mRNA_F-serratus_M_contig7.18114.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7.18114.1
Unique NamemRNA_F-serratus_M_contig7.18114.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 7.340e-30
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 1
Query:   97 MSSIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKE 282
            MS++VYEEV L EM Y D++QMYYYECPCGDKFEISL+DLYDGED APCPSCTLQI+V+F+E
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEE 62          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.220e-22
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  103 SIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIF 276
            S+VYEEV LA+MT++  +QMY Y CPCGD FEISL+DL DGED APCPSCTL+IRV++
Sbjct:    4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLY 61          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.820e-20
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  109 VYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKEVTVATSEVGA 312
            VYEEV L +M Y++ + M++Y+CPCGD FEISL++L+DGED APCPSC+L+IRV+++E  +     GA
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPALPTGA 70          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A2P8AIP5_9PEZI (Diphthamide biosynthesis protein 3 n=1 Tax=Elsinoe australis TaxID=40998 RepID=A0A2P8AIP5_9PEZI)

HSP 1 Score: 87.4 bits (215), Expect = 4.730e-19
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   97 MSSIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKEVTVATSEVGAALSLFVAE 336
            M+  +Y+E+ + +MTY++T Q+Y+Y CPCGD+FEI L DL DGE+ A CPSC+L IRVIF E  +   + GA       E
Sbjct:    1 MADNIYDEIEIEDMTYDETLQLYHYPCPCGDRFEIGLGDLRDGEEIAVCPSCSLMIRVIFDEGDLPGDDGGAGQGAVAVE 80          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 86.7 bits (213), Expect = 5.160e-19
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  109 VYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKEVT 288
            VY+EV + +M ++  +Q+YYY CPCGD+F I L++LYDGED A CPSC+L IRVIF E T
Sbjct:    4 VYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEET 63          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: F9XA13_ZYMTI (DPH-type MB domain-containing protein (Fragment) n=3 Tax=Zymoseptoria TaxID=1047167 RepID=F9XA13_ZYMTI)

HSP 1 Score: 86.7 bits (213), Expect = 5.300e-19
Identity = 35/56 (62.50%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  109 VYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIF 276
            +Y+E+ + +MTY++T Q Y+Y CPCGD+FEI+++DL DGED A CPSC+LQIRVIF
Sbjct:    6 MYDEIEIEDMTYDETLQTYHYPCPCGDRFEINIEDLRDGEDIAVCPSCSLQIRVIF 61          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A0S6XF65_BLOB1 (DPH-type MB domain-containing protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XF65_BLOB1)

HSP 1 Score: 86.7 bits (213), Expect = 6.070e-19
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   97 MSSIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKE 282
            M+  +Y+E+ + +MT+++T Q+Y+Y CPCGD+FEI L DL DGED A CPSC+L IRV+F E
Sbjct:    1 MADNIYDEIEIEDMTFDETLQIYHYPCPCGDRFEIGLADLRDGEDVAVCPSCSLMIRVVFDE 62          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 86.3 bits (212), Expect = 6.710e-19
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  109 VYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKE 282
            VY+EV + +M Y+  +Q+YYY CPCGDKF I+L +LYDGED A CPSC+L +RV+F+E
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEE 60          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.280e-19
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  109 VYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKE 282
            VY+EV + +M +++ +Q+YYY CPCGDKF I L +LYDGED A CPSC+L IR+IF E
Sbjct:    3 VYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDE 60          
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.440e-19
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   49 TWPSKVPSIKRLGSSVMSSIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCPSCTLQIRVIFKE 282
            TW S+    K   S    S VY+EV + +M +   +Q YYY CPCGDKF I+L+DLYDGED A CPSC+L IRV+F E
Sbjct:    8 TWESRWQQHKGERSQRTMS-VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDE 84          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI7.340e-3079.03DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z4X0_9STRA1.220e-2270.69Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A7S2W7Y0_9STRA2.820e-2055.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P8AIP5_9PEZI4.730e-1948.75Diphthamide biosynthesis protein 3 n=1 Tax=Elsinoe... [more]
G4YJ90_PHYSP5.160e-1960.00DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
F9XA13_ZYMTI5.300e-1962.50DPH-type MB domain-containing protein (Fragment) n... [more]
A0A0S6XF65_BLOB16.070e-1956.45DPH-type MB domain-containing protein n=1 Tax=Fung... [more]
K3WTP3_GLOUD6.710e-1960.34DPH-type MB domain-containing protein n=1 Tax=Glob... [more]
A0A1V9ZHU1_9STRA7.280e-1960.34Diphthamide biosynthesis protein n=1 Tax=Achlya hy... [more]
A0A662Y1E6_9STRA7.440e-1953.85DPH-type MB domain-containing protein n=1 Tax=Noth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7contigF-serratus_M_contig7:72023..72831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue3e-23
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Exons2
Model size598
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7.18114.1prot_F-serratus_M_contig7.18114.1Fucus serratus malepolypeptideF-serratus_M_contig7 72234..72735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932135.0771585-UTR-F-serratus_M_contig7:72022..722331622932135.0771585-UTR-F-serratus_M_contig7:72022..72233Fucus serratus maleUTRF-serratus_M_contig7 72023..72233 -
1690964164.797013-UTR-F-serratus_M_contig7:72022..722331690964164.797013-UTR-F-serratus_M_contig7:72022..72233Fucus serratus maleUTRF-serratus_M_contig7 72023..72233 -
1622932135.1362891-UTR-F-serratus_M_contig7:72735..728311622932135.1362891-UTR-F-serratus_M_contig7:72735..72831Fucus serratus maleUTRF-serratus_M_contig7 72736..72831 -
1690964164.8295364-UTR-F-serratus_M_contig7:72735..728311690964164.8295364-UTR-F-serratus_M_contig7:72735..72831Fucus serratus maleUTRF-serratus_M_contig7 72736..72831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932135.0980186-CDS-F-serratus_M_contig7:72233..723341622932135.0980186-CDS-F-serratus_M_contig7:72233..72334Fucus serratus maleCDSF-serratus_M_contig7 72234..72334 -
1690964164.8105488-CDS-F-serratus_M_contig7:72233..723341690964164.8105488-CDS-F-serratus_M_contig7:72233..72334Fucus serratus maleCDSF-serratus_M_contig7 72234..72334 -
1622932135.11793-CDS-F-serratus_M_contig7:72545..727351622932135.11793-CDS-F-serratus_M_contig7:72545..72735Fucus serratus maleCDSF-serratus_M_contig7 72546..72735 -
1690964164.820037-CDS-F-serratus_M_contig7:72545..727351690964164.820037-CDS-F-serratus_M_contig7:72545..72735Fucus serratus maleCDSF-serratus_M_contig7 72546..72735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7.18114.1

>prot_F-serratus_M_contig7.18114.1 ID=prot_F-serratus_M_contig7.18114.1|Name=mRNA_F-serratus_M_contig7.18114.1|organism=Fucus serratus male|type=polypeptide|length=97bp
MSSIVYEEVVLAEMTYEDTDQMYYYECPCGDKFEISLQDLYDGEDTAPCP
SCTLQIRVIFKEVTVATSEVGAALSLFVAEACEVLRFQANYVPRYQ*
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mRNA from alignment at F-serratus_M_contig7:72023..72831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7.18114.1 ID=mRNA_F-serratus_M_contig7.18114.1|Name=mRNA_F-serratus_M_contig7.18114.1|organism=Fucus serratus male|type=mRNA|length=809bp|location=Sequence derived from alignment at F-serratus_M_contig7:72023..72831- (Fucus serratus male)
GCCAGACAGAGTCAGGCCATTACCTGTATCGTCTCTACGTGTACCACCAC GTGGCCGTCTAAAGTTCCCTCAATAAAACGCTTGGGAAGCTCAGTCATGT CTTCGATCGTATACGAAGAAGTGGTTCTTGCTGAGATGACGTACGAGGAC ACCGACCAAATGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCGAGAT ATCTCTTCAGGATCTTTACGATGGAGAGGACACCGCCCCTTGTCCCAGCT GCACCCTTCAGATTAGAGTCATATTCAAAGAGGTGAGCAGGGTAGCATAT TACGGATTACTCTGCTAGGTCCGTCATGACTTTTGTGGGGGAGAAACATT TCGATGCGGATCAATATCCTGTTGATCCAGCCGATGTGGTGGTACGTAAT ACATGGAGTCAGTAATTCTTGACGTGTTGCCGAACAACGCCTCTTTATCA TGTAAACAAATGTAGCTTTTTTCGCTGAACCCCGCTATCTGGGACAGCTG TGGCCACCTCGGAGGTAGGAGCCGCTCTATCACTATTTGTTGCAGAGGCG TGCGAAGTTCTGCGATTCCAGGCCAATTATGTCCCACGATATCAATAAAA GTATCCACGGCCAAAGTAGGCCGTTCGGAAAAGTGCGGCGGGATTAGGGG ACACCCGAGTCACCATGGGTTAAAAGTAAAACAGTGCAGGTAGCCCGACT TCAACGGCGGAGATCTAGCGGCCCCGGATAGATTCAGTGCAGTTTTGAAG CATTTTGGCTTTGTCGTGTGGGGGTGCGTGTGTATCCCTAAGCTTGTCGA TGATATTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7:72023..72831-

>mRNA_F-serratus_M_contig7.18114.1 ID=mRNA_F-serratus_M_contig7.18114.1|Name=mRNA_F-serratus_M_contig7.18114.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig7:72023..72831- (Fucus serratus male)
ATGTCTTCGATCGTATACGAAGAAGTGGTTCTTGCTGAGATGACGTACGA
GGACACCGACCAAATGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCG
AGATATCTCTTCAGGATCTTTACGATGGAGAGGACACCGCCCCTTGTCCC
AGCTGCACCCTTCAGATTAGAGTCATATTCAAAGAGGTGAATGTCTTCGA
TCGTATACGAAGAAGTGGTTCTTGCTGAGATGACGTACGAGGACACCGAC
CAAATGTACTACTACGAGTGCCCTTGCGGCGACAAGTTCGAGATATCTCT
TCAGGATCTTTACGATGGAGAGGACACCGCCCCTTGTCCCAGCTGCACCC
TTCAGATTAGAGTCATATTCAAAGAGGTGACTGTGGCCACCTCGGAGGTA
GGAGCCGCTCTATCACTATTTGTTGCAGAGGCGTGCGAAGTTCTGCGATT
CCAGGCCAATTATGTCCCACGATATCAATAACTGTGGCCACCTCGGAGGT
AGGAGCCGCTCTATCACTATTTGTTGCAGAGGCGTGCGAAGTTCTGCGAT
TCCAGGCCAATTATGTCCCACGATATCAATAA
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