mRNA_F-serratus_M_contig74.18645.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig74.18645.1
Unique NamemRNA_F-serratus_M_contig74.18645.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig74.18645.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 9.560e-7
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = -2 
Query:  201 EGCGKRPSYGVAGSKKSEYCAQHALEVMVDVKNRKC 308
            E C KRP+YGVAGSKK E+C+QHA + MV+V N++C
Sbjct:   67 ENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
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BLAST of mRNA_F-serratus_M_contig74.18645.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.170e-6
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  201 CGKRPSYGVAGSKKSEYCAQHALEVMVDVKNRKC 302
            C KRP+YGVAGSKK E+C+QHA + MV+V N++C
Sbjct:    9 CTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_F-serratus_M_contig74.18645.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 4.610e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = -2 
Query:  201 GCGKRPSYGVAGSKKSEYCAQHALEVMVDVKNRKC 305
            GC K PSYG AGSKK E+CAQHA + MV++++R+C
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRC 147
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig74.18645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE9.560e-763.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI3.170e-664.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FIE1_ECTSI4.610e-562.86EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig74contigF-serratus_M_contig74:403828..404137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932241.7154205-CDS-F-serratus_M_contig74:403827..4041361622932241.7154205-CDS-F-serratus_M_contig74:403827..404136Fucus serratus maleCDSF-serratus_M_contig74 403828..404136 +
1690964214.6327736-CDS-F-serratus_M_contig74:403827..4041361690964214.6327736-CDS-F-serratus_M_contig74:403827..404136Fucus serratus maleCDSF-serratus_M_contig74 403828..404136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig74.18645.1prot_F-serratus_M_contig74.18645.1Fucus serratus malepolypeptideF-serratus_M_contig74 403828..404136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig74.18645.1

>prot_F-serratus_M_contig74.18645.1 ID=prot_F-serratus_M_contig74.18645.1|Name=mRNA_F-serratus_M_contig74.18645.1|organism=Fucus serratus male|type=polypeptide|length=103bp
PSEACPAQYSVVFSPITPNDGMSPHPSAMHFLQWTSSIPSGACCEQYLAV
LVSVIPEFGILPQTSVLHFLFLTSTITSRACCAQYSDFFEPATPYDGLLP
QPS
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mRNA from alignment at F-serratus_M_contig74:403828..404137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig74.18645.1 ID=mRNA_F-serratus_M_contig74.18645.1|Name=mRNA_F-serratus_M_contig74.18645.1|organism=Fucus serratus male|type=mRNA|length=310bp|location=Sequence derived from alignment at F-serratus_M_contig74:403828..404137+ (Fucus serratus male)
CCGTCCGAGGCATGCCCTGCACAGTACTCCGTGGTTTTTTCACCTATCAC
TCCGAACGACGGAATGTCTCCGCATCCTTCGGCTATGCACTTTCTGCAAT
GGACGTCATCCATCCCGTCCGGTGCGTGCTGTGAGCAGTACCTCGCCGTT
TTAGTATCTGTCATTCCGGAGTTCGGCATCTTGCCGCAAACTTCGGTTCT
GCACTTCCTGTTCTTGACATCTACCATCACTTCCAGGGCATGTTGTGCAC
AGTACTCGGACTTCTTCGAACCTGCCACCCCATACGATGGCCTCTTGCCG
CAACCTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig74:403828..404137+

>mRNA_F-serratus_M_contig74.18645.1 ID=mRNA_F-serratus_M_contig74.18645.1|Name=mRNA_F-serratus_M_contig74.18645.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig74:403828..404137+ (Fucus serratus male)
CCGTCCGAGGCATGCCCTGCACAGTACTCCGTGGTTTTTTCACCTATCAC
TCCGAACGACGGAATGTCTCCGCATCCTTCGGCTATGCACTTTCTGCAAT
GGACGTCATCCATCCCGTCCGGTGCGTGCTGTGAGCAGTACCTCGCCGTT
TTAGTATCTGTCATTCCGGAGTTCGGCATCTTGCCGCAAACTTCGGTTCT
GCACTTCCTGTTCTTGACATCTACCATCACTTCCAGGGCATGTTGTGCAC
AGTACTCGGACTTCTTCGAACCTGCCACCCCATACGATGGCCTCTTGCCG
CAACCTTCGCCGTCCGAGGCATGCCCTGCACAGTACTCCGTGGTTTTTTC
ACCTATCACTCCGAACGACGGAATGTCTCCGCATCCTTCGGCTATGCACT
TTCTGCAATGGACGTCATCCATCCCGTCCGGTGCGTGCTGTGAGCAGTAC
CTCGCCGTTTTAGTATCTGTCATTCCGGAGTTCGGCATCTTGCCGCAAAC
TTCGGTTCTGCACTTCCTGTTCTTGACATCTACCATCACTTCCAGGGCAT
GTTGTGCACAGTACTCGGACTTCTTCGAACCTGCCACCCCATACGATGGC
CTCTTGCCGCAACCTTCG
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