mRNA_F-serratus_M_contig7108.18318.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7108.18318.1
Unique NamemRNA_F-serratus_M_contig7108.18318.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7108.18318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7108contigF-serratus_M_contig7108:17292..21973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size578
Cds size576
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932186.0168054-CDS-F-serratus_M_contig7108:17291..176531622932186.0168054-CDS-F-serratus_M_contig7108:17291..17653Fucus serratus maleCDSF-serratus_M_contig7108 17292..17653 +
1690964189.3674538-CDS-F-serratus_M_contig7108:17291..176531690964189.3674538-CDS-F-serratus_M_contig7108:17291..17653Fucus serratus maleCDSF-serratus_M_contig7108 17292..17653 +
1622932186.0383055-CDS-F-serratus_M_contig7108:21759..219731622932186.0383055-CDS-F-serratus_M_contig7108:21759..21973Fucus serratus maleCDSF-serratus_M_contig7108 21760..21973 +
1690964189.3795142-CDS-F-serratus_M_contig7108:21759..219731690964189.3795142-CDS-F-serratus_M_contig7108:21759..21973Fucus serratus maleCDSF-serratus_M_contig7108 21760..21973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7108.18318.1prot_F-serratus_M_contig7108.18318.1Fucus serratus malepolypeptideF-serratus_M_contig7108 17292..21973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7108.18318.1

>prot_F-serratus_M_contig7108.18318.1 ID=prot_F-serratus_M_contig7108.18318.1|Name=mRNA_F-serratus_M_contig7108.18318.1|organism=Fucus serratus male|type=polypeptide|length=192bp
DPIAVQFKNDQLASMAAAKRQSEQSCLLEASPSTEASNERLSLSQLATQR
LGSLKWLMSRDLTVSPLGKQSAGGTPGSKAGGDSGDRGTTWRSYTVDMSD
APSSVSETGTDGTVSKAPERSHSNHHRTRAAPGQTGSTAKRRHGKRAPYR
LSIDLERAPEGSSVWVKRRRSSPLVAAPGSSVSPTEPQDGE*
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mRNA from alignment at F-serratus_M_contig7108:17292..21973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7108.18318.1 ID=mRNA_F-serratus_M_contig7108.18318.1|Name=mRNA_F-serratus_M_contig7108.18318.1|organism=Fucus serratus male|type=mRNA|length=4682bp|location=Sequence derived from alignment at F-serratus_M_contig7108:17292..21973+ (Fucus serratus male)
GACCCGATTGCTGTCCAATTCAAAAACGATCAATTAGCTTCCATGGCGGC
CGCAAAGCGTCAGAGCGAGCAATCCTGTCTGCTAGAGGCTTCACCGTCAA
CTGAGGCCTCAAACGAAAGACTCTCCCTCTCCCAGCTGGCAACCCAGAGA
CTAGGCTCTCTGAAATGGTTGATGTCCAGAGATCTGACTGTAAGCCCACT
GGGCAAGCAATCAGCTGGAGGGACACCGGGTTCCAAGGCGGGTGGCGACT
CTGGTGATCGAGGGACTACGTGGCGCTCTTACACCGTGGATATGAGTGAT
GCTCCGTCCTCTGTGTCCGAGACAGGAACCGATGGCACAGTCTCCAAGGC
GCCAGAACGCAGGTTTGTGGGTTATTTTTACTGTAGTGGAGCTGTACGTA
TACATTGCAAAGGCAACACCGGTTTCTGGAACTACCTTGAGGTTTTCTGA
ACAGTCCTTGTGCAAGCAGACTCTCGGCAGTGAACGCCATCGGCACGCAC
TTGCGTGGCCTGATAAACACGGGACTAACCCGATGGCGTATGGCGACATA
AATAAATGGACGCCGCCGCGGAAAATCCGGAGGAATCCCGTGAGTGTGGA
GACTGGGCAGACTGGCGCGGGACGGGACGGGACGGCGGAACCCGTCTCGC
AAGACCAAAATCTCAGGCGCGAACGGGGACAGGGAAATTTTAAATTTCTC
TGTTCAGCTGACCACGAGCAGGATTGGTACTTACCGGTTGATACATACCT
GGTACTCTTGCTATATGTGATGACCATACATCAGTTCTTTACACAGCAGT
GTCTGCAACGATTAGACTTGACAAAACCCGCCGCGCGAATGAATCCCGAC
CCAACTGATTTTGCTTCAGCGCGGGTATTCAGGAGTAGAGGTAGACCAAC
AAAACTGTACCGCTGTGCTATATTTCCATGGGACACCCGAGGCAAACCCC
TCTAACGGTCGCTGCTATTGGTGTTTGGTGTGACATCTCTGCTCTACGCG
CTGCTTGTGGATGCCGACAGAATCTTGAATCTTGTTGGCAGCCTTCAGTA
GTACTGCTGTAGTACAACTATTAAATACAGCAGAGGTTTCGTTTGCTGTG
ATGGCTGCACGCCGTACATACAGCAGTGCTGCGTCGACCCGGCGTGTCTA
CTGCTCCTGCTTTCAGCGATGGCTTCGGCACTTCGTTTGCCGTTCGTTGG
CGAACGGACGATTCGAAACGTGTTATACTGTACTACAAAAATGTACTTGA
ACACTGAAACAGTTGCGCCTTCAACTGCATCGATGCGCTTATATTTCACA
ATCGGAGCGCGACGTTCAGCTATTAATATTAACAGCGCTGACCACCGCGC
GAGATCCCATACCTACGTGCCACCTCCCAGATTTATCTTCCTCCCCCGAC
AGGGAAGCAACTGGCAGAATCACGGACTTGTTGTATCAGTCTTGACGTCG
GCCGCTGTCGGGCTTCCTGGCAGAACCGTTGTGCTTTATTATCGATTAAA
CGCACTTAGAGCGTGCTGTCCCTGCAACTCTGAACTGGGGGACTACGATT
GGCCAAAATCATCTACGAGTTCCATATTAGCCGCAGAGTTTGCACCAGAT
AAATGTCTTCACGCTTGCGCCCTCGAAGTTTGAAGTTGTAATGGAAGAGC
TGACTCGAGATGGGATAGCCGAGCCCGTATCGCGAGACCCAATTCTCAGA
CGTGGCAATCTTACGTTTTTAGTGTCCGTGGTGACGACACACAACTGTTA
TATATTAATAATAGCATATCACGATGTCCTATACAGTATATTCACAACAG
TACAGCAGTATTGACAAGATTTTAAAAAAAACGACCTCTCTCACGACTCC
GCACGAATGGTGAGGAGGTAGGTTACTATGAAAACCAGTTTAACTTGGGC
AAAGCAGGTGGAACGTCCATACCTGGTATGTTATAATAGTGATGTCATGA
CGTCAACTCTATTTTCAAGGAATTTAAAACAACCAGTTCAACTTGAGCAA
CAGCAGATGGATCGTGCATACCAGTATGTAGTGATGTCATGATGTCCACT
CTATTTCCAAGTAATTTAAAGCAACACGTGGAGGGTAGGTATTAATAGCA
ATGTGGTGATGTCAAATGCTCTTCAACAAGGCAGATAGATATCTACTTGA
CGCTTTGGGATACACACGCACCCATTCATGGCAAAGCTAACTGCTGCAGA
ATTGCATTGAATCTATTCAACGCGCCTATACTGTACCTTCTGAGCATCCC
CCAGTCGCTGTACACACACACACACACACACTAATAATAGCTCGGTTTGC
GACAATACAACAGTTGAATTTCGGAGTGGTGCTCGCTCGGCATGGGTTCT
CTGAACGCCGAACTTCACTGGAGACGATGATGAGATGCGTCTTTGGTGGG
AAAGAGAGGCAAATATTAATTGCTCCGTGGTGACCTGCTGAGGCAGCACT
CGTTCGGAACTACCTTGAGGCTTACTGGCCCTGTGCCGGCGGACTCTCGG
CAGTTGTTGTTGTTGATTCACACATTCAGCGCATTGTTCTTGCAACTGAA
GAAACTACGGTGACACAACAAGTCAGCCATAGATCTATCAAATGCTAATC
CCGCTTGTGGTCACAAATAGGTACAAAGGTCAACGGGCCACATCATGCTG
GCAACCCGCTACTCTGACCAACAGGGATCCAAATCGACAAAAAGTTTTGC
AACTCTACATTGGCACCGACCAATATCAAAACGGTTCATCAAACATCCTT
ACTCCATATCGAGAGCAACCTCGATCGACTCGGATTGTTATCGCCTACCC
ACGACCAGCGTTCTCAGCAAAAAAACAGAAGAATTACGCTCCAAACCAGT
TTTGATCAATAAAAAGTCCAAGTTTCTCAAGGCAACACAATCGTACAGAA
ATAAGGAAAATTGAAATACCGAGGTCCATGGTGGTGGAGGCCTTGGAGCT
GGTGAAGCCGGCGCGCGAGCCAGTATCCAGCCGTCCGAAGCTCTGCGCAT
CCCTGAAAAAGCCCCACGAATCTTGCCCGTTCGCCGCTCCTTGTGGCCCT
CGTAGGAAGAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTCAGAAACC
TCCCGGTTCAAGCCTGCACATGTGATTCTCGTGCACAGGGGTTCAGCCTG
GCCTCCCTGGCTCGTCGACGATCGAGCTGCCCTCCGCCTTCGCCGAATCT
GGTGCGTACCCACCCGATAGAGCACTACTAGGCTTTTCCGCGACAGTGCT
CCCTGCCACTCGCGTGCCGCCACCTCCCGAAGGCCACCATATTGGGGCTC
GGAAGAGGCGCACACCTGGGAGCACCATCATCTTCAGCCAACCATACCGC
CGCCGCGTCTCAACCTACAGGCTGAATCGCGAAGACAGCCAGTTGGCTGC
ACCTTGAGGTGAGTCCGGCCCTACACCCGCCGGAAAGACCCTCCCACACT
CATACCCGAAAACAGGTTTCGGAGGGAGAGGGCACGAGGTCAGGAACGCC
ATCGGTACGCATTTGCGTGACCCGATGGCGTATGGTGGTTTCATTGGACG
CCGGCGCGAAACTCGGAGGAATCCGTAAGTAAGCACCAGATTCAGTCTGA
GTATGGAGATGAGCAGACTGACGCGGAACGAGACTGCTGAAACTGTCTCG
CGAGACCAAATTCTCAGGCACGAACGCGGACAGGGGGATATTCATTTTCC
TGTTCAGCTGACGACGAGCAGGATTAAACCTTACCCGGTTGATCCATACT
CCGCCACATGTGATGGCTGTACGTACATACATACATACTGTTTACCCAAT
GTTACTACCATCGGGAACCCGTTTAAATGCCATGAAGATGTTTTGAATTT
GCAGCCTATATATGATCCGACCTAAACGTTTTGACATTTTTTCCTTCCTG
ACTGGTGGATGATGATGCCAAAAAGGCATAGGCGCGTTCTGATTTTTCTT
TACCAGTAAATAACAATAATAACAATATACCGAAGTATTAATCATGTTAA
TAGGAGTTTTTTTGTGCATGAAAAAAACGTCCAAGGCTGAATCGTCACGA
CACGATATCATCGTGCCTGGGCACAGCATTCTGTCTTGCTGACAAGCCGA
TCGGTGATCGGTCGCCCCGGCAACGGGTACGCTGGCTCTGTGGGACTCGG
CGAAAGCTCCCGGAGCATGTTTTTCTTGGAAGTCTCTTGAAACCCGTCCC
ATGCCATGAAGAGCTTTTTGTCCCTACAGTATAGCCAATGTTCCCACCTA
AACATTTTGACATGCTTCGGAAGGTTTAGATTGCGTTCAGGTTTTTCTAT
ACATGTTCTTGTATTGTAATGAGGCGTTAAGCTCTTGCTGCTATAGAGCT
ATCATAGTTCAAACGGTTTCAGTACATTCTTTCTTTTACGTATTGGCGAA
ATGAGTGATGTTCTTTTGTTCTTCTGCTGCTGCTTTCGGACATTCCACCT
GTTGCCCTCGTGGCACAGCCATTCCAACCATCACCGGACGAGAGCAGCTC
CCGGACAGACTGGTTCGACGGCTAAACGCCGGCATGGAAAGCGCGCCCCA
TACCGACTGTCGATCGATCTCGAGCGCGCTCCAGAGGGAAGCTCCGTGTG
GGTGAAGCGACGACGCTCGTCACCCTTGGTGGCGGCACCGGGGTCATCTG
TGTCACCAACGGAGCCTCAAGATGGTGAATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7108:17292..21973+

>mRNA_F-serratus_M_contig7108.18318.1 ID=mRNA_F-serratus_M_contig7108.18318.1|Name=mRNA_F-serratus_M_contig7108.18318.1|organism=Fucus serratus male|type=CDS|length=1152bp|location=Sequence derived from alignment at F-serratus_M_contig7108:17292..21973+ (Fucus serratus male)
GACCCGATTGCTGTCCAATTCAAAAACGATCAATTAGCTTCCATGGCGGC
CGCAAAGCGTCAGAGCGAGCAATCCTGTCTGCTAGAGGCTTCACCGTCAA
CTGAGGCCTCAAACGAAAGACTCTCCCTCTCCCAGCTGGCAACCCAGAGA
CTAGGCTCTCTGAAATGGTTGATGTCCAGAGATCTGACTGTAAGCCCACT
GGGCAAGCAATCAGCTGGAGGGACACCGGGTTCCAAGGCGGGTGGCGACT
CTGGTGATCGAGGGACTACGTGGCGCTCTTACACCGTGGATATGAGTGAT
GCTCCGTCCTCTGTGTCCGAGACAGGAACCGATGGCACAGTCTCCAAGGC
GCCAGAACGCAGGACCCGATTGCTGTCCAATTCAAAAACGATCAATTAGC
TTCCATGGCGGCCGCAAAGCGTCAGAGCGAGCAATCCTGTCTGCTAGAGG
CTTCACCGTCAACTGAGGCCTCAAACGAAAGACTCTCCCTCTCCCAGCTG
GCAACCCAGAGACTAGGCTCTCTGAAATGGTTGATGTCCAGAGATCTGAC
TGTAAGCCCACTGGGCAAGCAATCAGCTGGAGGGACACCGGGTTCCAAGG
CGGGTGGCGACTCTGGTGATCGAGGGACTACGTGGCGCTCTTACACCGTG
GATATGAGTGATGCTCCGTCCTCTGTGTCCGAGACAGGAACCGATGGCAC
AGTCTCCAAGGCGCCAGAACGCAGCCATTCCAACCATCACCGGACGAGAG
CAGCTCCCGGACAGACTGGTTCGACGGCTAAACGCCGGCATGGAAAGCGC
GCCCCATACCGACTGTCGATCGATCTCGAGCGCGCTCCAGAGGGAAGCTC
CGTGTGGGTGAAGCGACGACGCTCGTCACCCTTGGTGGCGGCACCGGGGT
CATCTGTGTCACCAACGGAGCCTCAAGATGGTGAATGACCATTCCAACCA
TCACCGGACGAGAGCAGCTCCCGGACAGACTGGTTCGACGGCTAAACGCC
GGCATGGAAAGCGCGCCCCATACCGACTGTCGATCGATCTCGAGCGCGCT
CCAGAGGGAAGCTCCGTGTGGGTGAAGCGACGACGCTCGTCACCCTTGGT
GGCGGCACCGGGGTCATCTGTGTCACCAACGGAGCCTCAAGATGGTGAAT
GA
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