mRNA_F-serratus_M_contig736.18596.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig736.18596.1
Unique NamemRNA_F-serratus_M_contig736.18596.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.890e-17
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:   68 CAFRLIRDDVVVMIVCL-LDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIWLSGMT 379
            C FR I D  VV I+ + +D+    G                     GE +WY GCA+ERD + G     Q+A+   ++ R+G+   ++ PA  +ADLGP+RDDEP  DKPVR  +G L+W +  T
Sbjct: 1468 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFT 1593
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.130e-17
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 2 
Query:   68 CAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D +VV +IV  +D+                          GE +WY GCA+  D + G+ +  Q A+ ES++ R+ V  ++ +PA+  ADLGP+RDDEP  DKPVR  +G L+W
Sbjct:  112 CVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMW 232
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.840e-17
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:   68 CAFRLIRDDVVVMIVCL-LDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIWLSGMT 379
            C FR I D  VV I+ + +D+    G                     GE +WY GCA+ERD + G     Q+A+   ++ R+G+   ++ PA  +A+LGP+RDDEP  DKPVR  +G L+W +  T
Sbjct:  915 CVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFT 1040
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5L6D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.540e-16
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2 
Query:   38 IHSG*FGLQCCAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            I +G   +  C  R + D +VV +IV  +D+                          GE +WY GCA+  D + G+ +  Q A+ ES++ R+ V   +  PA+  A++GPRRDDEP  DKPVR  +G L+W
Sbjct:   31 IENGYEQVDPCVLRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAAADAEIGPRRDDEPAVDKPVREAIGCLMW 161
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.720e-16
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 2 
Query:   68 CAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D +VV +IV  +D+                          GE +WY GCA+  D + G+ +  Q A+ ES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W
Sbjct:   43 CVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 163
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-16
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2 
Query:   89 DDVVVMIVCLLDEFQTTG-GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIWLS 370
            +D   ++  L  +F T   GE  W+ GCA+ERD   G LR  Q A+ +S+V R+ V++ S +PA+   DLGP+R+DE     PVRA +GS++W+S
Sbjct:   24 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATHGTDLGPKREDEEGGGWPVRAAIGSMMWVS 118
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.190e-16
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 2 
Query:   68 CAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D +VV +IV  +DE                          GE +W+ GCA+  D + G+ +  Q A+ ES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G LIW
Sbjct:  462 CVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFASLNKKFPVKYMGECTWFDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLIW 582
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.610e-16
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2 
Query:   68 CAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D +VV +IV  +D+                          GE +WY GCA+  D + G+ +  Q A+ +S++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W
Sbjct:   43 CVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 163
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.110e-16
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 2 
Query:   68 CAFRLIRD-DVVVMIVCLLDEFQTTG---------------------GELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D +VV +IV  +D+                          GE +WY GCA+  D + G+ +  Q A+ ES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W
Sbjct:   43 CVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 163
[Close]
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.700e-16
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 2 
Query:   68 CAFRLIRDDVVVMIVCLLDEFQTTGGELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGVEAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIW 364
            C FR + D  V   +      +  G E +WY GCA+  D + G+ +  Q A+ ES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W
Sbjct:  195 CVFRKVVDGEVFAFLNKKSPVKDLG-ECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMW 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig736.18596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L175_9PHAE2.890e-1736.51Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU1_9PHAE9.130e-1736.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE9.840e-1735.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D0_9PHAE1.540e-1633.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.720e-1636.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KB85_9PHAE2.250e-1642.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE3.190e-1637.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE4.610e-1635.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE5.110e-1636.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUE2_9PHAE5.700e-1640.40Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig736contigF-serratus_M_contig736:198780..199158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932231.7582974-UTR-F-serratus_M_contig736:198779..1988821622932231.7582974-UTR-F-serratus_M_contig736:198779..198882Fucus serratus maleUTRF-serratus_M_contig736 198780..198882 +
1690964209.798958-UTR-F-serratus_M_contig736:198779..1988821690964209.798958-UTR-F-serratus_M_contig736:198779..198882Fucus serratus maleUTRF-serratus_M_contig736 198780..198882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932231.7757986-CDS-F-serratus_M_contig736:198882..1991581622932231.7757986-CDS-F-serratus_M_contig736:198882..199158Fucus serratus maleCDSF-serratus_M_contig736 198883..199158 +
1690964209.8085732-CDS-F-serratus_M_contig736:198882..1991581690964209.8085732-CDS-F-serratus_M_contig736:198882..199158Fucus serratus maleCDSF-serratus_M_contig736 198883..199158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig736.18596.1prot_F-serratus_M_contig736.18596.1Fucus serratus malepolypeptideF-serratus_M_contig736 198883..199158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig736.18596.1

>prot_F-serratus_M_contig736.18596.1 ID=prot_F-serratus_M_contig736.18596.1|Name=mRNA_F-serratus_M_contig736.18596.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MIVCLLDEFQTTGGELSWYLGCALERDRKRGVLRTLQRAFNESVVSRYGV
EAVSNLPASQSADLGPRRDDEPVCDKPVRATVGSLIWLSGMT
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mRNA from alignment at F-serratus_M_contig736:198780..199158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig736.18596.1 ID=mRNA_F-serratus_M_contig736.18596.1|Name=mRNA_F-serratus_M_contig736.18596.1|organism=Fucus serratus male|type=mRNA|length=379bp|location=Sequence derived from alignment at F-serratus_M_contig736:198780..199158+ (Fucus serratus male)
ATGACTGGGAGTTACGACAGCTAGATATAAAATAAGCATTCATTCAGGCT
GATTTGGACTTCAATGTTGTGCTTTCCGGCTGATTAGGGATGATGTAGTA
GTTATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACT
CTCGTGGTACCTAGGGTGCGCGTTAGAGCGTGATAGAAAAAGAGGCGTTC
TTCGCACATTGCAGAGAGCGTTTAACGAGTCTGTTGTCAGCCGCTATGGA
GTTGAAGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCC
TAGGAGGGACGACGAGCCGGTCTGTGATAAACCTGTTCGGGCGACTGTTG
GTAGTTTGATTTGGTTGAGTGGTATGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig736:198780..199158+

>mRNA_F-serratus_M_contig736.18596.1 ID=mRNA_F-serratus_M_contig736.18596.1|Name=mRNA_F-serratus_M_contig736.18596.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig736:198780..199158+ (Fucus serratus male)
ATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACTCTC
GTGGTACCTAGGGTGCGCGTTAGAGCGTGATAGAAAAAGAGGCGTTCTTC
GCACATTGCAGAGAGCGTTTAACGAGTCTGTTGTCAGCCGCTATGGAGTT
GAAGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAG
GAGGGACGACGAGCCGGTCTGTGATAAACCTGTTCGGGCGACTGTTGGTA
GTTTGATTTGGTTGAGTGGTATGACGATGATTGTTTGTCTTCTTGACGAG
TTCCAGACTACGGGAGGGGAACTCTCGTGGTACCTAGGGTGCGCGTTAGA
GCGTGATAGAAAAAGAGGCGTTCTTCGCACATTGCAGAGAGCGTTTAACG
AGTCTGTTGTCAGCCGCTATGGAGTTGAAGCAGTGTCTAATCTCCCGGCT
TCTCAATCGGCAGATCTCGGCCCTAGGAGGGACGACGAGCCGGTCTGTGA
TAAACCTGTTCGGGCGACTGTTGGTAGTTTGATTTGGTTGAGTGGTATGA
CG
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