mRNA_F-serratus_M_contig7.18157.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18157.1
Unique NamemRNA_F-serratus_M_contig7.18157.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7.18157.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.710e-9
Identity = 79/256 (30.86%), Postives = 114/256 (44.53%), Query Frame = 3 
Query:   12 DHPPVFSLTKSLSAFLWKKQRAISQGNINFIPRGQGVPPFE---------------------DLDDEAVPVEGVKVSPSQSLTDWAESKVEDSLANALESSPAETD-GLVATAEGQKLNEVSDN----RQPKR-PHQELPSLAVTLCD-DMLESPGDSPFSRAAMNLQSPEPKLPMA----PMPDLPKTSTSTLADS-VNITSPKGAVTSEN-PDFSPRYDREAIVKSMSVAQEEPDADGESDIQVPSQLAWPSAR 677
            D PP FSL  +LSAFL +K         + + + +                           D  D++ P +  +   S +L  W E+  E    ++L+    +     VA  E              ++P + P  + P+L +   + D    PG +PFSRAAMNLQSP P  P A    PMP LP         + + + +PK AV S +  D SP YDRE I ++M+ A EE   DG+SDI V S++ WPS R
Sbjct: 1653 DKPPAFSLKNALSAFLGRKDNGGIVAPADSVDQEEXXXXXXXXXXXXXXXXXXXXAIGTVTIDAADDSSPPDFARSPESHTLDMWPEAIGETQSKSSLDEGFVDVKISHVAMEEXXXXXXXXXXAMLLQEPAQGPAADTPTLVIQTEEADASLKPGQTPFSRAAMNLQSPGPDSPRALQGVPMPALPMPXXXXXXKAPMTLQTPKTAVNSRHISDASPMYDRETIARAMAQADEE--QDGDSDIVV-SRVEWPSER 1905
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BLAST of mRNA_F-serratus_M_contig7.18157.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.960e-9
Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 3 
Query:  333 PHQELPSLAVTLCD-DMLESPGDSPFSRAAMNLQSPEPK------------LPMAPMPDLPKTSTSTLADSVNITSPKGAVTSEN-PDFSPRYDREAIVKSMSVAQEEPDADGESDIQVPSQLAWPSAR 677
            P    P+L +   + D    PG +PFSRAAMNLQSP P             LPM P P +PK S       + + +PK AV   +  D SP YDREAI ++M+ A +E   DG+SDI V S++ WPS R
Sbjct: 1166 PAAHTPTLVIQAEEADASLKPGQTPFSRAAMNLQSPGPDSPKALQEVTMPALPMPPSPSMPKAS-------MTLQTPKTAVNPRHISDASPMYDREAIARAMAQADQE--QDGDSDIVV-SRVEWPSER 1284
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLC6_ECTSI4.710e-930.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEE7_9PHAE5.960e-941.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:1350601..1351916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007660.1
Exons2
Model size938
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18157.1prot_F-serratus_M_contig7.18157.1Fucus serratus malepolypeptideF-serratus_M_contig7 1350712..1351161 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932146.129628-UTR-F-serratus_M_contig7:1350600..13507111622932146.129628-UTR-F-serratus_M_contig7:1350600..1350711Fucus serratus maleUTRF-serratus_M_contig7 1350601..1350711 -
1690964170.1775157-UTR-F-serratus_M_contig7:1350600..13507111690964170.1775157-UTR-F-serratus_M_contig7:1350600..1350711Fucus serratus maleUTRF-serratus_M_contig7 1350601..1350711 -
1622932146.1685965-UTR-F-serratus_M_contig7:1351161..13511631622932146.1685965-UTR-F-serratus_M_contig7:1351161..1351163Fucus serratus maleUTRF-serratus_M_contig7 1351162..1351163 -
1690964170.1993127-UTR-F-serratus_M_contig7:1351161..13511631690964170.1993127-UTR-F-serratus_M_contig7:1351161..1351163Fucus serratus maleUTRF-serratus_M_contig7 1351162..1351163 -
1622932146.1947522-UTR-F-serratus_M_contig7:1351541..13519161622932146.1947522-UTR-F-serratus_M_contig7:1351541..1351916Fucus serratus maleUTRF-serratus_M_contig7 1351542..1351916 -
1690964170.2105007-UTR-F-serratus_M_contig7:1351541..13519161690964170.2105007-UTR-F-serratus_M_contig7:1351541..1351916Fucus serratus maleUTRF-serratus_M_contig7 1351542..1351916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932146.1458693-CDS-F-serratus_M_contig7:1350711..13511611622932146.1458693-CDS-F-serratus_M_contig7:1350711..1351161Fucus serratus maleCDSF-serratus_M_contig7 1350712..1351161 -
1690964170.1881068-CDS-F-serratus_M_contig7:1350711..13511611690964170.1881068-CDS-F-serratus_M_contig7:1350711..1351161Fucus serratus maleCDSF-serratus_M_contig7 1350712..1351161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18157.1

>prot_F-serratus_M_contig7.18157.1 ID=prot_F-serratus_M_contig7.18157.1|Name=mRNA_F-serratus_M_contig7.18157.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MLESPGDSPFSRAAMNLQSPEPKLPMAPMPDLPKTSTSTLADSVNITSPK
GAVTSENPDFSPRYDREAIVKSMSVAQEEPDADGESDIQVPSQLAWPSAR
LATSGARAVLADGGGSSGSGHSPGRAARLHDDSRRTSSSGNYYRYHDCD*
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mRNA from alignment at F-serratus_M_contig7:1350601..1351916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18157.1 ID=mRNA_F-serratus_M_contig7.18157.1|Name=mRNA_F-serratus_M_contig7.18157.1|organism=Fucus serratus male|type=mRNA|length=1316bp|location=Sequence derived from alignment at F-serratus_M_contig7:1350601..1351916- (Fucus serratus male)
GGCCGGAGGACGACCATCCTCCCGTGTTTTCTCTGACGAAGTCGCTCTCT
GCGTTCCTCTGGAAGAAGCAGCGGGCTATATCGCAAGGGAACATCAACTT
CATCCCGAGGGGACAAGGAGTTCCGCCCTTCGAAGATTTGGACGATGAGG
CCGTGCCTGTCGAGGGAGTAAAGGTTTCCCCGTCACAGTCGCTCACGGAT
TGGGCAGAGTCGAAGGTGGAAGACTCGCTGGCGAATGCGCTTGAAAGCAG
CCCTGCTGAAACCGATGGGCTGGTGGCGACTGCAGAGGGCCAGAAGCTCA
ATGAAGTCTCGGATAATCGACAACCGAAGAGACCTCACCAGGAGCTGCCG
TCTCTGGCGGTGACCCTTTGTGACGGTAAGTCGACTTGGATATTATTGGA
AGCTGTTAATATTTTTAACCAACGATTCAAAAATAAGAGAAAATTGTCTT
TTGGCAATGTTTGCTTGCGGTTTAATGCCCCCGCAATCCATGACGGGTGC
AGCGACGAAAGGTGACCCTTTGTGATAGTAAGTCGACTTGGATATTATTG
GAAGCTGTTAATATTTTTAACCAACGGTTCAAAAATAAGAGAAAATTGTC
TTTTGGCAATGTTTGCTTGCGGTTTAATGCCCCCGCAATCCATGACGGGT
GCAGCGACGAAATACCCCCCCCCCACCCCCCCACCCGTACCTTTTGAAGA
GCTGAAGTTCCCATCGAAACACGCCGCCGCCACATTTCACTACTAAAACT
CAGATATGCTGGAGAGCCCCGGCGATTCTCCGTTCTCCAGGGCCGCCATG
AACCTGCAAAGCCCCGAACCCAAGCTTCCTATGGCCCCGATGCCCGACCT
CCCAAAGACTTCGACTTCGACTCTCGCGGACAGCGTAAACATTACATCTC
CCAAGGGGGCCGTGACGAGCGAGAATCCTGACTTTAGCCCGAGGTACGAT
AGGGAAGCGATCGTGAAGTCGATGTCTGTAGCGCAAGAAGAGCCGGATGC
TGATGGAGAGAGTGACATCCAGGTACCGAGTCAATTAGCTTGGCCAAGCG
CTCGCCTGGCGACGTCCGGCGCAAGGGCTGTGCTAGCTGACGGCGGTGGC
AGCAGTGGCAGCGGTCACAGTCCAGGAAGGGCGGCCCGTTTGCACGATGA
TTCAAGAAGGACGAGCAGCAGCGGCAACTACTATCGTTACCACGACTGCG
ACTGAGCTGGAGTGAGAGCGAGACAAGGCAGGGCAGAGTGAAGAAAATAG
CTTTCTATCCCCATCAGGGAGGAGGCGTTTCGGAAACGGTGCAGCATTGT
GTTGCGGTCGATCTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7:1350601..1351916-

>mRNA_F-serratus_M_contig7.18157.1 ID=mRNA_F-serratus_M_contig7.18157.1|Name=mRNA_F-serratus_M_contig7.18157.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig7:1350601..1351916- (Fucus serratus male)
ATGCTGGAGAGCCCCGGCGATTCTCCGTTCTCCAGGGCCGCCATGAACCT
GCAAAGCCCCGAACCCAAGCTTCCTATGGCCCCGATGCCCGACCTCCCAA
AGACTTCGACTTCGACTCTCGCGGACAGCGTAAACATTACATCTCCCAAG
GGGGCCGTGACGAGCGAGAATCCTGACTTTAGCCCGAGGTACGATAGGGA
AGCGATCGTGAAGTCGATGTCTGTAGCGCAAGAAGAGCCGGATGCTGATG
GAGAGAGTGACATCCAGGTACCGAGTCAATTAGCTTGGCCAAGCGCTCGC
CTGGCGACGTCCGGCGCAAGGGCTGTGCTAGCTGACGGCGGTGGCAGCAG
TGGCAGCGGTCACAGTCCAGGAAGGGCGGCCCGTTTGCACGATGATTCAA
GAAGGACGAGCAGCAGCGGCAACTACTATCGTTACCACGACTGCGACTGA
ATGCTGGAGAGCCCCGGCGATTCTCCGTTCTCCAGGGCCGCCATGAACCT
GCAAAGCCCCGAACCCAAGCTTCCTATGGCCCCGATGCCCGACCTCCCAA
AGACTTCGACTTCGACTCTCGCGGACAGCGTAAACATTACATCTCCCAAG
GGGGCCGTGACGAGCGAGAATCCTGACTTTAGCCCGAGGTACGATAGGGA
AGCGATCGTGAAGTCGATGTCTGTAGCGCAAGAAGAGCCGGATGCTGATG
GAGAGAGTGACATCCAGGTACCGAGTCAATTAGCTTGGCCAAGCGCTCGC
CTGGCGACGTCCGGCGCAAGGGCTGTGCTAGCTGACGGCGGTGGCAGCAG
TGGCAGCGGTCACAGTCCAGGAAGGGCGGCCCGTTTGCACGATGATTCAA
GAAGGACGAGCAGCAGCGGCAACTACTATCGTTACCACGACTGCGACTGA
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