mRNA_F-serratus_M_contig710.18314.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig710.18314.1
Unique NamemRNA_F-serratus_M_contig710.18314.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 8.740e-107
Identity = 166/303 (54.79%), Postives = 221/303 (72.94%), Query Frame = 2
Query:  440 NVCPCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLP-GGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
            +VCP G +VC DPH+QGL GQ I+W+GVDG WY+L+KDD  D+ INVR TAPLP +FPDRQ +T +A+LS+ HS+V+EV+ PYT  T GC  GVSPCLA+GGL I VD + VD L   +  V +  G + VSSSNLP EC++FGG ++WARM +DM+  RR+L   ++ E+W+L + H M AP +CA ++   DL+D+QS+ A+ +I TPTV VRL+ G+N++  G+ +  GR LP+L+FWQMGVG++GL + + +LSGLLGETAR V D  G  VMEG +A  GTIEDYRVSDA    F  L
Sbjct:  103 SVCPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.230e-101
Identity = 158/292 (54.11%), Postives = 213/292 (72.95%), Query Frame = 2
Query:  473 DPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
            DPH++GL GQ I W+GVDG WY+LVKDD  DL INVR TAPLP +FPDRQ +T +AI+S+ +S+V+EV+ PYT  T GC  GVSPCLA+GGL I VDG+ VD L   +  + +  G + +S+SNLP ECR+FGG ++WARM +D+L DRRQL   ++ E+W+L +  NM A  +CA ++   DL+D+Q+N A+ +I TPTV VRL+ G+N++  G+ +  GR LP+L+FWQM VG++GL + + +LSGLLGETAR V    G  VMEG++A  GT+EDYRVS A G  FA L
Sbjct:   15 DPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 4.260e-97
Identity = 165/303 (54.46%), Postives = 218/303 (71.95%), Query Frame = 2
Query:  443 VCPCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTAD-TQGCSNGV-SPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLH 1345
            +CP G  +C DPH++GL GQ I+W GVDG WY+ VKD   DL++NVR TAPLP DFPDRQ +TG++++S+ HSLV+EV  PY+ D   GC +G  +PCLA+GGLS++VDGE    L  P     LPGGIEVS+ NLP +C +FGG K+WAR  + +L  RR+L A ++FEDW+LSF +M A ++C  +++   L+ VQS+ A+ +IVTP VVVRL+VGI H+   + D  GR LP+LD WQM VG+ GLSL +E+L+G+LGETAR V D +G+ VM G +A  GT EDYRVS   G DFA LH
Sbjct:  394 ICPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAILA-RRKLRA-QSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLH 694          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.260e-88
Identity = 151/297 (50.84%), Postives = 208/297 (70.03%), Query Frame = 2
Query:  467 CFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQG-CSNGV-SPCLADGGLSISVDGELV---DFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
            C D +   L GQ I+W G+DG WY+LV+D   DL +NVR TAP P +FPDRQ +TG+++++  HSLV+EV +PY  DT G C +G  +PCLA+GGLS+ VDGE       L     D  LPGGI+VS++NLP +C +FGG K+ AR   + + + R+   ++TFE+W+LSF +M A ++C  ++ + DLSDVQS QA+ +I+TP VVVR +VGI H++ G  +  GR +P+LD W+M VG+ GLSL +E+L+G+LGETAR V+D  G  VM+G +A  GT EDYRVS A GTDFA L
Sbjct:   54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALL 349          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 2.920e-86
Identity = 144/291 (49.48%), Postives = 193/291 (66.32%), Query Frame = 2
Query:  473 DPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLSAAKTFEDWMLSF-HNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHL 1342
            DPH++GL GQ + W+G DG WY+L+KDD  DL INVR TAPLP +FPDRQ +T +AI+S+ +S+V+EVK PYT DT GC   VSPC A+GGL I VDG  VD L                S  +P      GG+++WARM +D+L  RRQL   ++ E+W+L +  NM A  +CA ++   DL+D+Q+N A+ +I TPTV VRL+ G+N++S G+ +  GR LP+L+FWQ+ VG++GL +   +LSGL GETA  V D  G  VMEG +A  G +EDYRVS A G  FA L
Sbjct:   20 DPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELL-------------RFSRQMP------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 9.580e-71
Identity = 138/302 (45.70%), Postives = 181/302 (59.93%), Query Frame = 2
Query:  464 VCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEH-SLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRKVWARMQKDM--LRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVNN---GDLSDVQSNQALLRIVTPTVVVRLSVGINHR-SAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLH 1345
            V  D H+ GL GQ I+W G D  WY L+ + +   Q+N R TAP+P +FP RQ ++GV+I S E  SLVVEVK P T +T+GCS+  +PCLA+G L I VDG+    L  P  ++ LPGG + VSS+NLP ECR FGG ++WA     M     RR L     F DW+L    M AP +CA+F        LS VQSN+A+LR+ T  V VR+ VG+N++ S   +D     +PELDFWQ  +  E L    E L G+LG+TAR V+D +G  +  G EAL G +E  RVS   G DF  +H
Sbjct:    7 VSGDSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGDESHALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.230e-42
Identity = 107/310 (34.52%), Postives = 164/310 (52.90%), Query Frame = 2
Query:  467 CFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-----HSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQLS---AAKTFEDWMLSFHNMVAPEFCAMFV------NNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGK--TDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLHN 1348
            C DPH+ G  GQ  ++ G DG WYA+V D   DL++N+R T+P+P + P+  +ITG+ I +++     HSLV+ V +P++ D+  C    S CLADG L++ +DG++     G   +  L  G+ +S+ NLP  CR FG  K W R + + +   R+L+     +   DW+L          C  +V          L +  S     +IVTP   +RLS G  H+ A +  TDRF  D+P+   WQM +  + + L  ++ +G+LGET +  +DA GN +MEG  A+ G+ EDY V       F    N
Sbjct:  138 CGDPHMTGFLGQKFDFVGQDGEWYAVVSD-MPDLEVNMRVTSPVPAE-PEITYITGLGIKTRDIEGLDHSLVITVTDPHSLDS-ACPVQGSTCLADGALTVELDGDVALLSPG---EAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRF--DIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFVAARN 438          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 8.570e-40
Identity = 107/302 (35.43%), Postives = 164/302 (54.30%), Query Frame = 2
Query:  449 PCGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-----HSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLR--DRRQLSAAKTFEDWMLSFHNMVAPEFCAMFV-------NNGDLSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVS 1312
            P   + C DPH+ G  GQ  ++TG DG WY L+ D    + +N+R TAP+P+  PD  +ITG+++++Q+     HS+V+ VK+P++ ++  C  GV+PCLA+G LS+S+DG+  + L+ P   V +   ++VS  NLP  CR FG  K W R + +  +   RR  S  +   DW+L          C  +V        +G L   +S  A  +IV P   VRLS G  H+ A    ++G  LP+   WQM + ++  S V     G+LGET     DA+G  VM G E++ GT E+  ++
Sbjct:   49 PTDPTACGDPHMTGFHGQKFDFTGDDGEWYCLISD-LPSMNLNMRVTAPVPSR-PDITYITGISLITQDGNGLDHSVVITVKDPHSLESS-CPAGVTPCLANGALSVSLDGK--EALSAP-GVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA----QYG--LPDHSTWQMNLAIDSDS-VGVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECELA 337          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.900e-39
Identity = 96/254 (37.80%), Postives = 149/254 (58.66%), Query Frame = 2
Query:  452 CGVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQE-HSLVVEVKEPY----TADTQGCSNGVSPCLADGGLSISVDGELVDFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARM--QKDMLRDRRQLSAAKTFEDWMLSFHNMVAPEFCAMFVN--NGD---LSDVQSNQALLRIVTPTVVVRLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVE 1177
            C   +  DPHL GL GQH +W G DG WYA +    D LQ+N+R T+ LP  FP+RQ +TGVA++++  H++  ++ +P     T      + G +PCL +GGL I+VDG   + L G   +    G I +++ NLP EC+ FG   +W  +  ++ +    R L +A+T  DW+++   M+AP +C  ++   NGD   L+ ++S+ A+LRI TP + +R++VGIN     +T + GR +P   FWQM V VE
Sbjct:  238 CTPRIWDDPHLTGLRGQHFDWYGQDGGWYAFLST-PDQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDLAPTCHGTVDAVGSAPCLVNGGLRITVDGR--EQLQG-AGEYDFDGDIHITAVNLPLECQRFGDYMMWGDLDVEQRLRGGSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGINTERE-QTLQDGRVVPTASFWQMDVRVE 486          
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Match: D7G4E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E8_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.870e-36
Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 2
Query:  455 GVSVCFDPHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQFITGVAILSQEHSLVVEVKEPYTADTQG-CSNGVS-PCLADGGLSISVDGE 769
            G  +C DPH++GL GQHI+W GVDG WYA +KDD  DL +NVR TAPLP +FP+RQ +TG+++++ EHSL++EV  PY  D  G C +G+S PCLA+GGLS++V+GE
Sbjct:    4 GTDICDDPHMKGLRGQHIDWFGVDGGWYAFIKDDDIDLHVNVRLTAPLPEEFPERQLVTGLSVIAGEHSLILEVTNPYDTDINGGCLDGMSTPCLANGGLSVTVNGE 110          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig710.18314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JS96_9PHAE8.740e-10754.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI1.230e-10154.11Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JNZ2_9PHAE4.260e-9754.46VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE1.260e-8850.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP37_9PHAE2.920e-8649.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD0_9PHAE9.580e-7145.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE2.230e-4234.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE8.570e-4035.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G544_ECTSI2.900e-3937.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4E8_ECTSI1.870e-3657.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig710contigF-serratus_M_contig710:136027..139471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size2063
Cds size1326
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig710.18314.1prot_F-serratus_M_contig710.18314.1Fucus serratus malepolypeptideF-serratus_M_contig710 136052..138759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932185.6716583-UTR-F-serratus_M_contig710:136026..1360511622932185.6716583-UTR-F-serratus_M_contig710:136026..136051Fucus serratus maleUTRF-serratus_M_contig710 136027..136051 +
1690964189.1893737-UTR-F-serratus_M_contig710:136026..1360511690964189.1893737-UTR-F-serratus_M_contig710:136026..136051Fucus serratus maleUTRF-serratus_M_contig710 136027..136051 +
1622932185.7684023-UTR-F-serratus_M_contig710:138759..1394711622932185.7684023-UTR-F-serratus_M_contig710:138759..139471Fucus serratus maleUTRF-serratus_M_contig710 138760..139471 +
1690964189.2432103-UTR-F-serratus_M_contig710:138759..1394711690964189.2432103-UTR-F-serratus_M_contig710:138759..139471Fucus serratus maleUTRF-serratus_M_contig710 138760..139471 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932185.70924-CDS-F-serratus_M_contig710:136051..1361081622932185.70924-CDS-F-serratus_M_contig710:136051..136108Fucus serratus maleCDSF-serratus_M_contig710 136052..136108 +
1690964189.200595-CDS-F-serratus_M_contig710:136051..1361081690964189.200595-CDS-F-serratus_M_contig710:136051..136108Fucus serratus maleCDSF-serratus_M_contig710 136052..136108 +
1622932185.72797-CDS-F-serratus_M_contig710:137162..1375071622932185.72797-CDS-F-serratus_M_contig710:137162..137507Fucus serratus maleCDSF-serratus_M_contig710 137163..137507 +
1690964189.2126253-CDS-F-serratus_M_contig710:137162..1375071690964189.2126253-CDS-F-serratus_M_contig710:137162..137507Fucus serratus maleCDSF-serratus_M_contig710 137163..137507 +
1622932185.7489824-CDS-F-serratus_M_contig710:137835..1387591622932185.7489824-CDS-F-serratus_M_contig710:137835..138759Fucus serratus maleCDSF-serratus_M_contig710 137836..138759 +
1690964189.2287376-CDS-F-serratus_M_contig710:137835..1387591690964189.2287376-CDS-F-serratus_M_contig710:137835..138759Fucus serratus maleCDSF-serratus_M_contig710 137836..138759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig710.18314.1

>prot_F-serratus_M_contig710.18314.1 ID=prot_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=polypeptide|length=442bp
MRGANYLLLFLGAINGFGQAYVINSNEVADIQLGMLGAGSDGMVDAEGLS
NQRELQSTVRSFDIVVTFVNTINLAEGTSIDFTFDGTSGPVGTFTVTAPR
PGGTKYFEFCLDAAGETEISSTGSSDMDDGLLIVDITPNVCPCGVSVCFD
PHLQGLSGQHIEWTGVDGSWYALVKDDQDDLQINVRTTAPLPTDFPDRQF
ITGVAILSQEHSLVVEVKEPYTADTQGCSNGVSPCLADGGLSISVDGELV
DFLNGPTNDVHLPGGIEVSSSNLPQECREFGGRKVWARMQKDMLRDRRQL
SAAKTFEDWMLSFHNMVAPEFCAMFVNNGDLSDVQSNQALLRIVTPTVVV
RLSVGINHRSAGKTDRFGRDLPELDFWQMGVGVEGLSLVHESLSGLLGET
ARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFAHLHN*
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mRNA from alignment at F-serratus_M_contig710:136027..139471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig710.18314.1 ID=mRNA_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=mRNA|length=3445bp|location=Sequence derived from alignment at F-serratus_M_contig710:136027..139471+ (Fucus serratus male)
CAGTACACTTCCTACCACCGGAAATATGCGCGGAGCCAATTATCTTCTTC TCTTCCTGGGCGCCATCAATGGCTTCGGACAGGTCAGTCAAACAGCGCTC AACTGGCACCAACACGTAGTAAGTTTTGCTCTCGAGCTCACGTGTGCCGC TTAATAAGTTCGGTACTGTATGATGTATCGCCGTCACTAAACAGTACTGT ATGATTATCATCCTCTACGAGGTGACGCTGTTGCTGTTGTTGTTGTCTTC AGCACATGAAAATCCGTTCGTTCCGATCTCTGCTCAGTACCTTCCAACAT CCGTACCGGTCCAACTGACGCGAACGCCTTCCGTGGTCTCAGGCTGACTG CCCCAAAAGGGTACATATTATGAAAAATCAAAGAAAAAATCAAAGGGCCC AGAAAAGTCAACACGCGCGATAAAATAGGAAACAAAAAACGAAAAATAAG GCTCCAGACAGTCAGACCTCACAGGCAACATGTCGGACAAAGGGGATAGA TAAAGCCCATCGCTCCCACTCGACACGCGAGGCCAATGAAAATGAAACAG ACACGAAGAATCAAGTATCATCAGCCAAGACAATGATAAAATCGCATGGT TCTATCCTTGCACACCCCAACTAGGCCGGGGTGTAGTTGCCGCCGGGTTC CCACCGGCCAGGCCAGTATTTAGTACATAGTAGATCATGATGATTTTCCG CGAACGATGTACATATTAATAGTATAATCCAAGAGTCATTATTGGATTAC GAAGTACTAAGCATTAACGAACGAGCGAGGCTCTTACAATGAATGCCATG TCCAACTTCACCCGACAAGTTGTATTGATCACCCGCCCATCATGCATATC CGTCCGCCGTGCCGTTTCCCCAGACTTTTGGCTTAAACCCCAGTTTGGGG AGCATTAGTATTAAACTGAGTCCAGTTTATTCTGTAGGGGGTGTGCGCGT CGTCGATCCCGCCCCCCCCTCTTGTCAGACGTGATTATTAATAATGTAAT TGACAGTCTGTACCTTAGTGTGTACCGGTACTCTTTTTTTCTCTTCTAGG CAAAAGCACCGTTTCGCGGACCGTTGGGAAGCCTTCGACGGAATAACAAG TTTCCCGTTCCCCGACTGCTTGTCATGTCCGCGCAGGCCTATGTCATAAA TAGCAATGAGGTCGCGGATATTCAGCTCGGGATGCTTGGCGCAGGGTCGG ATGGCATGGTCGATGCAGAAGGCCTCTCCAACCAGCGCGAACTTCAGAGC ACCGTCCGGTCCTTCGATATCGTTGTCACGTTCGTTAACACTATCAATTT GGCAGAGGGCACTTCCATCGATTTTACCTTCGACGGAACGTCGGGGCCAG TCGGCACCTTCACCGTGACTGCGCCAAGACCCGGTGGAACGAAGTATTTC GAGTTCTGCTTGGACGCCGCGGGCGAAACGGAAATCAGCTCTACTGGAAG TAGTGACATGGACGACGGACTTCTGATCGTTGTGAGCCCTGAAAATTGCC CGTTTCCAATCTAAAACCTAGAAAAATATAGACTTAGCTCGTTGACATGC GTTCTATCCCATTAGTAAAGCTGGCGCCGGAAATAAGCACCCGCGAGGCA GCCACAATTAAGCCACAATCATCTCCTCCGACGAGTCGCGCGGGTGAGGG GCATATGAAGGGAAATTTTGCAGCCGGAAGAAAGTTATACCGGGAAGTCG CAACCTCGCGAAAGCATTAAAATGCTCGATTGTGAGTTGTTACATATCGG CGGGCGAGCAAACCTTTTTTTTCGCTGTTCTGATTACTTGCCCCTTTTCC TCGCGCCAGGACATCACTCCGAACGTGTGCCCCTGTGGAGTCTCCGTGTG CTTTGACCCGCACCTGCAAGGCCTCTCCGGACAGCATATCGAGTGGACTG GGGTCGACGGTAGCTGGTACGCCCTCGTGAAGGATGATCAGGATGACCTC CAGATCAACGTGCGCACCACCGCGCCTCTGCCTACCGACTTCCCCGACCG TCAGTTCATCACGGGTGTGGCCATTCTTTCTCAGGAACACTCTCTCGTCG TCGAGGTAAAGGAACCCTACACCGCCGACACTCAGGGCTGCTCCAACGGC GTCTCACCCTGCCTGGCTGACGGTGGCCTGAGCATCTCTGTAGACGGAGA GCTGGTTGACTTCCTCAACGGACCTACCAACGACGTACACCTTCCGGGTG GTATTGAGGTGTCTTCGTCCAACCTGCCCCAAGAGTGCCGCGAGTTCGGC GGCAGGAAGGTATGGGCACGCATGCAGAAGGACATGCTCCGAGACCGCCG CCAGCTCTCCGCTGCCAAGACATTCGAGGACTGGATGTTGAGCTTCCACA ACATGGTGGCGCCGGAATTCTGCGCCATGTTCGTCAACAACGGCGACCTG TCCGACGTGCAGTCGAACCAGGCCCTTCTCAGGATCGTGACCCCCACGGT CGTTGTGCGCCTCTCCGTCGGCATCAACCACCGCAGCGCCGGCAAGACGG ACCGGTTCGGTCGTGACCTCCCCGAACTCGACTTCTGGCAGATGGGTGTT GGTGTAGAGGGCTTGTCTCTTGTGCACGAGTCTCTTTCAGGTCTCCTGGG CGAGACTGCGCGCGTGGTTGTGGACGCCGAGGGTAATGATGTCATGGAAG GAGCTGAGGCACTCTCTGGCACCATCGAAGATTACCGCGTGTCCGACGCC GAGGGCACTGACTTTGCTCATCTCCACAACTAAGGAAGAGAGCGAGAGGT TCTATAAAAATGAGTATTAAGAAGGTGGAAGGTTGTCATGGCGAGTAATA TTTAGCTCGTTGCAAGGCAACTAATGCAATCGTTGCTTCGGTTATATTGA CTCTGGCCGTTTTGCCGTGTGGCTGGTGTGTGCGCGTGTTGATCGGCCGT GGTAATACGCGATTGTTTAGCAAGATCAGTGATGCGCCAAATTGCTCCAC TCGATGAACTACGATGAATGGCAAGATTGTGATACTGTATATCGAGACTT CGAGCTGCAGAGGCGACTGCCTTGCTCGTATTTGCCATTGGAAGTTGTGG AGAGTTTATATATATATACATATATGTCTTCAGGAGTAAGTGGCTCCTTC GCAGCGCAGTTTTGGGCCTCCCTATTTCAAACTATTTTGGCTAGTAAACT TTTGTCTCCAAATATGTTTAGCTTATTAAGATCAACTTCTTGCGATGTAA CCCAGCAATGCCCTTAAAAACAATGTGCAGTATTGTAGTGCCCCTCCTAG GAGAAAAGTATGAATTATTGTGTTGATTATCAAACCTTTGAATATAGTAA ATCAATCTATACAGTAATACGTGGCGCTGGAAAGGGCTCCCGAGCAAGGA AACTGCTATGTATACCTGGTACAATAGACTTAGATGCTCGATTTTGTGAA AATATAATGAAGGTAAAAAAACGCATGATTCAGTTAAATAACCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig710:136027..139471+

>mRNA_F-serratus_M_contig710.18314.1 ID=mRNA_F-serratus_M_contig710.18314.1|Name=mRNA_F-serratus_M_contig710.18314.1|organism=Fucus serratus male|type=CDS|length=2652bp|location=Sequence derived from alignment at F-serratus_M_contig710:136027..139471+ (Fucus serratus male)
ATGCGCGGAGCCAATTATCTTCTTCTCTTCCTGGGCGCCATCAATGGCTT
CGGACAGATGCGCGGAGCCAATTATCTTCTTCTCTTCCTGGGCGCCATCA
ATGGCTTCGGACAGGCCTATGTCATAAATAGCAATGAGGTCGCGGATATT
CAGCTCGGGATGCTTGGCGCAGGGTCGGATGGCATGGTCGATGCAGAAGG
CCTCTCCAACCAGCGCGAACTTCAGAGCACCGTCCGGTCCTTCGATATCG
TTGTCACGTTCGTTAACACTATCAATTTGGCAGAGGGCACTTCCATCGAT
TTTACCTTCGACGGAACGTCGGGGCCAGTCGGCACCTTCACCGTGACTGC
GCCAAGACCCGGTGGAACGAAGTATTTCGAGTTCTGCTTGGACGCCGCGG
GCGAAACGGAAATCAGCTCTACTGGAAGTAGTGACATGGACGACGGACTT
CTGATCGTTGCCTATGTCATAAATAGCAATGAGGTCGCGGATATTCAGCT
CGGGATGCTTGGCGCAGGGTCGGATGGCATGGTCGATGCAGAAGGCCTCT
CCAACCAGCGCGAACTTCAGAGCACCGTCCGGTCCTTCGATATCGTTGTC
ACGTTCGTTAACACTATCAATTTGGCAGAGGGCACTTCCATCGATTTTAC
CTTCGACGGAACGTCGGGGCCAGTCGGCACCTTCACCGTGACTGCGCCAA
GACCCGGTGGAACGAAGTATTTCGAGTTCTGCTTGGACGCCGCGGGCGAA
ACGGAAATCAGCTCTACTGGAAGTAGTGACATGGACGACGGACTTCTGAT
CGTTGACATCACTCCGAACGTGTGCCCCTGTGGAGTCTCCGTGTGCTTTG
ACCCGCACCTGCAAGGCCTCTCCGGACAGCATATCGAGTGGACTGGGGTC
GACGGTAGCTGGTACGCCCTCGTGAAGGATGATCAGGATGACCTCCAGAT
CAACGTGCGCACCACCGCGCCTCTGCCTACCGACTTCCCCGACCGTCAGT
TCATCACGGGTGTGGCCATTCTTTCTCAGGAACACTCTCTCGTCGTCGAG
GTAAAGGAACCCTACACCGCCGACACTCAGGGCTGCTCCAACGGCGTCTC
ACCCTGCCTGGCTGACGGTGGCCTGAGCATCTCTGTAGACGGAGAGCTGG
TTGACTTCCTCAACGGACCTACCAACGACGTACACCTTCCGGGTGGTATT
GAGGTGTCTTCGTCCAACCTGCCCCAAGAGTGCCGCGAGTTCGGCGGCAG
GAAGGTATGGGCACGCATGCAGAAGGACATGCTCCGAGACCGCCGCCAGC
TCTCCGCTGCCAAGACATTCGAGGACTGGATGTTGAGCTTCCACAACATG
GTGGCGCCGGAATTCTGCGCCATGTTCGTCAACAACGGCGACCTGTCCGA
CGTGCAGTCGAACCAGGCCCTTCTCAGGATCGTGACCCCCACGGTCGTTG
TGCGCCTCTCCGTCGGCATCAACCACCGCAGCGCCGGCAAGACGGACCGG
TTCGGTCGTGACCTCCCCGAACTCGACTTCTGGCAGATGGGTGTTGGTGT
AGAGGGCTTGTCTCTTGTGCACGAGTCTCTTTCAGGTCTCCTGGGCGAGA
CTGCGCGCGTGGTTGTGGACGCCGAGGGTAATGATGTCATGGAAGGAGCT
GAGGCACTCTCTGGCACCATCGAAGATTACCGCGTGTCCGACGCCGAGGG
CACTGACTTTGCTCATCTCCACAACTAAGACATCACTCCGAACGTGTGCC
CCTGTGGAGTCTCCGTGTGCTTTGACCCGCACCTGCAAGGCCTCTCCGGA
CAGCATATCGAGTGGACTGGGGTCGACGGTAGCTGGTACGCCCTCGTGAA
GGATGATCAGGATGACCTCCAGATCAACGTGCGCACCACCGCGCCTCTGC
CTACCGACTTCCCCGACCGTCAGTTCATCACGGGTGTGGCCATTCTTTCT
CAGGAACACTCTCTCGTCGTCGAGGTAAAGGAACCCTACACCGCCGACAC
TCAGGGCTGCTCCAACGGCGTCTCACCCTGCCTGGCTGACGGTGGCCTGA
GCATCTCTGTAGACGGAGAGCTGGTTGACTTCCTCAACGGACCTACCAAC
GACGTACACCTTCCGGGTGGTATTGAGGTGTCTTCGTCCAACCTGCCCCA
AGAGTGCCGCGAGTTCGGCGGCAGGAAGGTATGGGCACGCATGCAGAAGG
ACATGCTCCGAGACCGCCGCCAGCTCTCCGCTGCCAAGACATTCGAGGAC
TGGATGTTGAGCTTCCACAACATGGTGGCGCCGGAATTCTGCGCCATGTT
CGTCAACAACGGCGACCTGTCCGACGTGCAGTCGAACCAGGCCCTTCTCA
GGATCGTGACCCCCACGGTCGTTGTGCGCCTCTCCGTCGGCATCAACCAC
CGCAGCGCCGGCAAGACGGACCGGTTCGGTCGTGACCTCCCCGAACTCGA
CTTCTGGCAGATGGGTGTTGGTGTAGAGGGCTTGTCTCTTGTGCACGAGT
CTCTTTCAGGTCTCCTGGGCGAGACTGCGCGCGTGGTTGTGGACGCCGAG
GGTAATGATGTCATGGAAGGAGCTGAGGCACTCTCTGGCACCATCGAAGA
TTACCGCGTGTCCGACGCCGAGGGCACTGACTTTGCTCATCTCCACAACT
AA
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