22RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A2P4X8V4_9STRA1.900e-3731.86RNA-directed DNA polymerase (Fragment) n=1 Tax=Phy... [more]
A0A6G0QQ04_9STRA3.320e-3731.21Integrase catalytic domain-containing protein n=5 ... [more]
A0A2P4XNQ9_9STRA8.990e-3629.01Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig742contigF-serratus_M_contig742:123441..124544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue9.7e-14
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1104
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.0981376-UTR-F-serratus_M_contig742:123440..1240461622932248.0981376-UTR-F-serratus_M_contig742:123440..124046Fucus serratus maleUTRF-serratus_M_contig742 123441..124046 +
1690964217.218799-UTR-F-serratus_M_contig742:123440..1240461690964217.218799-UTR-F-serratus_M_contig742:123440..124046Fucus serratus maleUTRF-serratus_M_contig742 123441..124046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932248.1158698-CDS-F-serratus_M_contig742:124046..1245441622932248.1158698-CDS-F-serratus_M_contig742:124046..124544Fucus serratus maleCDSF-serratus_M_contig742 124047..124544 +
1690964217.2369862-CDS-F-serratus_M_contig742:124046..1245441690964217.2369862-CDS-F-serratus_M_contig742:124046..124544Fucus serratus maleCDSF-serratus_M_contig742 124047..124544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig742.18684.1prot_F-serratus_M_contig742.18684.1Fucus serratus malepolypeptideF-serratus_M_contig742 124047..124544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig742.18684.1

>prot_F-serratus_M_contig742.18684.1 ID=prot_F-serratus_M_contig742.18684.1|Name=mRNA_F-serratus_M_contig742.18684.1|organism=Fucus serratus male|type=polypeptide|length=166bp
MRRPETVGELMKFLQVANWTSLSLPQMAEVVAPLRPSMKPRLKGTSKMKR
VASRRVITGGDWTPERVEVWDNSRDMWMNAVELSFRRPDDCRVLMFPDAS
DLFCGCCLTQGPNKELVAGLSFMNISHEPLAFLSGVFRGSQLCWPTVDKK
SFASLSAFQRVPYLV*
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mRNA from alignment at F-serratus_M_contig742:123441..124544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig742.18684.1 ID=mRNA_F-serratus_M_contig742.18684.1|Name=mRNA_F-serratus_M_contig742.18684.1|organism=Fucus serratus male|type=mRNA|length=1104bp|location=Sequence derived from alignment at F-serratus_M_contig742:123441..124544+ (Fucus serratus male)
GAGTTGCTCTGTGGGACAGGGACGGTGTACCCGAATCTGCAGGCGGTTTG TGCAAGTGTGGCGATGGCGTTTCCCAAGAGACAATGCAAGGGATACAATT TGGTGGCTGATTTTCTCCCCATCAACGGCCAGTGCGAGTTGGTGCCGGGG CCGATGCGGAATTCTGAGACTGAGGGAGAAAAATATGCTGGCGCCGTGGC TTTTTGTACTATGGACTGCCTTCAAGGTTACTAGCAGTGCTCGCTGGCGG AGAAGGCGAGTGAGTAAGTCATATTTTCGACTGGGGATGGCCTGTTCACG CCGATGCGTGGGCCGCAGGGAGTCATGAATATTACGTCATACTTACAGGG GATGATGATGGAGGTCTTGGGAAATCTAGTGGGGCGTGCCGATTCGATTT GTGTGGATGACGTGAAGGTTTTCGGGCGATCCGTGGCGGAGCTGATAGTG AATCTGCGTGCGATGCTGCTGCGGTGTATGGAGCGTGGTTTGTTTCTTGC GGCGCAAAAGCTTGTCCTGTTTGCCAAAGAGGCAAAACGGTGCGGCAAGC TTTATATGGGGACAGCCGTCGGACACGACCCAGAGCGCGTGCGTGGACTG GTGTAGATGCGCCGACCAGAGACGGTGGGCGAGCTGATGAAGTTTCTGCA GGTGGCGAATTGGACGAGTTTGTCACTGCCTCAAATGGCGGAAGTTGTGG CACCGCTGCGACCGTCGATGAAACCTCGGCTGAAGGGAACGAGTAAAATG AAAAGAGTGGCGTCGCGGCGGGTTATAACGGGTGGGGATTGGACGCCAGA GCGAGTGGAAGTCTGGGACAACTCCCGCGATATGTGGATGAACGCGGTAG AGTTGAGCTTCCGGCGGCCGGACGACTGCCGCGTGTTGATGTTCCCGGAT GCGAGCGATCTTTTTTGTGGGTGTTGCTTGACGCAGGGGCCGAATAAGGA GCTAGTGGCAGGGTTATCTTTCATGAACATCAGTCACGAGCCCCTCGCTT TCCTGAGTGGTGTGTTTCGGGGATCACAGCTATGTTGGCCCACGGTGGAC AAGAAATCTTTCGCAAGTTTGAGCGCTTTTCAGCGCGTGCCTTACCTGGT GTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig742:123441..124544+

>mRNA_F-serratus_M_contig742.18684.1 ID=mRNA_F-serratus_M_contig742.18684.1|Name=mRNA_F-serratus_M_contig742.18684.1|organism=Fucus serratus male|type=CDS|length=996bp|location=Sequence derived from alignment at F-serratus_M_contig742:123441..124544+ (Fucus serratus male)
ATGCGCCGACCAGAGACGGTGGGCGAGCTGATGAAGTTTCTGCAGGTGGC
GAATTGGACGAGTTTGTCACTGCCTCAAATGGCGGAAGTTGTGGCACCGC
TGCGACCGTCGATGAAACCTCGGCTGAAGGGAACGAGTAAAATGAAAAGA
GTGGCGTCGCGGCGGGTTATAACGGGTGGGGATTGGACGCCAGAGCGAGT
GGAAGTCTGGGACAACTCCCGCGATATGTGGATGAACGCGGTAGAGTTGA
GCTTCCGGCGGCCGGACGACTGCCGCGTGTTGATGTTCCCGGATGCGAGC
GATCTTTTTTGTGGGTGTTGCTTGACGCAGGGGCCGAATAAGGAGCTAGT
GGCAGGGTTATCTTTCATGAACATCAGTCACGAGCCCCTCGCTTTCCTGA
GTGGTGTGTTTCGGGGATCACAGCTATGTTGGCCCACGGTGGACAAGAAA
TCTTTCGCAAGTTTGAGCGCTTTTCAGCGCGTGCCTTACCTGGTGTAGAT
GCGCCGACCAGAGACGGTGGGCGAGCTGATGAAGTTTCTGCAGGTGGCGA
ATTGGACGAGTTTGTCACTGCCTCAAATGGCGGAAGTTGTGGCACCGCTG
CGACCGTCGATGAAACCTCGGCTGAAGGGAACGAGTAAAATGAAAAGAGT
GGCGTCGCGGCGGGTTATAACGGGTGGGGATTGGACGCCAGAGCGAGTGG
AAGTCTGGGACAACTCCCGCGATATGTGGATGAACGCGGTAGAGTTGAGC
TTCCGGCGGCCGGACGACTGCCGCGTGTTGATGTTCCCGGATGCGAGCGA
TCTTTTTTGTGGGTGTTGCTTGACGCAGGGGCCGAATAAGGAGCTAGTGG
CAGGGTTATCTTTCATGAACATCAGTCACGAGCCCCTCGCTTTCCTGAGT
GGTGTGTTTCGGGGATCACAGCTATGTTGGCCCACGGTGGACAAGAAATC
TTTCGCAAGTTTGAGCGCTTTTCAGCGCGTGCCTTACCTGGTGTAG
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