mRNA_F-serratus_M_contig7118.18330.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7118.18330.1
Unique NamemRNA_F-serratus_M_contig7118.18330.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5KBE6_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBE6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.090e-39
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVAL YFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHR ASIIQQIKDFSC
Sbjct:   22 LTVAGNAMHSQRTKHVALWYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRLASIIQQIKDFSC 89
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.360e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct:  266 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 333
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5K798_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K798_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.930e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct:  276 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 343
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5JKZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.370e-38
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQ IKDFSC
Sbjct:  207 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQSIKDFSC 274
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.700e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct:  426 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 493
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5KEW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEW7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.440e-37
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATK+LPKHRFASIIQ+IKDFSC
Sbjct:  259 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKHLPKHRFASIIQRIKDFSC 326
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.850e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct:  634 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 701
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.500e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct: 1021 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 1088
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 8.390e-36
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHV LRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC
Sbjct:  790 LTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 857
[Close]
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Match: A0A6H5L5K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K4_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.190e-35
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 LTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFSC 204
            LTVAGNAMHSQRTKHVALRYFFIREL LRGQITLHHRPSEHQLADIATK LPKHRFASIIQQI DFSC
Sbjct:  266 LTVAGNAMHSQRTKHVALRYFFIRELALRGQITLHHRPSEHQLADIATKNLPKHRFASIIQQINDFSC 333
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7118.18330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBE6_9PHAE4.090e-3997.06Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S5_9PHAE2.360e-38100.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K798_9PHAE2.930e-38100.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKZ9_9PHAE3.370e-3898.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE3.700e-37100.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEW7_9PHAE4.440e-3797.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.850e-36100.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE2.500e-36100.00Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KE92_9PHAE8.390e-3698.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5K4_9PHAE2.190e-3595.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7118contigF-serratus_M_contig7118:1..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size301
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7118.18330.1prot_F-serratus_M_contig7118.18330.1Fucus serratus malepolypeptideF-serratus_M_contig7118 22..207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932188.6306407-UTR-F-serratus_M_contig7118:0..211622932188.6306407-UTR-F-serratus_M_contig7118:0..21Fucus serratus maleUTRF-serratus_M_contig7118 1..21 +
1690964190.7576718-UTR-F-serratus_M_contig7118:0..211690964190.7576718-UTR-F-serratus_M_contig7118:0..21Fucus serratus maleUTRF-serratus_M_contig7118 1..21 +
1622932188.6605985-UTR-F-serratus_M_contig7118:207..3011622932188.6605985-UTR-F-serratus_M_contig7118:207..301Fucus serratus maleUTRF-serratus_M_contig7118 208..301 +
1690964190.7782428-UTR-F-serratus_M_contig7118:207..3011690964190.7782428-UTR-F-serratus_M_contig7118:207..301Fucus serratus maleUTRF-serratus_M_contig7118 208..301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932188.6429524-CDS-F-serratus_M_contig7118:21..2071622932188.6429524-CDS-F-serratus_M_contig7118:21..207Fucus serratus maleCDSF-serratus_M_contig7118 22..207 +
1690964190.769099-CDS-F-serratus_M_contig7118:21..2071690964190.769099-CDS-F-serratus_M_contig7118:21..207Fucus serratus maleCDSF-serratus_M_contig7118 22..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7118.18330.1

>prot_F-serratus_M_contig7118.18330.1 ID=prot_F-serratus_M_contig7118.18330.1|Name=mRNA_F-serratus_M_contig7118.18330.1|organism=Fucus serratus male|type=polypeptide|length=62bp
MHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFA
SIIQQIKDFSC*
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mRNA from alignment at F-serratus_M_contig7118:1..301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7118.18330.1 ID=mRNA_F-serratus_M_contig7118.18330.1|Name=mRNA_F-serratus_M_contig7118.18330.1|organism=Fucus serratus male|type=mRNA|length=301bp|location=Sequence derived from alignment at F-serratus_M_contig7118:1..301+ (Fucus serratus male)
CTGACAGTGGCCGGGAATGCCATGCACTCTCAACGCACGAAGCACGTGGC
CCTGAGGTACTTTTTCATCCGGGAACTAGTACTGCGGGGACAAATCACTC
TTCACCACCGGCCCAGCGAACACCAGTTGGCTGATATCGCGACCAAGTAC
CTCCCGAAGCACCGATTCGCCTCCATCATTCAGCAAATCAAGGACTTCTC
GTGTTGATCGAAGATCTGTGAAGCTTCCTTCCATACGCGCCATACCAGAA
GGAATTTAGTTTCGATACGATGCCAACGGAGGGGTCGAGGTAGAAAAGGA
T
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Coding sequence (CDS) from alignment at F-serratus_M_contig7118:1..301+

>mRNA_F-serratus_M_contig7118.18330.1 ID=mRNA_F-serratus_M_contig7118.18330.1|Name=mRNA_F-serratus_M_contig7118.18330.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig7118:1..301+ (Fucus serratus male)
ATGCACTCTCAACGCACGAAGCACGTGGCCCTGAGGTACTTTTTCATCCG
GGAACTAGTACTGCGGGGACAAATCACTCTTCACCACCGGCCCAGCGAAC
ACCAGTTGGCTGATATCGCGACCAAGTACCTCCCGAAGCACCGATTCGCC
TCCATCATTCAGCAAATCAAGGACTTCTCGTGTTGAATGCACTCTCAACG
CACGAAGCACGTGGCCCTGAGGTACTTTTTCATCCGGGAACTAGTACTGC
GGGGACAAATCACTCTTCACCACCGGCCCAGCGAACACCAGTTGGCTGAT
ATCGCGACCAAGTACCTCCCGAAGCACCGATTCGCCTCCATCATTCAGCA
AATCAAGGACTTCTCGTGTTGA
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