mRNA_F-serratus_M_contig7249.18485.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7249.18485.1
Unique NamemRNA_F-serratus_M_contig7249.18485.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 184 bits (468), Expect = 8.420e-54
Identity = 85/100 (85.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLK--VNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYPSGHATQNGAFATVLK  + +DRGGDCYP+PV+PDDDGL+L+D+ GSCLT+EGEINKLAVNVAFGRQM+GIHYRFDG QGL+LGETITVRTL
Sbjct:  407 GSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTL 506          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 184 bits (467), Expect = 6.470e-53
Identity = 85/100 (85.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLK--VNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYPSGHATQNGAFATVLK  + +DRGG+C+PNPVFP DDGLEL+++EG+CLTYEGEINKLAVNVAFGRQM+GIHYRFDG QGL+LGETITVRTL
Sbjct:  526 GSPTHPSYPSGHATQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTL 625          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.200e-39
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLK--VNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYP+GHATQNGAFATVLK  V ++RG DC+ +P  PDD+GL L+D+ G CLT+EGEINKLAVNVAFGR M G+H+R D  QGL+LGE   VR L
Sbjct:  465 GSPTHPSYPAGHATQNGAFATVLKALVGLERGSDCFRDPKVPDDEGLTLLDFTGDCLTFEGEINKLAVNVAFGRNMCGVHWRIDSEQGLLLGEMAAVRIL 564          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.230e-37
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLK--VNVDRGGDCYPNPVFPDDDGLELVDYEG----SCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYP+GHATQNGAFATVLK  V ++RG  C+ +PVFPDD+GL L+ Y G    +CLT+EGEINKLAVNVA GR M+G+H+R D   GL+LGET  VR L
Sbjct:  472 GSPTHPSYPAGHATQNGAFATVLKALVGLERGSVCFNDPVFPDDEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGRNMLGVHWRIDSELGLLLGETAAVRIL 575          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 134 bits (338), Expect = 8.760e-35
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLK--VNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYPSGHA QNGAF+T+LK  V ++RG +C+ +PV P DDGL L+ ++G CLT+EGEINK A NVA GR  MG+H+R D  +GL+LGET+ VR L
Sbjct:  454 GSPTHPSYPSGHAVQNGAFSTILKALVGLERGLECFNDPVVPSDDGLTLLPFDG-CLTFEGEINKYAANVALGRNWMGVHWRMDAQEGLLLGETVAVRIL 552          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: A0A4Y7RBA7_9FIRM (PAP2 superfamily protein n=2 Tax=Pelotomaculum TaxID=191373 RepID=A0A4Y7RBA7_9FIRM)

HSP 1 Score: 107 bits (268), Expect = 3.140e-25
Identity = 55/98 (56.12%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            G PTHP+YPSGHAT  GA  T+LK          PNPV    DGL L+ YEG  LT  GE+NKLAVN+A GR   GIH+R DG++GL LGET+ +R L
Sbjct:  465 GCPTHPAYPSGHATYIGAGVTMLKAFFKESF-VLPNPVVAGPDGLSLLPYEGPPLTVGGELNKLAVNIAMGRDFAGIHWRTDGSEGLKLGETVAIRIL 561          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: S4XN83_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4XN83_SORCE)

HSP 1 Score: 106 bits (264), Expect = 9.360e-25
Identity = 54/98 (55.10%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            G PTHPSYP+ HATQ GA  TVLK   +      PNPV   DDGL LV Y G  LT  GE+NKLA N+A GR   G+HYR DG  G++LGE I +  L
Sbjct:  404 GCPTHPSYPAAHATQAGACVTVLKAFFNESF-VIPNPVVASDDGLSLVPYTGPALTVGGELNKLATNIAHGRDGGGVHYRSDGVAGMLLGEAIALSIL 500          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: A0A7Y4U9Q7_9BACT (Vanadium-dependent haloperoxidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4U9Q7_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 4.730e-24
Identity = 52/98 (53.06%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTH SY SGHAT  GA  TVLK   D   D   NPV P+ DG  LV Y G  LT  GE+NK+A+NVAFGR   G+H+R D   G+ LGE + +  L
Sbjct:   33 GSPTHSSYGSGHATVAGACVTVLKAFFDEN-DIVKNPVVPNADGTALVPYVGEPLTVLGELNKVAINVAFGRNGAGVHWRTDALNGMQLGEDVVIGIL 129          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: A0A5C7QWN2_9GAMM (Phosphatase PAP2 family protein (Fragment) n=1 Tax=Thiothrix sp. TaxID=1032 RepID=A0A5C7QWN2_9GAMM)

HSP 1 Score: 101 bits (252), Expect = 6.830e-24
Identity = 53/98 (54.08%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHPSYPSGHAT  GA ATVLK   +       N V   DDGL L+ Y  + LT  GEINKLA N+A GR   G+HYR D  QGL++GE + +  L
Sbjct:  195 GSPTHPSYPSGHATIAGACATVLKAFFNESF-VLNNSVIASDDGLSLLPYNSNALTVGGEINKLAGNIALGRDYAGVHYRQDAIQGLLVGEKVALNLL 291          
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Match: A0A1G8UTV2_9BACI (Uncharacterized protein n=1 Tax=Salimicrobium halophilum TaxID=86666 RepID=A0A1G8UTV2_9BACI)

HSP 1 Score: 102 bits (254), Expect = 2.080e-23
Identity = 52/98 (53.06%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDYEGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL 294
            GSPTHP+YP+GHAT  GA  T+LK   D      P+PV    DG  LV YEG  LT  GE+NKLA N+A GR   G+HYR DG  GL LGE + +  L
Sbjct:  384 GSPTHPAYPAGHATFIGAMVTMLKAFFDESF-VIPDPVLASSDGRSLVRYEGPDLTVGGELNKLAANIAIGRDAAGVHYRSDGINGLKLGEQVAIGIL 480          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7249.18485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PRXV_ASCNO8.420e-5485.00Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI6.470e-5385.00Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
B7ZGM6_9PHAE1.200e-3969.00Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE3.230e-3766.35Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA8.760e-3563.00Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
A0A4Y7RBA7_9FIRM3.140e-2556.12PAP2 superfamily protein n=2 Tax=Pelotomaculum Tax... [more]
S4XN83_SORCE9.360e-2555.10Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]
A0A7Y4U9Q7_9BACT4.730e-2453.06Vanadium-dependent haloperoxidase n=1 Tax=Acidobac... [more]
A0A5C7QWN2_9GAMM6.830e-2454.08Phosphatase PAP2 family protein (Fragment) n=1 Tax... [more]
A0A1G8UTV2_9BACI2.080e-2353.06Uncharacterized protein n=1 Tax=Salimicrobium halo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7249contigF-serratus_M_contig7249:3627..5210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.1
Seed ortholog evalue4.8e-21
Seed eggNOG ortholog1254432.SCE1572_09075
KEGG rclassRC00002
KEGG koko:K09824,ko:K19302
KEGG ReactionR05627
KEGG Pathwayko00550,map00550
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoesterase, PA-phosphatase related
EggNOG OGs1PMVX@1224,COG0671@1,COG0671@2
EC3.6.1.27
COG Functional cat.I
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7249.18485.1prot_F-serratus_M_contig7249.18485.1Fucus serratus malepolypeptideF-serratus_M_contig7249 3627..5210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.6277995-CDS-F-serratus_M_contig7249:3626..37051622932212.6277995-CDS-F-serratus_M_contig7249:3626..3705Fucus serratus maleCDSF-serratus_M_contig7249 3627..3705 -
1690964201.1849985-CDS-F-serratus_M_contig7249:3626..37051690964201.1849985-CDS-F-serratus_M_contig7249:3626..3705Fucus serratus maleCDSF-serratus_M_contig7249 3627..3705 -
1622932212.6458142-CDS-F-serratus_M_contig7249:4278..44111622932212.6458142-CDS-F-serratus_M_contig7249:4278..4411Fucus serratus maleCDSF-serratus_M_contig7249 4279..4411 -
1690964201.1978922-CDS-F-serratus_M_contig7249:4278..44111690964201.1978922-CDS-F-serratus_M_contig7249:4278..4411Fucus serratus maleCDSF-serratus_M_contig7249 4279..4411 -
1622932212.6652968-CDS-F-serratus_M_contig7249:5128..52101622932212.6652968-CDS-F-serratus_M_contig7249:5128..5210Fucus serratus maleCDSF-serratus_M_contig7249 5129..5210 -
1690964201.2087252-CDS-F-serratus_M_contig7249:5128..52101690964201.2087252-CDS-F-serratus_M_contig7249:5128..5210Fucus serratus maleCDSF-serratus_M_contig7249 5129..5210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7249.18485.1

>prot_F-serratus_M_contig7249.18485.1 ID=prot_F-serratus_M_contig7249.18485.1|Name=mRNA_F-serratus_M_contig7249.18485.1|organism=Fucus serratus male|type=polypeptide|length=98bp
GSPTHPSYPSGHATQNGAFATVLKVNVDRGGDCYPNPVFPDDDGLELVDY
EGSCLTYEGEINKLAVNVAFGRQMMGIHYRFDGTQGLILGETITVRTL
back to top

mRNA from alignment at F-serratus_M_contig7249:3627..5210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7249.18485.1 ID=mRNA_F-serratus_M_contig7249.18485.1|Name=mRNA_F-serratus_M_contig7249.18485.1|organism=Fucus serratus male|type=mRNA|length=1584bp|location=Sequence derived from alignment at F-serratus_M_contig7249:3627..5210- (Fucus serratus male)
GGATCACCAACGCACCCTTCCTACCCGTCCGGCCACGCTACCCAAAACGG AGCATTTGCTACGGTTTTGAAGGTGAACGTCGGTTGGTTGATGTACGTGA TTTGGTGGTGTACTTTGACTTCGCTTTGCAGACAATTTCATTCTACAGTG GTACTCAAGGAGTGGGAAAGTAACCAAGTAGACTAGCCAGCGCTGACCAA GCGTCTAATGGGAAAATATCCGCCGGTCGTAAACGTAAGTATTTGGTCTG ATTCCTAGGTTGGGACTGAAAAATGTTTTCTTCGTCGATTTCTGAAGAAC CTGAGGATAGAGGTAATATGGTTGACCGAATAAATCTAGCGGCCCTGCGC ACTCTTTTTTCGAAAGGGACCCCGACGAGTTGAAAATTATTAAATATATA GGAGCCAAAATAAGAAGGTATGCAGAACAGTAGCGTTGGCAAGGGGCATC AGACTTCTCGGAGTGAAAGTACGGGGTCCACTTCGGGTCCCCTCAACTTA TTTTTGTAGAGGCCAAAACTTGACCATTAGACTAACCACCCTGTTAATAG TTAATGAATGAAGTCACGTAGTTCTTCTCATATAGAGAATTCACCCTGCG ATGTTAGATTTGAACTGGTGCGCTATACGTGGGCGAGTACATCGGCGTTG ATACTGAAACAATTTTTTGCCGTTAGGCCCTCGATAACCACACCACCCCC CCTGCCGTCCCTTGTTATCACTTGTCTTCCCTACCATGGCTGTGTTTTGC TTCCTCCACGGGAAACCGTAATATGTGCACCAGGCTCTTATTGGCCTAGA TCGAGGGGGTGACTGCTACCCCAACCCCGTGTTCCCCGACGATGACGGCC TGGAACTAGTTGACTACGAAGGCAGCTGCCTCACCTATGAGGGAGAGATC AACAAGCTCGCAGTTAACGTCGCATTCGGGAGGTGAAAATTGCGGAGGCC ATGCGAGTTTCGTACAGATCTGATCCCACTGTACTCTTCGAAGTTCTGCT TTGTGTAATATAAAACATGTGTCGTAACGAGTCTGGATCATTTTGGGATA GCAAAGCGAACTTTTACGCGCGAGCGTGTGCATTGGAGCAGCCCGAGACC GCGTATTACTTTGCATAGTCATCGCTATTCATATCGAGGCGTCGACTTTC GGTCAGTTATTCATAGGTCATTCCGGGAGTCTTCAACAAATAAACTCACT ACGAGAGTATATCATACAAAGGTATACATTGCAAACATACATAAAAATTG AACGGGAATGTTGGGGAGCATATAAAATAGATAGTACCCGTACAGTTTAT ATACTTCATGCCTATACGAGGTACTAAGGAAATGAAGACATGACAGATTT TCTCGTCACCTTGCTGGAGTGACCTGCGCAGTAAACCCTCCAAGGCAGAA CTTCATACTTAGGGGCTAAGCAGGTTGATATTTAAAACGCTAGCGTGGCA GTTTAGTGGATGTTTGACAGTCATGTGTCACGTTTTTTCCGTTTGGTGAT TACAGGCAGATGATGGGCATCCATTATCGGTTCGACGGTACTCAAGGCCT GATCCTCGGAGAGACAATTACCGTACGAACACTT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig7249:3627..5210-

>mRNA_F-serratus_M_contig7249.18485.1 ID=mRNA_F-serratus_M_contig7249.18485.1|Name=mRNA_F-serratus_M_contig7249.18485.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig7249:3627..5210- (Fucus serratus male)
GGATCACCAACGCACCCTTCCTACCCGTCCGGCCACGCTACCCAAAACGG
AGCATTTGCTACGGTTTTGAAGGTGAACGTCGGGATCACCAACGCACCCT
TCCTACCCGTCCGGCCACGCTACCCAAAACGGAGCATTTGCTACGGTTTT
GAAGGTGAACGTCGATCGAGGGGGTGACTGCTACCCCAACCCCGTGTTCC
CCGACGATGACGGCCTGGAACTAGTTGACTACGAAGGCAGCTGCCTCACC
TATGAGGGAGAGATCAACAAGCTCGCAGTTAACGTCGCATTCGGGAGATC
GAGGGGGTGACTGCTACCCCAACCCCGTGTTCCCCGACGATGACGGCCTG
GAACTAGTTGACTACGAAGGCAGCTGCCTCACCTATGAGGGAGAGATCAA
CAAGCTCGCAGTTAACGTCGCATTCGGGAGGCAGATGATGGGCATCCATT
ATCGGTTCGACGGTACTCAAGGCCTGATCCTCGGAGAGACAATTACCGTA
CGAACACTTGCAGATGATGGGCATCCATTATCGGTTCGACGGTACTCAAG
GCCTGATCCTCGGAGAGACAATTACCGTACGAACACTT
back to top