mRNA_F-serratus_M_contig7137.18349.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7137.18349.1
Unique NamemRNA_F-serratus_M_contig7137.18349.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D7FJM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM6_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.650e-12
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S GR LVLVGDKGY  ++EM+G RDPHIAYHGSLSCMV + A+
Sbjct:  586 SGGRGLVLVGDKGYMKDEEMAGDRDPHIAYHGSLSCMVNLDAL 628
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A835YZ46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ46_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.080e-9
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            +RG+ +VL GDKG+    EM GQRDPHIA HGS SCMV   A+
Sbjct:  198 ARGQLVVLAGDKGHTQLSEMDGQRDPHIALHGSFSCMVNFYAL 240
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A812W741_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W741_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S+GRC++L+GDK Y+   E+ G RDPHIA HGS S MV + AV
Sbjct:  309 SKGRCMLLLGDKAYSKLSELEGVRDPHIALHGSFSLMVNLHAV 351
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D7FK69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK69_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.620e-8
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    7 GRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMV 114
            G+ LV+ GDKGY  + E+ G RDPH+A HGS SCMV
Sbjct:   77 GKALVIAGDKGYVHDSELEGTRDPHLAVHGSFSCMV 112
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: D8LQH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.640e-8
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    7 GRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMV 114
            G+ LV+ GDKGY  + E+ G RDPH+A HGS SCMV
Sbjct:  290 GKALVIAGDKGYVHDSELEGTRDPHLAVHGSFSCMV 325
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: B9Q5A1_TOXGV (TPR domain-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9Q5A1_TOXGV)

HSP 1 Score: 52.8 bits (125), Expect = 8.320e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S  R   L+GDKGY +  E +G+RDPHIA HGS+S M+ + AV
Sbjct:  367 SGNRLFCLIGDKGYPTADEFAGERDPHIAIHGSISFMLNLHAV 409
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: F0VJQ5_NEOCL (Putative TPR domain-containing protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VJQ5_NEOCL)

HSP 1 Score: 51.6 bits (122), Expect = 2.130e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S  R   L+GDKGY +  E  G+RDPHIA HGS+S M+ + AV
Sbjct:  357 SGNRLFCLIGDKGYPTADEFVGERDPHIAIHGSISFMLNLHAV 399
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A2C6KP39_9APIC (Tpr domain-containing n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KP39_9APIC)

HSP 1 Score: 51.2 bits (121), Expect = 2.910e-6
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 RCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            +   L+GDKGY + +E SG+RDPHIA HGS+S M+ + ++
Sbjct:  471 QLFCLIGDKGYPTAEEFSGERDPHIAIHGSISFMLNLHSI 510
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A2A9MH19_9APIC (Tetratricopeptide repeat-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MH19_9APIC)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   10 RCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            R   L+GDKGY +  E  G+RDPHIA HGS+S M+ + AV
Sbjct:  337 RLFCLIGDKGYPTADEFVGERDPHIAIHGSISFMLNLHAV 376
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BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Match: A0A7S3K0C6_9STRA (Type II protein arginine methyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0C6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV 129
            S+GR LVL GDKG  + ++  G  DPHIA HGS S MV   A+
Sbjct:  264 SKGRALVLSGDKGNNNPEQFRGLMDPHIAVHGSFSVMVNYHAI 306
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7137.18349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FJM6_ECTSI1.650e-1272.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZ46_9STRA4.080e-960.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812W741_9DINO1.040e-858.14Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
D7FK69_ECTSI1.620e-861.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQH4_ECTSI3.640e-861.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B9Q5A1_TOXGV8.320e-753.49TPR domain-containing protein n=15 Tax=Toxoplasma ... [more]
F0VJQ5_NEOCL2.130e-653.49Putative TPR domain-containing protein n=1 Tax=Neo... [more]
A0A2C6KP39_9APIC2.910e-650.00Tpr domain-containing n=1 Tax=Cystoisospora suis T... [more]
A0A2A9MH19_9APIC2.920e-655.00Tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A7S3K0C6_9STRA1.400e-553.49Type II protein arginine methyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7137contigF-serratus_M_contig7137:22114..22242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue8.4e-10
Seed eggNOG ortholog2880.D7FJM6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs28JR9@1,2QS4P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932191.099223-CDS-F-serratus_M_contig7137:22113..222421622932191.099223-CDS-F-serratus_M_contig7137:22113..22242Fucus serratus maleCDSF-serratus_M_contig7137 22114..22242 +
1690964191.8446748-CDS-F-serratus_M_contig7137:22113..222421690964191.8446748-CDS-F-serratus_M_contig7137:22113..22242Fucus serratus maleCDSF-serratus_M_contig7137 22114..22242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7137.18349.1prot_F-serratus_M_contig7137.18349.1Fucus serratus malepolypeptideF-serratus_M_contig7137 22114..22242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7137.18349.1

>prot_F-serratus_M_contig7137.18349.1 ID=prot_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=polypeptide|length=43bp
SRGRCLVLVGDKGYASEQEMSGQRDPHIAYHGSLSCMVRVCAV
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mRNA from alignment at F-serratus_M_contig7137:22114..22242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7137.18349.1 ID=mRNA_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=mRNA|length=129bp|location=Sequence derived from alignment at F-serratus_M_contig7137:22114..22242+ (Fucus serratus male)
AGCCGCGGGCGCTGCCTGGTGCTGGTGGGCGACAAAGGTTACGCCAGCGA
GCAAGAGATGAGCGGGCAGAGAGATCCGCACATCGCCTACCACGGCTCTC
TGTCGTGCATGGTGAGAGTGTGCGCTGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7137:22114..22242+

>mRNA_F-serratus_M_contig7137.18349.1 ID=mRNA_F-serratus_M_contig7137.18349.1|Name=mRNA_F-serratus_M_contig7137.18349.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig7137:22114..22242+ (Fucus serratus male)
AGCCGCGGGCGCTGCCTGGTGCTGGTGGGCGACAAAGGTTACGCCAGCGA
GCAAGAGATGAGCGGGCAGAGAGATCCGCACATCGCCTACCACGGCTCTC
TGTCGTGCATGGTGAGAGTGTGCGCTGTTAGCCGCGGGCGCTGCCTGGTG
CTGGTGGGCGACAAAGGTTACGCCAGCGAGCAAGAGATGAGCGGGCAGAG
AGATCCGCACATCGCCTACCACGGCTCTCTGTCGTGCATGGTGAGAGTGT
GCGCTGTT
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