mRNA_F-serratus_M_contig740.18663.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig740.18663.1
Unique NamemRNA_F-serratus_M_contig740.18663.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig740.18663.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.040e-11
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:  280 RRPSLAELKQPLETIFETPVGSPGSSVDSEEEYESLHAGLDEIHLGEYFGHFRHNEIRLESLEHLTEEDLMEIGLPVGARKTFLVEVHGIPSARKEP 570
            R+   + +  P  T          S  DS+  Y+SL   L ++ L +YF  FR  E+RLE L+HLTE DL E+G+PVG RK  LVEVHGI +  + P
Sbjct: 3033 RKGRYSTISTPNATXXXXXXXXXRSGSDSDAAYDSLRGVLGKVSLSKYFKEFRRREVRLEDLQHLTEGDLTEMGMPVGPRKRLLVEVHGITTPVRTP 3129
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig740.18663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE3.040e-1142.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig740contigF-serratus_M_contig740:282229..284149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1034
Cds size1032
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig740.18663.1prot_F-serratus_M_contig740.18663.1Fucus serratus malepolypeptideF-serratus_M_contig740 282229..284149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932243.6877427-CDS-F-serratus_M_contig740:282228..2825401622932243.6877427-CDS-F-serratus_M_contig740:282228..282540Fucus serratus maleCDSF-serratus_M_contig740 282229..282540 +
1690964215.4786692-CDS-F-serratus_M_contig740:282228..2825401690964215.4786692-CDS-F-serratus_M_contig740:282228..282540Fucus serratus maleCDSF-serratus_M_contig740 282229..282540 +
1622932243.7095969-CDS-F-serratus_M_contig740:283186..2833691622932243.7095969-CDS-F-serratus_M_contig740:283186..283369Fucus serratus maleCDSF-serratus_M_contig740 283187..283369 +
1690964215.4931068-CDS-F-serratus_M_contig740:283186..2833691690964215.4931068-CDS-F-serratus_M_contig740:283186..283369Fucus serratus maleCDSF-serratus_M_contig740 283187..283369 +
1622932243.728685-CDS-F-serratus_M_contig740:283612..2841491622932243.728685-CDS-F-serratus_M_contig740:283612..284149Fucus serratus maleCDSF-serratus_M_contig740 283613..284149 +
1690964215.507996-CDS-F-serratus_M_contig740:283612..2841491690964215.507996-CDS-F-serratus_M_contig740:283612..284149Fucus serratus maleCDSF-serratus_M_contig740 283613..284149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig740.18663.1

>prot_F-serratus_M_contig740.18663.1 ID=prot_F-serratus_M_contig740.18663.1|Name=mRNA_F-serratus_M_contig740.18663.1|organism=Fucus serratus male|type=polypeptide|length=344bp
MLPGAEDVENEGDDVVGRTRPSIFGQTELHAPETDPSGASEEGYDARSDR
GPSSSASSLRGKQEDLVAGWPGGSDVATVDGRLGFTRSVPAGERRPSLAE
LKQPLETIFETPVGSPGSSVDSEEEYESLHAGLDEIHLGEYFGHFRHNEI
RLESLEHLTEEDLMEIGLPVGARKTFLVEVHGIPSARKEPCPPFQVPPSS
SGVAPMDNSSQRRREVVEREDQQNQASSRSSGADSPSHRSEEVFSPRARA
GNLTGAGIPAPARGIPSRLITGVSASSLRARLKQPEKQELGQGVTGRMSP
PLERMARGNGGGGASGAGRDVFGIGQVDYTRDSGVGLSRRDIAG
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mRNA from alignment at F-serratus_M_contig740:282229..284149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig740.18663.1 ID=mRNA_F-serratus_M_contig740.18663.1|Name=mRNA_F-serratus_M_contig740.18663.1|organism=Fucus serratus male|type=mRNA|length=1921bp|location=Sequence derived from alignment at F-serratus_M_contig740:282229..284149+ (Fucus serratus male)
ATGCTCCCAGGTGCTGAAGATGTAGAAAATGAAGGGGATGACGTCGTTGG
CCGTACCCGACCTTCCATCTTCGGACAGACGGAGTTGCACGCTCCGGAAA
CCGATCCGTCGGGGGCAAGCGAAGAGGGCTACGACGCAAGGAGTGATCGA
GGCCCATCTAGCTCAGCGTCGAGCTTGCGTGGGAAGCAGGAAGACTTGGT
GGCCGGGTGGCCGGGGGGCAGTGACGTGGCGACCGTGGACGGGCGATTGG
GTTTTACGCGGTCTGTGCCAGCAGGAGAGCGAAGGCCAAGTCTCGCCGAG
CTCAAACAACCGGTTAAGTGGACGACAGACGCGACATGGAATCGGGAGAG
ATATGAAAGCGTGTTATTCGTGGCTCAATGTTGTCCTCTGTGATGTCTTG
GTTTCCAGTATCTTTTTCTCGAAGCGGGTCGGCGTTGTTGTTCTGGCGTA
CTCACGGGCACCACATACCAGGTGGTACCATACCAGGCGTTATACGGTAC
ATCTCTGCGTGATTTTCGTGAGTTCGATTCTCGTCCCACGACGTTTTTTT
GCTTTATTTTTGTTTTTCCCATAAATCTTCTTTTCGAGAGACGAAAAAAA
AACAGCCATTGTATCCGCCGACGAGGTGTTAAAACATAGAGTGCTGAATG
TCCGCCGCGGCAAGTAGTGTTGTGTAGTGTAGTAGGTATGAATCGCGTAG
AGATGGGAAATAGAATACGTGGTAACCTCAGGGAGGAGGCGCAACTAACC
AGCCTTGCCAACAAGTGTGGACTTGTATCTTGGCACTCTGAAATGAATCC
ATCGGCATAAACCGCTACTCAAGAGTACTCTACGTAAAGTGCGCAGTCGG
CGAGTACTGAACCCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCGCCGCT
GCTTCCGCGTCCTGTTTATGACCCTTCTTCGAAACTGCGCAATCGCGCCG
ACGTCCAGCTCGAGACTATTTTCGAGACTCCGGTGGGTTCCCCCGGGTCG
AGCGTCGACTCGGAGGAAGAGTACGAGAGCCTGCATGCTGGGCTTGACGA
AATCCATCTCGGAGAGTACTTCGGGCATTTCCGCCACAACGAGATTCGGC
TCGAGAGTCTGGAGCATCTCACCGAGGAAGACCTGATGGAGGTGGGTGCT
GTGGGCGATGTTTGTTAGGTCCTGTGTCAAATATTTCGCTGGCTACCCGT
GCCGGCAGGATCCGTTTTTCGTAAACGGCGAGGAATGTAAAGTATGAAAA
AAACGGCGATTTATCCTAAAAGCACAACCCCGTCTTAGTTCTACCGCATT
AGGGTTGGATGAGGTTCACGCTGGCCGCTTTATGTTTGCTTTAAAACGGA
CCCACGCCCCCATGATCTTGTCCTCTCGTAACAGATCGGTCTTCCGGTTG
GGGCGCGGAAGACGTTTCTGGTGGAAGTGCACGGAATCCCGTCCGCTAGG
AAGGAGCCATGTCCGCCGTTTCAAGTGCCCCCATCGTCGTCCGGCGTCGC
GCCGATGGACAACTCCTCGCAGCGTCGGCGTGAAGTCGTGGAAAGAGAAG
ACCAGCAGAACCAGGCCAGCTCTCGATCGTCAGGAGCAGATTCTCCATCG
CACAGGAGTGAAGAGGTGTTTTCGCCGCGAGCGCGTGCGGGCAATTTGAC
GGGCGCGGGGATTCCTGCTCCGGCAAGGGGGATTCCGTCGCGTCTGATCA
CTGGTGTCTCGGCTTCGTCGCTCCGCGCGAGGTTGAAGCAGCCAGAAAAG
CAAGAGCTAGGACAAGGGGTTACTGGCCGGATGTCGCCACCGCTAGAAAG
GATGGCCAGAGGAAATGGCGGTGGAGGCGCGAGTGGTGCTGGTCGTGATG
TTTTCGGGATCGGCCAGGTAGACTATACAAGAGATTCCGGCGTCGGTCTC
TCCCGGCGCGACATAGCCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig740:282229..284149+

>mRNA_F-serratus_M_contig740.18663.1 ID=mRNA_F-serratus_M_contig740.18663.1|Name=mRNA_F-serratus_M_contig740.18663.1|organism=Fucus serratus male|type=CDS|length=2064bp|location=Sequence derived from alignment at F-serratus_M_contig740:282229..284149+ (Fucus serratus male)
ATGCTCCCAGGTGCTGAAGATGTAGAAAATGAAGGGGATGACGTCGTTGG
CCGTACCCGACCTTCCATCTTCGGACAGACGGAGTTGCACGCTCCGGAAA
CCGATCCGTCGGGGGCAAGCGAAGAGGGCTACGACGCAAGGAGTGATCGA
GGCCCATCTAGCTCAGCGTCGAGCTTGCGTGGGAAGCAGGAAGACTTGGT
GGCCGGGTGGCCGGGGGGCAGTGACGTGGCGACCGTGGACGGGCGATTGG
GTTTTACGCGGTCTGTGCCAGCAGGAGAGCGAAGGCCAAGTCTCGCCGAG
CTCAAACAACCGATGCTCCCAGGTGCTGAAGATGTAGAAAATGAAGGGGA
TGACGTCGTTGGCCGTACCCGACCTTCCATCTTCGGACAGACGGAGTTGC
ACGCTCCGGAAACCGATCCGTCGGGGGCAAGCGAAGAGGGCTACGACGCA
AGGAGTGATCGAGGCCCATCTAGCTCAGCGTCGAGCTTGCGTGGGAAGCA
GGAAGACTTGGTGGCCGGGTGGCCGGGGGGCAGTGACGTGGCGACCGTGG
ACGGGCGATTGGGTTTTACGCGGTCTGTGCCAGCAGGAGAGCGAAGGCCA
AGTCTCGCCGAGCTCAAACAACCGCTCGAGACTATTTTCGAGACTCCGGT
GGGTTCCCCCGGGTCGAGCGTCGACTCGGAGGAAGAGTACGAGAGCCTGC
ATGCTGGGCTTGACGAAATCCATCTCGGAGAGTACTTCGGGCATTTCCGC
CACAACGAGATTCGGCTCGAGAGTCTGGAGCATCTCACCGAGGAAGACCT
GATGGAGCTCGAGACTATTTTCGAGACTCCGGTGGGTTCCCCCGGGTCGA
GCGTCGACTCGGAGGAAGAGTACGAGAGCCTGCATGCTGGGCTTGACGAA
ATCCATCTCGGAGAGTACTTCGGGCATTTCCGCCACAACGAGATTCGGCT
CGAGAGTCTGGAGCATCTCACCGAGGAAGACCTGATGGAGATCGGTCTTC
CGGTTGGGGCGCGGAAGACGTTTCTGGTGGAAGTGCACGGAATCCCGTCC
GCTAGGAAGGAGCCATGTCCGCCGTTTCAAGTGCCCCCATCGTCGTCCGG
CGTCGCGCCGATGGACAACTCCTCGCAGCGTCGGCGTGAAGTCGTGGAAA
GAGAAGACCAGCAGAACCAGGCCAGCTCTCGATCGTCAGGAGCAGATTCT
CCATCGCACAGGAGTGAAGAGGTGTTTTCGCCGCGAGCGCGTGCGGGCAA
TTTGACGGGCGCGGGGATTCCTGCTCCGGCAAGGGGGATTCCGTCGCGTC
TGATCACTGGTGTCTCGGCTTCGTCGCTCCGCGCGAGGTTGAAGCAGCCA
GAAAAGCAAGAGCTAGGACAAGGGGTTACTGGCCGGATGTCGCCACCGCT
AGAAAGGATGGCCAGAGGAAATGGCGGTGGAGGCGCGAGTGGTGCTGGTC
GTGATGTTTTCGGGATCGGCCAGGTAGACTATACAAGAGATTCCGGCGTC
GGTCTCTCCCGGCGCGACATAGCCGGCATCGGTCTTCCGGTTGGGGCGCG
GAAGACGTTTCTGGTGGAAGTGCACGGAATCCCGTCCGCTAGGAAGGAGC
CATGTCCGCCGTTTCAAGTGCCCCCATCGTCGTCCGGCGTCGCGCCGATG
GACAACTCCTCGCAGCGTCGGCGTGAAGTCGTGGAAAGAGAAGACCAGCA
GAACCAGGCCAGCTCTCGATCGTCAGGAGCAGATTCTCCATCGCACAGGA
GTGAAGAGGTGTTTTCGCCGCGAGCGCGTGCGGGCAATTTGACGGGCGCG
GGGATTCCTGCTCCGGCAAGGGGGATTCCGTCGCGTCTGATCACTGGTGT
CTCGGCTTCGTCGCTCCGCGCGAGGTTGAAGCAGCCAGAAAAGCAAGAGC
TAGGACAAGGGGTTACTGGCCGGATGTCGCCACCGCTAGAAAGGATGGCC
AGAGGAAATGGCGGTGGAGGCGCGAGTGGTGCTGGTCGTGATGTTTTCGG
GATCGGCCAGGTAGACTATACAAGAGATTCCGGCGTCGGTCTCTCCCGGC
GCGACATAGCCGGC
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