mRNA_F-serratus_M_contig7272.18504.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7272.18504.1
Unique NamemRNA_F-serratus_M_contig7272.18504.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: D8LCF8_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF8_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 1.700e-148
Identity = 222/305 (72.79%), Postives = 258/305 (84.59%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQGQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPEVTRFVRLPPNYDKLTMDGIAGLTAI-SC 912
            MARKDMH D+  DT KIAG+Y+TA E WR+RER+T+ IQR+WRGFSAR++VW  REEK     KEMEE AE E  + + ++RE+QRRMNP+T QDFE+LY+ELDQWREAETK IK AE G+ RKLAL+ELLHKETRLLQTIDRLK+ AAH GKERRTRRMLELMS  K+WEMGDGE++ IHTPWT RA++LQ    ++YEALE PLL VEERL+VLLHLKWTV EFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQ+IRNL+L F ETPDFNPE +RF+R+PP Y KLT +G+ GLT + SC
Sbjct:   92 MARKDMHLDDGCDTFKIAGEYRTAGEYWRVRERKTVTIQRFWRGFSARSRVWCRREEKWALEEKEMEEVAEEEGKRTQEKQREMQRRMNPSTVQDFEVLYNELDQWREAETKSIKQAEVGERRKLALRELLHKETRLLQTIDRLKITAAHEGKERRTRRMLELMSASKQWEMGDGEVSEIHTPWTNRARDLQ----DMYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSC 392          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A7S3XKM5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM5_HETAK)

HSP 1 Score: 254 bits (650), Expect = 5.830e-81
Identity = 129/207 (62.32%), Postives = 166/207 (80.19%), Query Frame = 1
Query:  241 KREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQGQS-RKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPEVTRFVRLPP 858
            +REV+RRM+P +A DFE+LY+EL++WR AE KR++ A  G + R+ A Q LLHKETRLLQTIDRLK  AA  G+  R +RML+L++MPKKWE+ DGE+  +HTP+T RA EL+    ELY  L  PLLGV+ERL+VLLH+KWTV+EFDC LTRDI ELVDREADLL+RGRGE +L  LR+++ NL+L F+ETP+FNPE  RF+++PP
Sbjct:    4 RREVRRRMDPRSAADFEVLYNELERWRAAEAKRVRAAGLGPADRQRAHQALLHKETRLLQTIDRLKAAAAKEGRAERVQRMLDLLAMPKKWELSDGEVTEVHTPFTTRAAELR----ELYRGLTAPLLGVDERLDVLLHVKWTVKEFDCPLTRDIVELVDREADLLNRGRGEKALEGLRRRVANLFLRFVETPEFNPEAARFLKIPP 206          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: F0Y8I3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8I3_AURAN)

HSP 1 Score: 252 bits (644), Expect = 8.940e-79
Identity = 139/287 (48.43%), Postives = 196/287 (68.29%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKL---AEQGQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPEVTRFVRL 852
            M R+D+  D+  D ++ + +Y TAA+L  ++ ++T V+Q +WRG+ AR + W IR+      + E   A E  R  +RR++ EV+RR+NP +A+DFE+LY+EL+ WR  E +R++    A  G   K A+ ++L KET+ LQTIDRLK +AA  GK RR  R++ELM+ PKKWE GDGE+  +HTP+T RAQEL+    +LY  L    L  +ERL +LL++KWTV+EF C LT DI EL DREADLL+RGR E SL  LR++   L+  F+ETPDFNPE TRF+++
Sbjct:   74 MKREDLLMDDRGDVVRASRRYFTAAQLLELKRQKTQVLQCFWRGYLARRRTWGIRQRLYDAQVAEERGADEAGRAASRRRQFEVERRINPRSAKDFELLYNELEAWRAKEMERVRAIPDATPGDV-KAAMSDVLAKETKALQTIDRLKAQAAKEGKARRVERVMELMAFPKKWEAGDGELHEVHTPFTTRAQELR----DLYRGLATDRLPPDERLQILLNVKWTVQEFACPLTHDIVELCDREADLLNRGRNEKSLEGLRKRTETLFQQFIETPDFNPESTRFLKV 355          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A421EUQ5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EUQ5_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.950e-77
Identity = 134/279 (48.03%), Postives = 192/279 (68.82%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQ--GQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPE 831
            M R+D+  D + D    A  Y  + +L  +RE   +++QR WRGF AR+ V+ I E++RR  +    EA E E     RQ+REV RRM+P T  DFE+LY+ELD+WR+ E ++++   +     R+ AL  +L KET+LLQTIDRLK+ A    +++R   ML+ M+ PK+W+M DG++  +HTP+T RA+EL     +LY  L +PL  V+ERL++LLH+KWTV+EFDC LTR++ EL+DREAD+LSRGR E SL  LR+++ NL+L F+ETP+FNPE
Sbjct:  194 MTRRDLKLDETYDRHVTARPYFDSYQLDSLREDSVLLMQRLWRGFRARSYVYNIGEQRRRMDMLAEVEAQENEAEDVSRQRREVNRRMHPNTVSDFEVLYNELDKWRQVECRKVREQRELDPSERQRALDAILAKETKLLQTIDRLKLTATDANRKQRIEAMLQFMARPKQWQMSDGDVKEVHTPFTVRAKELM----DLYHGLRMPLGSVDERLDMLLHIKWTVQEFDCALTRELVELIDREADMLSRGRKEKSLEGLRKRLTNLFLQFIETPEFNPE 468          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: W2QPI0_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QPI0_PHYPN)

HSP 1 Score: 251 bits (640), Expect = 4.940e-76
Identity = 136/279 (48.75%), Postives = 191/279 (68.46%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQ--GQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPE 831
            M+R+D+  D S D    A  Y  + +L  +RE   +++QR+WRGF AR  V+ IRE++RR       EA E E     RQ+REV RRM+P T  DFEILY+EL++WR+ E ++++   +     R+ AL  +L KET+LLQTIDRLK+ A    +++R   ML+ M+ PK+W+M DG +  +HTP+T RA+EL     +LY  L  PL  V+ERL++LLH+KWTV+EFDC LTR++ EL+DREAD+LSRGR E SL  LR+++ NL+L F+ETP+FNPE
Sbjct:  253 MSRRDLKLDESFDRHVTARPYFDSYQLDSLREDSVLLMQRWWRGFRARLYVYSIREQRRRVTNLAEIEAHENEAEDVSRQRREVNRRMHPNTVSDFEILYNELEKWRQVECRKVREQRELDPSERQRALDAILAKETKLLQTIDRLKLTATEANRKQRIEAMLQFMARPKQWQMSDGGVKEVHTPFTVRAKELM----DLYHGLRTPLSSVDERLDMLLHVKWTVQEFDCALTRELVELIDREADMLSRGRKEKSLEGLRKRLTNLFLQFIETPEFNPE 527          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A6A3TZA4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TZA4_9STRA)

HSP 1 Score: 251 bits (640), Expect = 4.940e-76
Identity = 137/279 (49.10%), Postives = 190/279 (68.10%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQ--GQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPE 831
            M+R+D+  D S D    A  Y  + +L  +RE   +++QR WRGF AR  V+ IRE++RR       EA E E     RQ+REV RRM+P T  DFE+LY+ELD+WR+ E ++++   +     R+ AL  +L KET+LLQTIDRLK+ A    +++R   ML+ M+ PK+W+M DG I  +HTP+T RA+EL     +LY  L  PL  V+ERL++LLH+KWTV+EFDC LTR++ EL+DREAD+LSRGR E SL  LR+++ NL+L F+ETP+FNPE
Sbjct:  253 MSRRDLQLDESFDRHVSARPYFDSYQLDSLREDSVLLMQRLWRGFRARLYVFNIREQRRRVSKLAEIEAQENETEDVNRQRREVNRRMHPNTVSDFEVLYNELDKWRQVECRKVREQRELDPSERQRALDAILSKETKLLQTIDRLKLTATDANRKQRIEAMLQFMARPKQWQMSDGGIKEVHTPFTVRAKELL----DLYHGLRTPLSSVDERLDMLLHIKWTVQEFDCALTRELVELIDREADMLSRGRKEKSLEGLRKRLTNLFLQFIETPEFNPE 527          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: H3GFT4_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GFT4_PHYRM)

HSP 1 Score: 249 bits (637), Expect = 2.280e-75
Identity = 137/279 (49.10%), Postives = 189/279 (67.74%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQ--GQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPE 831
            M+R+D+  D S D    A  Y  + +L  +RE   +++QR WRGF AR  V+ IRE++RR       EA E E     RQ+REV RRM+P T  DFE+LY+ELD+WR  E ++++   +     R+ AL  +L KET+LLQTIDRLK+ A    +++R   ML+ M  PK+W+M DG+I  +HTP+T RA+EL     +LY  L  PL  V+ERL++LLH+KWTV+EFDC LTR++ EL+DREAD+LSRGR E SL  LR+++ NL+L F+ETP+FNPE
Sbjct:  274 MSRRDVKLDESFDRHVTARPYFDSYQLDSLREDSVLLMQRLWRGFRARLFVYNIREQRRRASKLAEIEAQENEADDISRQRREVNRRMHPNTVSDFEVLYNELDKWRLVECRKVREQRELDPSERQRALDAILAKETKLLQTIDRLKLTATEANRKQRIEAMLQFMGRPKQWQMSDGDIKEVHTPFTVRAKELM----DLYHGLRTPLSSVDERLDMLLHVKWTVQEFDCPLTRELVELIDREADMLSRGRKEKSLEGLRKRLTNLFLQFIETPEFNPE 548          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A7S2FH83_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FH83_9STRA)

HSP 1 Score: 246 bits (629), Expect = 5.000e-75
Identity = 134/284 (47.18%), Postives = 193/284 (67.96%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAEQGQSR-KLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPEVTRFVR 849
            M RKD++ D++ D   +A  Y +AA+L  ++  +T+VIQ Y+RG+ AR + W +RE    + + E E A +      +R++ EV+RRMNP +  DFE+LY+EL+ WR+ E   I       +  K  + +LL K+++ LQTIDRLK+ A+  G ++R  RMLELMS PK WE+G+GE+  +HT  TERAQEL     ELY+ L    L ++ERL+VLL+ KWT ++FDC LTRDI EL DREA++L+RGR EA+L  LR+++ NL+L F+ETPDFNPE  RF++
Sbjct:  185 MKRKDLYMDDAGDNEIVARPYFSAAQLHELKRDKTLVIQCYYRGYVARKRTWAMREALYLEHLAEREAAEKSAAANEKRRQYEVERRMNPKSLTDFELLYNELEAWRQKEMAAISALNLSDTEYKERMNDLLAKQSKALQTIDRLKVDASKHGHQQRVGRMLELMSKPKLWELGNGEVQEVHTASTERAQELM----ELYQGLNDTRLAIDERLDVLLNTKWTAKDFDCPLTRDIVELCDREAEMLNRGRSEATLGGLRKRLSNLFLQFVETPDFNPEAARFLK 464          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A061RZE0_9CHLO (Iq and ubiquitin-like domain-containing n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZE0_9CHLO)

HSP 1 Score: 243 bits (621), Expect = 6.210e-75
Identity = 142/301 (47.18%), Postives = 201/301 (66.78%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREE--KRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAE-QGQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPEVTRFVRLPPNYD---KLTMDG 885
            M R  +  D S D + + G Y TA EL RI++R+ ++IQ   RG+ AR +   ++ +  +R   +KE EEA   E    RR   E++RRM+P TA DFEILY+EL+ WR  ET +IK +E   +++  AL++LL KET+LLQTIDRLK  A    K  R  + L+ MS PKKW++ +G +  +HTP+T R++EL     +LY  L +P L V+ERL+VLLH+KWTV+EFDC LTR+I EL+DREADLL+RGR    +  LR++I +L+L F+ETP+FNPE  RF  +P ++D   ++ MDG
Sbjct:   81 MRRPGVLLDESGDYILVPGPYMTAEELLRIKDRKAVIIQCALRGWLARRRANELKRQNIERESFLKEEEEARAEEESAKRRY--EIERRMHPRTAADFEILYNELEAWRLQETNKIKNSELDAETQHEALRQLLSKETKLLQTIDRLKSAANSENKALRIAKTLKDMSAPKKWDLSNGRMVQVHTPFTTRSKELA----QLYNGLNLPNLTVDERLDVLLHVKWTVKEFDCNLTREIVELIDREADLLNRGRSPTIMDGLRRRISSLFLAFIETPEFNPEAGRFQIVPLDFDGYQQVPMDG 375          
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Match: A0A8K1CST2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CST2_PYTOL)

HSP 1 Score: 245 bits (626), Expect = 3.750e-74
Identity = 131/279 (46.95%), Postives = 189/279 (67.74%), Query Frame = 1
Query:    1 MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNKVWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILYSELDQWREAETKRIKLAE--QGQSRKLALQELLHKETRLLQTIDRLKMKAAHGGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYEALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQKIRNLYLLFLETPDFNPE 831
            M R+D+  DN RD    A  Y  + +   ++E   ++IQR WRG+ AR+ V  +  EK+R   +   +A  +       QKREVQRRM+P T  DFE+LY+ELD+WR+ ET+++         +R+ AL+ +L KET+LLQTIDRLK+ A    +++R   ML+ M+ PK+W+M DG +  +HTP+T RA+EL     +LY  L++ L+ V+ERL+VLLH KWTV+EF+C LTR+I EL+DREAD+L+RGR E SL  LR+++ NL+L F+ETP+FNPE
Sbjct:  230 MERRDLRMDNGRDRTVTAKPYFDSYQFHCLKEDSVLLIQRLWRGYKARSYVHNLCVEKQRMATQHRLDAEHMSFSDVEHQKREVQRRMHPKTVSDFEVLYNELDKWRQIETRKLNEDRTLDDLARQDALEAILAKETKLLQTIDRLKLTATDANRKQRIESMLQFMARPKQWQMSDGGVREVHTPFTIRAKELA----DLYHGLKMSLISVDERLDVLLHAKWTVKEFECPLTREIIELIDREADMLNRGRKEKSLEGLRKRLNNLFLQFIETPEFNPE 504          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7272.18504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF8_ECTSI1.700e-14872.79Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S3XKM5_HETAK5.830e-8162.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y8I3_AURAN8.940e-7948.43Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A421EUQ5_9STRA3.950e-7748.03Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
W2QPI0_PHYPN4.940e-7648.75Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A6A3TZA4_9STRA4.940e-7649.10Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
H3GFT4_PHYRM2.280e-7549.10Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7S2FH83_9STRA5.000e-7547.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A061RZE0_9CHLO6.210e-7547.18Iq and ubiquitin-like domain-containing n=1 Tax=Te... [more]
A0A8K1CST2_PYTOL3.750e-7446.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7272contigF-serratus_M_contig7272:17330..19205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.4
Seed ortholog evalue3.5e-118
Seed eggNOG ortholog2880.D8LCF8
Preferred nameIQUB
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
EggNOG free text desc.smoothened signaling pathway
EggNOG OGs28JBT@1,2QRQT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size915
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7272.18504.1prot_F-serratus_M_contig7272.18504.1Fucus serratus malepolypeptideF-serratus_M_contig7272 17330..19205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.1972117-CDS-F-serratus_M_contig7272:17329..176561622932215.1972117-CDS-F-serratus_M_contig7272:17329..17656Fucus serratus maleCDSF-serratus_M_contig7272 17330..17656 -
1690964202.3626573-CDS-F-serratus_M_contig7272:17329..176561690964202.3626573-CDS-F-serratus_M_contig7272:17329..17656Fucus serratus maleCDSF-serratus_M_contig7272 17330..17656 -
1622932215.215606-CDS-F-serratus_M_contig7272:18075..182041622932215.215606-CDS-F-serratus_M_contig7272:18075..18204Fucus serratus maleCDSF-serratus_M_contig7272 18076..18204 -
1690964202.376154-CDS-F-serratus_M_contig7272:18075..182041690964202.376154-CDS-F-serratus_M_contig7272:18075..18204Fucus serratus maleCDSF-serratus_M_contig7272 18076..18204 -
1622932215.2336607-CDS-F-serratus_M_contig7272:18398..185661622932215.2336607-CDS-F-serratus_M_contig7272:18398..18566Fucus serratus maleCDSF-serratus_M_contig7272 18399..18566 -
1690964202.3849802-CDS-F-serratus_M_contig7272:18398..185661690964202.3849802-CDS-F-serratus_M_contig7272:18398..18566Fucus serratus maleCDSF-serratus_M_contig7272 18399..18566 -
1622932215.2526023-CDS-F-serratus_M_contig7272:18914..192051622932215.2526023-CDS-F-serratus_M_contig7272:18914..19205Fucus serratus maleCDSF-serratus_M_contig7272 18915..19205 -
1690964202.393901-CDS-F-serratus_M_contig7272:18914..192051690964202.393901-CDS-F-serratus_M_contig7272:18914..19205Fucus serratus maleCDSF-serratus_M_contig7272 18915..19205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7272.18504.1

>prot_F-serratus_M_contig7272.18504.1 ID=prot_F-serratus_M_contig7272.18504.1|Name=mRNA_F-serratus_M_contig7272.18504.1|organism=Fucus serratus male|type=polypeptide|length=305bp
MARKDMHFDNSRDTLKIAGKYQTAAELWRIRERQTIVIQRYWRGFSARNK
VWYIREEKRRQIIKEMEEAAELERCKARRQKREVQRRMNPTTAQDFEILY
SELDQWREAETKRIKLAEQGQSRKLALQELLHKETRLLQTIDRLKMKAAH
GGKERRTRRMLELMSMPKKWEMGDGEIAAIHTPWTERAQELQARPPELYE
ALEVPLLGVEERLNVLLHLKWTVREFDCRLTRDIAELVDREADLLSRGRG
EASLRPLRQKIRNLYLLFLETPDFNPEVTRFVRLPPNYDKLTMDGIAGLT
AISC*
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mRNA from alignment at F-serratus_M_contig7272:17330..19205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7272.18504.1 ID=mRNA_F-serratus_M_contig7272.18504.1|Name=mRNA_F-serratus_M_contig7272.18504.1|organism=Fucus serratus male|type=mRNA|length=1876bp|location=Sequence derived from alignment at F-serratus_M_contig7272:17330..19205- (Fucus serratus male)
ATGGCACGCAAGGATATGCACTTTGACAACAGCCGCGACACTCTGAAGAT AGCCGGCAAATATCAAACCGCGGCAGAACTCTGGAGGATTCGAGAGCGTC AGACGATTGTCATTCAACGGTACTGGCGAGGCTTCTCCGCCCGAAACAAA GTCTGGTATATTCGAGAGGAAAAACGGAGGCAAATAATCAAGGAAATGGA GGAGGCGGCCGAGTTGGAACGTTGTAAGGCACGGCGACAAAAGCGAGAGG TGCAGCGGCGCATGAATCCGACAACCGCTCAGGACTTCGAGGTGAAAGTG AAAATGGAAAAGCGGTACAAAGCAGGGGAGGCTTCTGTCGTCAGGACTAC AATTGTTTTCATACGACAACACTGCGCTCTACTTCCCTCGTGCTACTGGC TGCAGGTTCATGCCCCCCGCTCGGGAATATAAAACATATGCCCTAGATAA AATGCTGTCACCACTTAGCCCGAGCATCTAAACCTTTTTGGTAGTAAAGG TTGACATCTTTGGGACGAAAAGTCCCCCTGCCTCGGTGAGCGTCGTATGC TAATCATCGATAGGGTTTGGTTTGTTTGAATGTTTGTTTGTTTATTTGTC TGTTCTTGCTTTTCATCGCGATGTCCGTGGTCAATAAAGATTCTCTACAG TGAGCTTGATCAATGGAGAGAAGCGGAAACGAAGCGTATCAAGCTTGCCG AACAAGGCCAGAGTCGGAAGCTCGCGCTACAAGAGCTGCTTCACAAAGAG ACGCGTCTGCTCCAGACGATTGATCGTCTCAAGATGAAAGCGGCGCATGG GGGAAAGGTGTGCGCTGACGGCGCTTCTCCAAAGGACGGGATCTAGAACT AGAAATTCAGAAGAAGAATTCGACCTTTCGATTGTGAAGGTATCCCACTC ATGATCCCCCCAAAGACTGTCGTGGGCTCACACAGTAGCGATGCCCACAG CTCTCAGCTCTCTCTCGACCCTATCAAATATTGCGTATATCGTCTTTGTA GGAACGCCGTACGAGACGCATGCTGGAGCTGATGTCGATGCCCAAAAAGT GGGAGATGGGCGACGGTGAAATCGCCGCTATTCATACACCGTGGACGGAA AGGGCGCAGGAGCTCCAGGCACGCCCACCTGTAGCCTATGTCTTAGAGCG CATCGCCACTAGGTTGTATTATTTTTCGATCCCTTATATATAATTTGATC CTTTCTATGTAGCAATGGTTGACGAAGCTTCCAGGAGGTTCAAGTCTTCC GCCCGGCCACGGTGAAGACCCGCGTGACTCTCAGCCAATCCGTACCATGG TACCGCGCATCCACATACTCCCGACGGCCATAATTAAATCTTCCCAGCCT GAAGTTATGGGAGGGTCTCATAAACGCTCTCTCCTGCATACTGTAGGCTA CTTGTCTTTGGTTTTTTACCCCCACTGCTGTTCCCGTCGAACGCGAGGTA GGTTTACATTCGCCCCCTCTATTATCGAGTTTCACTCTCAATTGAGCAAC GTACGAATACATTCTCACATCATAACACGTCGTCCGCGTTGCTACTCAGG AGCTGTACGAGGCCCTCGAGGTGCCCCTGCTGGGCGTTGAAGAACGCCTC AATGTGCTGCTGCACCTCAAGTGGACCGTTAGAGAGTTTGACTGCCGATT AACGCGCGACATCGCGGAGCTTGTAGACAGAGAGGCGGATCTCCTCAGCC GTGGACGGGGGGAGGCTAGTCTGCGTCCCCTCCGCCAGAAAATTCGTAAT TTGTACCTCCTATTTCTGGAAACGCCAGATTTCAACCCTGAGGTAACGCG CTTCGTGCGGTTGCCACCCAACTACGACAAGCTCACGATGGACGGTATCG CGGGGTTGACGGCAATTTCGTGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7272:17330..19205-

>mRNA_F-serratus_M_contig7272.18504.1 ID=mRNA_F-serratus_M_contig7272.18504.1|Name=mRNA_F-serratus_M_contig7272.18504.1|organism=Fucus serratus male|type=CDS|length=1830bp|location=Sequence derived from alignment at F-serratus_M_contig7272:17330..19205- (Fucus serratus male)
ATGGCACGCAAGGATATGCACTTTGACAACAGCCGCGACACTCTGAAGAT
AGCCGGCAAATATCAAACCGCGGCAGAACTCTGGAGGATTCGAGAGCGTC
AGACGATTGTCATTCAACGGTACTGGCGAGGCTTCTCCGCCCGAAACAAA
GTCTGGTATATTCGAGAGGAAAAACGGAGGCAAATAATCAAGGAAATGGA
GGAGGCGGCCGAGTTGGAACGTTGTAAGGCACGGCGACAAAAGCGAGAGG
TGCAGCGGCGCATGAATCCGACAACCGCTCAGGACTTCGAGATGGCACGC
AAGGATATGCACTTTGACAACAGCCGCGACACTCTGAAGATAGCCGGCAA
ATATCAAACCGCGGCAGAACTCTGGAGGATTCGAGAGCGTCAGACGATTG
TCATTCAACGGTACTGGCGAGGCTTCTCCGCCCGAAACAAAGTCTGGTAT
ATTCGAGAGGAAAAACGGAGGCAAATAATCAAGGAAATGGAGGAGGCGGC
CGAGTTGGAACGTTGTAAGGCACGGCGACAAAAGCGAGAGGTGCAGCGGC
GCATGAATCCGACAACCGCTCAGGACTTCGAGATTCTCTACAGTGAGCTT
GATCAATGGAGAGAAGCGGAAACGAAGCGTATCAAGCTTGCCGAACAAGG
CCAGAGTCGGAAGCTCGCGCTACAAGAGCTGCTTCACAAAGAGACGCGTC
TGCTCCAGACGATTGATCGTCTCAAGATGAAAGCGGCGCATGGGGGAAAG
ATTCTCTACAGTGAGCTTGATCAATGGAGAGAAGCGGAAACGAAGCGTAT
CAAGCTTGCCGAACAAGGCCAGAGTCGGAAGCTCGCGCTACAAGAGCTGC
TTCACAAAGAGACGCGTCTGCTCCAGACGATTGATCGTCTCAAGATGAAA
GCGGCGCATGGGGGAAAGGAACGCCGTACGAGACGCATGCTGGAGCTGAT
GTCGATGCCCAAAAAGTGGGAGATGGGCGACGGTGAAATCGCCGCTATTC
ATACACCGTGGACGGAAAGGGCGCAGGAGCTCCAGGCACGCCCACCTGAA
CGCCGTACGAGACGCATGCTGGAGCTGATGTCGATGCCCAAAAAGTGGGA
GATGGGCGACGGTGAAATCGCCGCTATTCATACACCGTGGACGGAAAGGG
CGCAGGAGCTCCAGGCACGCCCACCTGAGCTGTACGAGGCCCTCGAGGTG
CCCCTGCTGGGCGTTGAAGAACGCCTCAATGTGCTGCTGCACCTCAAGTG
GACCGTTAGAGAGTTTGACTGCCGATTAACGCGCGACATCGCGGAGCTTG
TAGACAGAGAGGCGGATCTCCTCAGCCGTGGACGGGGGGAGGCTAGTCTG
CGTCCCCTCCGCCAGAAAATTCGTAATTTGTACCTCCTATTTCTGGAAAC
GCCAGATTTCAACCCTGAGGTAACGCGCTTCGTGCGGTTGCCACCCAACT
ACGACAAGCTCACGATGGACGGTATCGCGGGGTTGACGGCAATTTCGTGT
TGAGAGCTGTACGAGGCCCTCGAGGTGCCCCTGCTGGGCGTTGAAGAACG
CCTCAATGTGCTGCTGCACCTCAAGTGGACCGTTAGAGAGTTTGACTGCC
GATTAACGCGCGACATCGCGGAGCTTGTAGACAGAGAGGCGGATCTCCTC
AGCCGTGGACGGGGGGAGGCTAGTCTGCGTCCCCTCCGCCAGAAAATTCG
TAATTTGTACCTCCTATTTCTGGAAACGCCAGATTTCAACCCTGAGGTAA
CGCGCTTCGTGCGGTTGCCACCCAACTACGACAAGCTCACGATGGACGGT
ATCGCGGGGTTGACGGCAATTTCGTGTTGA
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