mRNA_F-serratus_M_contig70.18169.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig70.18169.1
Unique NamemRNA_F-serratus_M_contig70.18169.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig70.18169.1 vs. uniprot
Match: D8LRY9_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.090e-7
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:    1 ADEVAACIWLAGDRFQESLFTRVTSTWAIEEAKVPAIA-----------AIGRNFSEVVAERLEATRLAVEAEVRVANEVATVRGEMALVESDWHGS 258
            AD+VA CIWLAGD  +E L  R+   W+  EA++ + A           A  ++F+EV+ ERL+AT  AVEAE++ A             +  W GS
Sbjct:  337 ADDVARCIWLAGDELREILLARLFDLWSTVEAEMVSYADGTAAASGGGGAPRKSFNEVLVERLQATCQAVEAELKAAKARGDDTAFCNPPQHHWRGS 433
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig70.18169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY9_ECTSI4.090e-737.11EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig70contigF-serratus_M_contig70:27798..28055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932150.507409-CDS-F-serratus_M_contig70:27797..280551622932150.507409-CDS-F-serratus_M_contig70:27797..28055Fucus serratus maleCDSF-serratus_M_contig70 27798..28055 +
1690964172.0881932-CDS-F-serratus_M_contig70:27797..280551690964172.0881932-CDS-F-serratus_M_contig70:27797..28055Fucus serratus maleCDSF-serratus_M_contig70 27798..28055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig70.18169.1prot_F-serratus_M_contig70.18169.1Fucus serratus malepolypeptideF-serratus_M_contig70 27798..28055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig70.18169.1

>prot_F-serratus_M_contig70.18169.1 ID=prot_F-serratus_M_contig70.18169.1|Name=mRNA_F-serratus_M_contig70.18169.1|organism=Fucus serratus male|type=polypeptide|length=86bp
ADEVAACIWLAGDRFQESLFTRVTSTWAIEEAKVPAIAAIGRNFSEVVAE
RLEATRLAVEAEVRVANEVATVRGEMALVESDWHGS
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mRNA from alignment at F-serratus_M_contig70:27798..28055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig70.18169.1 ID=mRNA_F-serratus_M_contig70.18169.1|Name=mRNA_F-serratus_M_contig70.18169.1|organism=Fucus serratus male|type=mRNA|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig70:27798..28055+ (Fucus serratus male)
GCGGACGAAGTGGCTGCGTGTATTTGGCTCGCGGGGGACAGGTTTCAAGA
GAGTTTGTTCACCCGCGTGACGAGCACGTGGGCAATTGAGGAGGCCAAGG
TACCGGCAATCGCCGCGATTGGTAGAAACTTCAGCGAGGTGGTGGCGGAG
CGACTCGAAGCAACTCGTCTAGCGGTTGAGGCCGAAGTGAGGGTGGCCAA
TGAAGTTGCCACGGTCAGGGGCGAGATGGCTTTGGTCGAGTCTGATTGGC
ACGGCAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig70:27798..28055+

>mRNA_F-serratus_M_contig70.18169.1 ID=mRNA_F-serratus_M_contig70.18169.1|Name=mRNA_F-serratus_M_contig70.18169.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig70:27798..28055+ (Fucus serratus male)
GCGGACGAAGTGGCTGCGTGTATTTGGCTCGCGGGGGACAGGTTTCAAGA
GAGTTTGTTCACCCGCGTGACGAGCACGTGGGCAATTGAGGAGGCCAAGG
TACCGGCAATCGCCGCGATTGGTAGAAACTTCAGCGAGGTGGTGGCGGAG
CGACTCGAAGCAACTCGTCTAGCGGTTGAGGCCGAAGTGAGGGTGGCCAA
TGAAGTTGCCACGGTCAGGGGCGAGATGGCTTTGGTCGAGTCTGATTGGC
ACGGCAGCGCGGACGAAGTGGCTGCGTGTATTTGGCTCGCGGGGGACAGG
TTTCAAGAGAGTTTGTTCACCCGCGTGACGAGCACGTGGGCAATTGAGGA
GGCCAAGGTACCGGCAATCGCCGCGATTGGTAGAAACTTCAGCGAGGTGG
TGGCGGAGCGACTCGAAGCAACTCGTCTAGCGGTTGAGGCCGAAGTGAGG
GTGGCCAATGAAGTTGCCACGGTCAGGGGCGAGATGGCTTTGGTCGAGTC
TGATTGGCACGGCAGC
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