mRNA_F-serratus_M_contig70.18184.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A6H5K2D2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 4.350e-18 Identity = 90/152 (59.21%), Postives = 99/152 (65.13%), Query Frame = -2
Query: 131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITA-------EAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
+ STI FDEIDSLAG RGSDGEH+ASRR KTEL+VQMDG+T XXXXXXXXXXXXXXXXXXXXXXXXXX TVIVLA TNT W+LDEALRR RV R RI LP + LFR+ + LDAL+
Sbjct: 112 YAPSTIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRR--RVQRRLEKRIYIPLPTEVGRKELFRINLGDVEVDDDVDLDALA 261
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S1XMB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMB5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.960e-17 Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = -2
Query: 257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSL-KTVIVLATTNTQWNLDEALRR 556
+ STI FDEID+LAG RG+ EH+ASRR KTEL+VQMDG++ AG DG G + KTVIVLA TN W+LDEALRR
Sbjct: 61 YAPSTIFFDEIDALAGSRGNANEHEASRRVKTELMVQMDGVSEAAGARDEDG--------------------DGDGGATNKTVIVLAATNMPWDLDEALRR 141
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: D8LRZ3_ECTSI (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ3_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 2.740e-16 Identity = 88/152 (57.89%), Postives = 97/152 (63.82%), Query Frame = -2
Query: 131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITA-------EAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
+ STI FDEIDSLAG RGSDGEH+ASRR KTEL+VQMDG+T XXXXXXXXXXXXXXXXXXXXXXXXXX TVIVLA TNT W+LDEALRR R RI LP + LFR+ + LDAL+
Sbjct: 544 YAPSTIFFDEIDSLAGSRGSDGEHEASRRVKTELMVQMDGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVIVLAATNTPWSLDEALRR------RLEKRIYIPLPTEVGRKELFRINLGDVEVDDDVDLDALA 689
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.650e-16 Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query: 257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 556
+ STI FDEID++AG RGS+GEH+ASRR KTEL+VQMDG+++ A G +TVIVLA TN W+LD+ALRR
Sbjct: 358 YAPSTIFFDEIDAIAGARGSEGEHEASRRVKTELMVQMDGVSSAADTEDGEQENEEEN-----------------GPGKRTVIVLAATNRPWDLDDALRR 440
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A0M0JI99_9EUKA (Katanin p60 ATPase-containing subunit a-like 1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JI99_9EUKA) HSP 1 Score: 82.8 bits (203), Expect = 5.760e-16 Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = -2
Query: 128 STILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGI----TAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDC-ALFRLTRTQLVFSSLFTLDALSS 547
STI DEIDSLAG RG EH+ASRR K+ELLVQMDGI TA+ G +G G LKTV VLA TN W+LDEALRR R+ +R ++ + P D AL + +L LDAL++
Sbjct: 31 STIFIDEIDSLAGQRGGASEHEASRRVKSELLVQMDGISTSSTADGGAAE-----------------------EGAG--LKTVTVLAATNFPWDLDEALRR--RLEKRIYIPLPE--PGDIRALLDINLKELTLEEGVDLDALAA 146
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN) HSP 1 Score: 84.0 bits (206), Expect = 7.790e-16 Identity = 47/97 (48.45%), Postives = 54/97 (55.67%), Query Frame = -2
Query: 257 STILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 547
ST+ FDEIDSLAG RG EH+ASRR KTEL+VQMDG+ +G G + +TVIVLA TNT W LDEALRR
Sbjct: 116 STVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDA---------------------GAEAAPRTVIVLAATNTPWELDEALRR 191
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: T1ELR9_HELRO (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ELR9_HELRO) HSP 1 Score: 82.8 bits (203), Expect = 5.100e-15 Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = -2
Query: 215 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISN 556
+ STI FDEIDS+ G RG+D EH+ASRR KTELL+QMDG+T G + K V+VLA TN W++DEALRR R+ +R ++ + N
Sbjct: 310 YAPSTIFFDEIDSICGRRGADNEHEASRRVKTELLIQMDGVTGATGLDE---------------------------DPTKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPN 394
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A4D9D8G0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8G0_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 8.180e-15 Identity = 58/145 (40.00%), Postives = 71/145 (48.97%), Query Frame = -2
Query: 131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
+ ST+ FDEIDS+AG RG GEH+ASRR KTEL+VQMDG+ A+A KTVIVLA TN W+LD+ALRR R RI LP + LFR+ + LDAL+
Sbjct: 446 YAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGV-ADASATTSVDDNEEGAADEEERPGS------------KTVIVLAATNMPWDLDDALRR------RMEKRIYISLPTEEGRKELFRINMRDIEVGDDMDLDALA 571
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK) HSP 1 Score: 79.7 bits (195), Expect = 2.470e-14 Identity = 58/100 (58.00%), Postives = 64/100 (64.00%), Query Frame = -2
Query: 257 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRR 556
+ STI FDEIDSLAG RGS EH+ASRR KTEL+VQMDG+T + XXXXXXXXXXXX VIVLA TN W+LDEALRR
Sbjct: 104 YAPSTIFFDEIDSLAGSRGSSSEHEASRRVKTELMVQMDGVTETSADXXXXXXXXXXXX----------------------VIVLAATNMPWDLDEALRR 181
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Match: W7U5R9_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5R9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.630e-14 Identity = 57/145 (39.31%), Postives = 70/145 (48.28%), Query Frame = -2
Query: 131 FPDSTILFDEIDSLAGCRGSDGEHKASRRAKTELLVQMDGITAEAGXXXXXXXXXXXXXXXXXXXXXXXXXXDGCGNSLKTVIVLATTNTQWNLDEALRRCVRVCEREFVRISNILPPDCA---LFRLTRTQLVFSSLFTLDALS 556
+ ST+ FDEIDS+AG RG GEH+ASRR KTEL+VQMDG+ A+A KTVIVLA TN W+LD+ALRR R RI LP + LFR+ + LD L+
Sbjct: 446 YAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGV-ADASATTSVDDNEEGAVDEEERPGS------------KTVIVLAATNMPWDLDDALRR------RMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLA 571 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig70.18184.1 >prot_F-serratus_M_contig70.18184.1 ID=prot_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=polypeptide|length=164bp MNALICWPEDKASRVNKEEKTSCVRVNRKRAQSGGKMFEIRTNSLSHTRTback to top mRNA from alignment at F-serratus_M_contig70:423352..423947+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig70.18184.1 ID=mRNA_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=mRNA|length=596bp|location=Sequence derived from alignment at F-serratus_M_contig70:423352..423947+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig70:423352..423947+ >mRNA_F-serratus_M_contig70.18184.1 ID=mRNA_F-serratus_M_contig70.18184.1|Name=mRNA_F-serratus_M_contig70.18184.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig70:423352..423947+ (Fucus serratus male)back to top |