mRNA_F-serratus_M_contig721.18460.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI) HSP 1 Score: 218 bits (556), Expect = 4.190e-63 Identity = 107/155 (69.03%), Postives = 126/155 (81.29%), Query Frame = 1
Query: 1 SMCPESMGSGL--LVDDTESGRVHRGHAVAKIKGLLGQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAWAPP 459
SMCP +MGSGL +++TE V R AV IKGLL Q+K NI++PD SLC+DLQR+AELR VFREPELLE+V E+L GKG KT+IQ SGGRE P AQAA CA+L A LKALPEWP+A++++YMHDALGGR WASHSACK FVDN+RTAWAPP
Sbjct: 23 SMCPATMGSGLQAALNETEDSGVLRTKAVDTIKGLLQQVKENIKNPDRSLCSDLQRMAELRPKVFREPELLESVGEVLTGKGAKTAIQSSGGREAPCVAQAAACAMLTAALKALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPP 177
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.660e-52 Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 1
Query: 97 LLGQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAWAPP 459
L+ + ANIQ+PD SLC+DLQR+AELR VFREPELLEAV E+L GKG KT+IQ SGG+E P AQAA CA+L A LKALPEWP+A++++YMHDALGGR WASHSACK FVDN+RTAWAPP
Sbjct: 16 LVVAVPANIQNPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGGQEAPCVAQAAACAMLTAALKALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPP 136
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI001490619C (integrator complex subunit 1 isoform X1 n=1 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI001490619C) HSP 1 Score: 71.6 bits (174), Expect = 1.290e-11 Identity = 45/154 (29.22%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+GLL Q+K N PD++L L +A+++ VF ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W S CK+FVDN++TA+
Sbjct: 110 SVVPIEVSPAVLLDEIEAAESEGNDD--RIEGLLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNVFATEGIIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSSHCKIFVDNIQTAF 256
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: A0A6P8F1N8_CLUHA (integrator complex subunit 1 isoform X1 n=4 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8F1N8_CLUHA) HSP 1 Score: 71.2 bits (173), Expect = 1.760e-11 Identity = 45/155 (29.03%), Postives = 78/155 (50.32%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAWA 453
S+ P + +L+D+ E+ +I+GLL Q+K N PD++L L +A+++ VF ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W S CK+FVDN++TA++
Sbjct: 108 SVVPIEVPPAVLLDEIEAAEAEGNDD--RIEGLLCGAVKQLKLNRAKPDITLYLSLMFLAKIKPNVFATEGVIEALCSLL-RRDTSINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSSHCKVFVDNIQTAFS 255
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI001CD82B90 (integrator complex subunit 1 isoform X1 n=3 Tax=Carangaria TaxID=1489904 RepID=UPI001CD82B90) HSP 1 Score: 71.2 bits (173), Expect = 1.760e-11 Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+GLL Q+K N PD++L L +A+++ VF ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W S CK+FVDNL+TA+
Sbjct: 110 SVVPIEVSPVVLLDEIEASESEGNDD--RIEGLLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNVFATEGIIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSSHCKIFVDNLQTAF 256
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: A0A3Q3GD68_9LABR (Integrator complex subunit 1 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3GD68_9LABR) HSP 1 Score: 70.1 bits (170), Expect = 4.430e-11 Identity = 44/154 (28.57%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+GLL Q+K N PD++L L +A+++ VF ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W S CK+FV+N++TA+
Sbjct: 110 SVVPIEVSPAVLLDEIEAAESEGNDD--RIEGLLCGAVKQLKLNRAKPDITLYLSLMFLAKIKPNVFATEGIIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSSHCKIFVENIQTAF 256
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI0009B2EC67 (LOW QUALITY PROTEIN: integrator complex subunit 1 n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0009B2EC67) HSP 1 Score: 70.1 bits (170), Expect = 4.430e-11 Identity = 44/154 (28.57%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+GLL Q+K N PD++L L +A+++ VF ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W S CK+FV+N++TA+
Sbjct: 110 SVVPIEVSPAVLLDEIEAAESEGNDD--RIEGLLCGAVKQLKLNRAKPDITLYLSLMFLAKIKPNVFATEGIIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSSHCKIFVENIQTAF 256
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI001F03ED89 (integrator complex subunit 1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03ED89) HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10 Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1
Query: 88 IKGLLGQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
+ G L ++ N PDL +C L + + R +FR + E ++ +L +S+ G R P A C ILL + WP + ++VY+ D+LG R W + C+LFV+NL TA+
Sbjct: 140 LTGGLKVLRMNRSKPDLPMCLSLFCLVKRRSHLFRSHRITEFLTSLLKRD---SSVTLKGARPSPAVPIIA-CNILLCAFQDEQNWPESFIKVYVEDSLGDRIWVENERCRLFVENLLTAF 256
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI000B4C3438 (integrator complex subunit 1 isoform X2 n=1 Tax=Lonchura striata domestica TaxID=299123 RepID=UPI000B4C3438) HSP 1 Score: 65.9 bits (159), Expect = 1.320e-9 Identity = 42/154 (27.27%), Postives = 75/154 (48.70%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+G+L Q+K N PD +L L +A+++ +F ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W CK+FVDN++TA+
Sbjct: 111 SVIPIEVVPTVLLDEIEAAEAEGNDD--RIEGVLCGAVKQLKMNRAKPDTTLYLSLMYLAKIKPNIFATEGVIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKMFVDNIQTAF 257
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Match: UPI000B4CB425 (integrator complex subunit 1 isoform X1 n=1 Tax=Lonchura striata domestica TaxID=299123 RepID=UPI000B4CB425) HSP 1 Score: 65.9 bits (159), Expect = 1.320e-9 Identity = 42/154 (27.27%), Postives = 75/154 (48.70%), Query Frame = 1
Query: 1 SMCPESMGSGLLVDDTESGRVHRGHAVAKIKGLL----GQIKANIQDPDLSLCADLQRVAELRQTVFREPELLEAVSEILVGKGVKTSIQPSGGREEPRHAQAAVCAILLATLKALPEWPVAIVEVYMHDALGGRHWASHSACKLFVDNLRTAW 450
S+ P + +L+D+ E+ +I+G+L Q+K N PD +L L +A+++ +F ++EA+ +L + + + G C +L+A + WP V+VY+ D+LG R W CK+FVDN++TA+
Sbjct: 111 SVIPIEVVPTVLLDEIEAAEAEGNDD--RIEGVLCGAVKQLKMNRAKPDTTLYLSLMYLAKIKPNIFATEGVIEALCSLL-RRDASINFKAKGNS----LVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVDSPHCKMFVDNIQTAF 257 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig721.18460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig721.18460.1 >prot_F-serratus_M_contig721.18460.1 ID=prot_F-serratus_M_contig721.18460.1|Name=mRNA_F-serratus_M_contig721.18460.1|organism=Fucus serratus male|type=polypeptide|length=152bp MCPESMGSGLLVDDTESGRVHRGHAVAKIKGLLGQIKANIQDPDLSLCADback to top mRNA from alignment at F-serratus_M_contig721:336497..338758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig721.18460.1 ID=mRNA_F-serratus_M_contig721.18460.1|Name=mRNA_F-serratus_M_contig721.18460.1|organism=Fucus serratus male|type=mRNA|length=2262bp|location=Sequence derived from alignment at F-serratus_M_contig721:336497..338758+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig721:336497..338758+ >mRNA_F-serratus_M_contig721.18460.1 ID=mRNA_F-serratus_M_contig721.18460.1|Name=mRNA_F-serratus_M_contig721.18460.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig721:336497..338758+ (Fucus serratus male)back to top |