mRNA_F-serratus_M_contig723.18479.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig723.18479.1
Unique NamemRNA_F-serratus_M_contig723.18479.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig723.18479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig723contigF-serratus_M_contig723:354848..355128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size137
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932210.5928087-CDS-F-serratus_M_contig723:354847..3549211622932210.5928087-CDS-F-serratus_M_contig723:354847..354921Fucus serratus maleCDSF-serratus_M_contig723 354848..354921 +
1690964200.14475-CDS-F-serratus_M_contig723:354847..3549211690964200.14475-CDS-F-serratus_M_contig723:354847..354921Fucus serratus maleCDSF-serratus_M_contig723 354848..354921 +
1622932210.6249096-CDS-F-serratus_M_contig723:355067..3551281622932210.6249096-CDS-F-serratus_M_contig723:355067..355128Fucus serratus maleCDSF-serratus_M_contig723 355068..355128 +
1690964200.154255-CDS-F-serratus_M_contig723:355067..3551281690964200.154255-CDS-F-serratus_M_contig723:355067..355128Fucus serratus maleCDSF-serratus_M_contig723 355068..355128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig723.18479.1prot_F-serratus_M_contig723.18479.1Fucus serratus malepolypeptideF-serratus_M_contig723 354848..355128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig723.18479.1

>prot_F-serratus_M_contig723.18479.1 ID=prot_F-serratus_M_contig723.18479.1|Name=mRNA_F-serratus_M_contig723.18479.1|organism=Fucus serratus male|type=polypeptide|length=45bp
IEEGKAPFEPIYRKTQSHLESNWKTHNYNRNERETLSGVPNIPRP
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mRNA from alignment at F-serratus_M_contig723:354848..355128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig723.18479.1 ID=mRNA_F-serratus_M_contig723.18479.1|Name=mRNA_F-serratus_M_contig723.18479.1|organism=Fucus serratus male|type=mRNA|length=281bp|location=Sequence derived from alignment at F-serratus_M_contig723:354848..355128+ (Fucus serratus male)
ATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGTGAGTGACTTAAGCACTTTCATTTG
TTTTGTCGCGTCCTGCTGGTCAATCTTTTGTGTCGCGCGTCCGGACGAAG
TACGTGTATTGTCAGCGGACACGTGTTTCACCTGTACTCCCTTTCGGCGG
CGCTGATATGTTTTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGAC
GCTGAGCGGAGTGCCGAACATACCTCGCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig723:354848..355128+

>mRNA_F-serratus_M_contig723.18479.1 ID=mRNA_F-serratus_M_contig723.18479.1|Name=mRNA_F-serratus_M_contig723.18479.1|organism=Fucus serratus male|type=CDS|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig723:354848..355128+ (Fucus serratus male)
ATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACATAGAAGAGGGCAAGGCGCCTTTCGA
ACCTATTTACAGGAAGACGCAGTCGCATCTCGAGTCGAACTGGAAAACGC
ACAACTACAACCGTAACGAGAGGGAGACGCTGAGCGGAGTGCCGAACATA
CCTCGCCCGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCGGAG
TGCCGAACATACCTCGCCCG
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