mRNA_F-serratus_M_contig734.18570.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE) HSP 1 Score: 347 bits (890), Expect = 8.130e-98 Identity = 518/1197 (43.27%), Postives = 603/1197 (50.38%), Query Frame = 2
Query: 290 VSDLLQNTINLSARSQSEADGELAWLRERLDNERRELRSRSVKHEARAKDGASRHARIV--------AQP-TFAISGVQGGKENTLHST---SSGTRLHEQAPSTMSVLQLRRFLRAIGEPTVGLKPALAARVDLAISSGAMRAFVESSKGRKVDDSIVCVGERRKKEAMVALAESMICGDHSNSDTPAV-----PRQPLPLRESAASGRNSRSSTCSNAGKGGP---------------KLSGQEQDAAVAKIRSAVERSSSSEKKLPFQDDDTPNTRGARVKKEMEDRLARQQSAKQQSSP-PAKPQPLNENPPAVSTPPSARPLVPSSPAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPAPQSPAPRAADVAKACTPDKG------GKFSSEEGKAEIGKTSAASRPLPTSNT----VKDPADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEAKVEGVKRVEDAAANAAKEKATVTVLKPSGHKSGETNRPGGTAAHGSSAPAPHHDKPASANKGFGSPARFRTP-TAKTPSRKVNPYAKESISTPGPSGLKVAAHKALNRINVKPSTPATAASGGNETHTPSSGNTTQDAFAKFRAMDSNSKKGGPS---FKLRSTPLSKTASPTKHGNSHLVPP-------------SSHKA--DLNTSFSSTTS--KRGAQEAQAAAASNKATQLAQVEAAAXXXXXXXXXXXXXXXXXXXXXXLAEKAAADEXXXXXXXXXXXRAREAAFKAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT---RAIAAEGLRQAELRRKXXXXXXXXXXXXXEEATXXXXXXXXXXXXXXRKEXXXXXXXXKRAQQPKFTSATKPPTPPRPSGXXXXXXXXXAPQPGAXXXXXXXTSMQPYLQAQAQAQTHVQMLNXXXXXXXXXXXXXXXXXXXANEANLKAQALVKQPPLASPWTPSKIGASSAAGDKEEHQLALAKKKQEIAKRMEEMRKAQASSKPTPAAKPATTALTTPAPVASP---------------------VKSAP---KEERESYDDYEVDGXXXXXXXXXXXXXXXXXAEPEEPNDKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 3607
V DLL++TI SA++Q+ ADGEL+WLR RLD+ERR+ R+R K DG S QP + A KEN + +G+R + P+ MSVLQLRRFLR IG+PT GLKP L+AR++ A++SGA++ FV++++ + ++ C GERRK +AM+A+AESM+ D SN+ + A P++PL RES +S KLSGQEQDA VAKIRSA +RS+S EKKLP+QDDDTPNT+GAR+KKEMEDRLARQ++AKQQ P PA E+ P TPPS RP XXXXXXXXXXXXX PP P+ AP+ + +S+ +G +AA PT + KD A A A A +GV A +V+ + + GFGSP R RTP TAK+PSRK +P+AK+SISTPGPSGLK AAHKA +R+ VK A +E +P+ G+TTQDAFAKFRAMDSNSKK S FKLRS S K S KA ++NT SS+TS KRG + XXXXXXXXXXXXXXXXXX LAEK AADEXXXXXXXXXXX XX XXXXXXXXXXXXXXXXXXXXX +A AAE LR XXXXXXXXXXXXX XXXXXXXXXXXXXX XXXXXXXX S KPPTPPR XX P+PG + QAQA X A Q P AS WTPSK S+A E QLALAKKK+EIAKRMEE+R + +TP+ VKS P KEE XXXXXXXXXXXXXXXXX DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIFPEFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 7 VGDLLEDTITRSAQNQNGADGELSWLRRRLDSERRDPRARG-KLALENVDGISSGGXXXXXXXXXXQTQPRSVAKKAAPVDKENASAAAVAKPAGSRASKVPPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQP-RAAVECAGERRKTDAMLAVAESMLNLDGSNTTSSAAGDATTPKRPL--RESLSSXXXXXXXXXXXXXXXXXXXXXQQQVPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKQQQQPAPAAASTKAESLPTPVTPPSLRPXX-------------------------------XXXXXXXXXXXXXRAAQPPPPPKGNAPQPSXTTXXXXXXXXXXXXXXADMASKASDQAVGGDAAAVPASPTGSAPVPIAKDSAAAA---------------------------------------AVNAVTDGV----------AARSVGGSVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKQPPSA-----NSEIPSPT-GSTTQDAFAKFRAMDSNSKKASGSVHSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXXPQKLDFSGSKASNNINTPTSSSTSSLKRGG---------DAPGSXXXXXXXXXXXXXXXXXXXXXXXXXXKARSLAEKEAADEXXXXXXXXXXXXXXXXXXXXXXXXXAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSV-KPPTPPR----VAVKPXXTPPRPGN--------------KGQAQA-------------------------PXXXXXXXXXAAAAPQVPSASSWTPSKSSGSAA----EVRQLALAKKKEEIAKRMEEIRNKKTKG-----------TASTPSXXXXXXXXXXXXXXXXXXXXXXXXXXVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 1045
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: D8LQB1_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB1_ECTSI) HSP 1 Score: 228 bits (582), Expect = 6.310e-60 Identity = 314/664 (47.29%), Postives = 345/664 (51.96%), Query Frame = 2
Query: 1766 APAPHHDKPASANKG-FGSPARFRTP-TAKTPSRKVNPYAKESISTPGPSGLKVAAHKALNRINVKPSTPATAASGGNETHTPSSGNTTQDAFAKFRAMDSNSKKGG---PSFKLRST----PLSKTASPTKHGNSHLVPPSSHKADLNTSFSSTTS------------KRGAQEAQAAAASNKATQLAQVEAAAXXXXXXXXXXXXXXXXXXXXXXLAEKAAADEXXXXXXXXXXXRAREAAFKAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT---RAIAAEGLRQAELRRKXXXXXXXXXXXXXEEATXXXXXXXXXXXXXXRKEXXXXXXXXKRAQQPKFTSATKPPTPPRPSGXXXXXXXXXAPQPGAXXXXXXXTSMQPYLQAQAQAQTHVQMLNXXXXXXXXXXXXXXXXXXXANEANLKAQALVKQPPLASPWTPSKIGASSAAGDKEEHQLALAKKKQEIAKRMEEMRKAQASSKPTPAAKPATTALTTPAP-----------------------VASPVKSAP---KEERESYDDYEVDGXXXXXXXXXXXXXXXXXAEPEEPNDKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 3607
A AP +KP S +KG FGSP R RTP TAK+PSRK +P+AK+SISTPGPSGLK AAHKA +R+ VKP A E +P+ G+TTQDAFAKFRAMDSNSKK SFKLRS PLS K D + S +S KRG AA + + T XXXXXXXXXXXXXX LAEKAA DE +AREAA AE XXXXXXXXXXXXXXXXXXXXX +A AAE LR+AE +++ XXXXXX X XXXXXXXXXXXX XXXXXXXX XXX P + QAQA X A Q P AS WTPSK S+A E QLALAKKK+EI EE+R + +TP+ VA+PVKS P KEE XXXXXXXXXXXXXXXXX DKS+IPDWARGK LAKILD+QYGGPNPLNPDKIFPEFFTCNLEHIFNTKK KWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK
Sbjct: 63 ATAPPSEKPTSPSKGGFGSPGRHRTPATAKSPSRKASPFAKDSISTPGPSGLKAAAHKAFSRVGVKPPPSANP-----EVPSPT-GSTTQDAFAKFRAMDSNSKKASGSVQSFKLRSPSPKGPLSSAKQXXXXXXXXXXXXXXQKLDFSGSKASNNXXXXXXXXXXXXXKRGGD---AAGSXXEGTPXXXXX------XXXXXXXXXXXXXXAKARSLAEKAATDEARRDAQAKAELKAREAAXXXXAEREAKARKLEEEXXXXXXXXXXXXXXXXXXXXXERLAEKAAAAEALRKAEEKKRAERRAALXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------XXXXXXXPGNKGQAQA-------------------------PXXXXXXXXVAAAAPQVPSASSWTPSKSSGSAA----EVRQLALAKKKEEIXXXXEEIRNKKTKG-----------TASTPSXXXXXXXXXXXXXXXXXXXXXXXXVATPVKSVPAETKEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKSAIPDWARGKALAKILDKQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKQKWDRSSSGNWHTDRLTIAEKLAYQRAMGFDK 630
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: D7G3R5_ECTSI (INCENP_ARK-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R5_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.970e-26 Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 2
Query: 3374 IPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKSKWDRSSSGNWHTDRLTIAEKLAYQRAMGF 3601
+P+WA + +A L+RQYGG P+NP+KIF +F+TC+LE IF+T K KWDR S+G+W +DRLTIAEKLAY RAMG+
Sbjct: 42 VPEWATNEGIAAALERQYGGDKPINPNKIFVDFYTCSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGY 117
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A7S2M2L9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M2L9_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.420e-19 Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 2
Query: 3344 EPEEPNDKSSIPDWARGKTLAKILDRQYG-GPNPLNPDKIFPEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 3607
E E K +P+WA+ L + L+RQ+ GPN L+PDKIF E TCNLE IF+ KKS++ R +SSGNW D +TIAEKL Y+R MG+ K
Sbjct: 220 EYETQRPKKKVPEWAQRHNLHRALERQFADGPNRLDPDKIFGEVLTCNLEEIFDKKKSRYQRRTSSGNWTKDHVTIAEKLTYKRTMGYQK 309
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: D8LQB0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB0_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.070e-18 Identity = 77/161 (47.83%), Postives = 95/161 (59.01%), Query Frame = 2
Query: 761 MVALAESMICGDHSNSDTPAV-----PRQPLPLRESAASGRNSR----------------SSTCSNAGKGGPKLSGQEQDAAVAKIRSAVERSSSSEKKLPFQDDDTPNTRGARVKKEMEDRLARQQSAKQQSSPPAKPQPLNE--NPPAVSTPPSARPLV 1174
M+A+AESM+ D S++ + A P++PL RES +S N KLSGQEQDA VAKIRSA +RS+S EKKLP+QDDDTPNT+GAR+KKEMEDRLARQ++AK+Q PA E + P TPPS RP V
Sbjct: 1 MLAVAESMLNPDGSSTTSSAAGDATAPKRPL--RESLSSANNXXXXXXXXXXXXXXXXXXQQQVPPVTPATSKLSGQEQDAVVAKIRSAAKRSASPEKKLPYQDDDTPNTKGARLKKEMEDRLARQKAAKKQQXXPAPAAASTEAESLPTPVTPPSLRPPV 159
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A835ZCU2_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 7.140e-17 Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query: 3374 IPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKSKW-DRSSSGNWHTDRLTIAEKLA 3580
IP WARGK L L+RQ+GG P+NPD IF EFFTC+L+HIF+T+K ++ RSSSGNW D+LT+ E+LA
Sbjct: 460 IPAWARGKQLEAALERQFGGSAPINPDTIFAEFFTCDLQHIFDTRKKRYVTRSSSGNWLQDKLTLPERLA 529
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A1E7FGC0_9STRA (INCENP_ARK-bind domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGC0_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 8.970e-16 Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 2
Query: 3365 KSSIPDWARGKTLAKILDRQYGG---PNPLNPDKIFPEFFTCNLEHIFNTKKSKWDRS--SSGNWHTDRLTIAEKLAYQRAMGF 3601
K IP WA L L++QY G ++PD+IFPE +C+LE IF TKK+K RS SSGNW D++T+AEKL Y+R MGF
Sbjct: 30 KKKIPTWALRANLYPALEKQYNGHIGSRKVDPDEIFPEVQSCDLEAIFGTKKAKAYRSRASSGNWAQDKVTVAEKLVYKREMGF 113
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A7S2S9K2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S9K2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 4.410e-15 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 2
Query: 3365 KSSIPDWARGKTLAKILDRQY-GGPNPLNPDKIFPEFFTCNLEHIFNTKKSKW-DRSSSGNWHTDRLTIAEKLAYQRAMGFDK 3607
K +P+WA L K L+RQ+ GP+ ++PD++FP+ TC+LE IF+ KK ++ R+SS NW D ++ AE L Y+R MGFDK
Sbjct: 166 KKKVPEWAMRSNLLKALERQFLDGPDRIDPDQLFPQVTTCDLEAIFDQKKKRYATRTSSANWAKDSVSAAETLVYKRTMGFDK 248
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: D8LJ56_ECTSI (INCENP_ARK-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ56_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.300e-14 Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 2
Query: 3374 IPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNTKKSKWDR-SSSGNWHTDRLTIAEKLAYQRAMGFDK 3607
IP WA+G L++ L RQY ++PDKIFPE FTC+LE IF KS++ R SS NW DR+T E L Y+R++G K
Sbjct: 195 IPAWAKGSALSEALTRQYATGQKVDPDKIFPEVFTCDLEAIFPVNKSRYHRRGSSANWTPDRVTPQEVLTYKRSVGIAK 273
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Match: A0A7S3Y2K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2K4_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 3.690e-14 Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 3344 EPEEPNDKSSIPDWARGKTLAKILDRQYGGPNPLNPDKIFPEFFTCNLEHIFNT----KKSKWD-RSSSGNWHTDRLTIAEKLAYQRAMGF 3601
E E K +IP WARG L + L RQ+ + ++PD IFPE TC LE IF KK+K+ R SSGNW D+LT+ EK+ YQRAMGF
Sbjct: 144 EVEASRSKKNIPSWARGAELKEQLCRQF--TDLVDPDSIFPEVSTCVLEDIFQEAAPKKKAKYKARKSSGNWQRDKLTLVEKMDYQRAMGF 232 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig734.18570.1 >prot_F-serratus_M_contig734.18570.1 ID=prot_F-serratus_M_contig734.18570.1|Name=mRNA_F-serratus_M_contig734.18570.1|organism=Fucus serratus male|type=polypeptide|length=1120bp MLHVSMAPRSFDTVSDLLQNTINLSARSQSEADGELAWLRERLDNERRELback to top mRNA from alignment at F-serratus_M_contig734:245688..252679- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig734.18570.1 ID=mRNA_F-serratus_M_contig734.18570.1|Name=mRNA_F-serratus_M_contig734.18570.1|organism=Fucus serratus male|type=mRNA|length=6992bp|location=Sequence derived from alignment at F-serratus_M_contig734:245688..252679- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig734:245688..252679- >mRNA_F-serratus_M_contig734.18570.1 ID=mRNA_F-serratus_M_contig734.18570.1|Name=mRNA_F-serratus_M_contig734.18570.1|organism=Fucus serratus male|type=CDS|length=6720bp|location=Sequence derived from alignment at F-serratus_M_contig734:245688..252679- (Fucus serratus male)back to top |