mRNA_F-serratus_M_contig70.18189.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18189.1
Unique NamemRNA_F-serratus_M_contig70.18189.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:502057..502868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size814
Cds size537
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.0134509-CDS-F-serratus_M_contig70:502056..5025931622932150.0134509-CDS-F-serratus_M_contig70:502056..502593Fucus serratus maleCDSF-serratus_M_contig70 502057..502593 +
1690964171.965397-CDS-F-serratus_M_contig70:502056..5025931690964171.965397-CDS-F-serratus_M_contig70:502056..502593Fucus serratus maleCDSF-serratus_M_contig70 502057..502593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.0575135-UTR-F-serratus_M_contig70:502593..5028681622932150.0575135-UTR-F-serratus_M_contig70:502593..502868Fucus serratus maleUTRF-serratus_M_contig70 502594..502868 +
1690964171.9762866-UTR-F-serratus_M_contig70:502593..5028681690964171.9762866-UTR-F-serratus_M_contig70:502593..502868Fucus serratus maleUTRF-serratus_M_contig70 502594..502868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18189.1prot_F-serratus_M_contig70.18189.1Fucus serratus malepolypeptideF-serratus_M_contig70 502057..502593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18189.1

>prot_F-serratus_M_contig70.18189.1 ID=prot_F-serratus_M_contig70.18189.1|Name=mRNA_F-serratus_M_contig70.18189.1|organism=Fucus serratus male|type=polypeptide|length=179bp
ERLLRVKLADGGVVAVRYGENEARRRQVGAAGGAVGRGENSRCRLQPSPP
SHLYRGLQPPNPTFLAVANGPLVIRNRCSSFAVAGGMFSSRGSPKSLGRE
GDVLTDFGRLGKGGHLETTAIATPTTKVQRDREKSTGADDAADGGGSVAV
IRINGSPPRQPAVVRRFKMALQNINNLY*
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mRNA from alignment at F-serratus_M_contig70:502057..502868+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18189.1 ID=mRNA_F-serratus_M_contig70.18189.1|Name=mRNA_F-serratus_M_contig70.18189.1|organism=Fucus serratus male|type=mRNA|length=812bp|location=Sequence derived from alignment at F-serratus_M_contig70:502057..502868+ (Fucus serratus male)
GAAAGACTTTTAAGGGTGAAGCTCGCGGACGGTGGGGTTGTGGCCGTCCG
ATACGGCGAGAATGAAGCTCGCAGAAGACAAGTCGGTGCCGCTGGGGGCG
CCGTTGGCCGAGGGGAGAACTCCCGTTGCCGTCTACAACCGAGTCCACCG
AGCCACCTCTACCGAGGACTGCAACCTCCAAATCCAACCTTCCTCGCTGT
CGCCAACGGCCCTTTGGTCATTAGGAATAGGTGCTCCTCCTTCGCGGTCG
CTGGTGGCATGTTCTCGTCGCGAGGGTCACCCAAATCCCTTGGACGAGAG
GGCGATGTGCTTACGGACTTTGGTCGTCTTGGTAAGGGGGGGCACCTCGA
GACTACGGCGATAGCAACACCGACAACGAAGGTTCAACGCGATCGAGAGA
AGTCGACGGGAGCCGACGATGCAGCTGATGGTGGTGGATCCGTCGCAGTG
ATTCGAATAAACGGTAGCCCTCCGAGGCAGCCGGCGGTGGTGCGGCGGTT
CAAGATGGCCCTCCAAAATATTAACAATCTCTATTAATAGCTCGCCGACA
GTGAACTCTTCGAGCAGTGGAGCACTACTACTAATCCTGCACTTAAGGTT
ATTATAACGATATGAGCCATCTTAAACCACTACAGAACCGGTAGACACGT
GGAGATGTCGGTATGAGCCATCGTAAGAAAGCTGAGGTGCCACGTGCCGT
TCAAGCTCCTCGAGGTTTGGTTGATGCTCGTTCTGTCGCCGGAGAAATGG
ACGGGTCGTGTGGGTTCGAATCCCATCTTATCCTTCCTTTATTTTATTGA
TGAACTTTCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:502057..502868+

>mRNA_F-serratus_M_contig70.18189.1 ID=mRNA_F-serratus_M_contig70.18189.1|Name=mRNA_F-serratus_M_contig70.18189.1|organism=Fucus serratus male|type=CDS|length=1074bp|location=Sequence derived from alignment at F-serratus_M_contig70:502057..502868+ (Fucus serratus male)
GAAAGACTTTTAAGGGTGAAGCTCGCGGACGGTGGGGTTGTGGCCGTCCG
ATACGGCGAGAATGAAGCTCGCAGAAGACAAGTCGGTGCCGCTGGGGGCG
CCGTTGGCCGAGGGGAGAACTCCCGTTGCCGTCTACAACCGAGTCCACCG
AGCCACCTCTACCGAGGACTGCAACCTCCAAATCCAACCTTCCTCGCTGT
CGCCAACGGCCCTTTGGTCATTAGGAATAGGTGCTCCTCCTTCGCGGTCG
CTGGTGGCATGTTCTCGTCGCGAGGGTCACCCAAATCCCTTGGACGAGAG
GGCGATGTGCTTACGGACTTTGGTCGTCTTGGTAAGGGGGGGCACCTCGA
GACTACGGCGATAGCAACACCGACAACGAAGGTTCAACGCGATCGAGAGA
AGTCGACGGGAGCCGACGATGCAGCTGATGGTGGTGGATCCGTCGCAGTG
ATTCGAATAAACGGTAGCCCTCCGAGGCAGCCGGCGGTGGTGCGGCGGTT
CAAGATGGCCCTCCAAAATATTAACAATCTCTATTAAGAAAGACTTTTAA
GGGTGAAGCTCGCGGACGGTGGGGTTGTGGCCGTCCGATACGGCGAGAAT
GAAGCTCGCAGAAGACAAGTCGGTGCCGCTGGGGGCGCCGTTGGCCGAGG
GGAGAACTCCCGTTGCCGTCTACAACCGAGTCCACCGAGCCACCTCTACC
GAGGACTGCAACCTCCAAATCCAACCTTCCTCGCTGTCGCCAACGGCCCT
TTGGTCATTAGGAATAGGTGCTCCTCCTTCGCGGTCGCTGGTGGCATGTT
CTCGTCGCGAGGGTCACCCAAATCCCTTGGACGAGAGGGCGATGTGCTTA
CGGACTTTGGTCGTCTTGGTAAGGGGGGGCACCTCGAGACTACGGCGATA
GCAACACCGACAACGAAGGTTCAACGCGATCGAGAGAAGTCGACGGGAGC
CGACGATGCAGCTGATGGTGGTGGATCCGTCGCAGTGATTCGAATAAACG
GTAGCCCTCCGAGGCAGCCGGCGGTGGTGCGGCGGTTCAAGATGGCCCTC
CAAAATATTAACAATCTCTATTAA
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