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Homology
BLAST of mRNA_F-serratus_M_contig698.18092.1 vs. uniprot
Match: D7G6E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E8_ECTSI) HSP 1 Score: 352 bits (903), Expect = 2.070e-118 Identity = 186/315 (59.05%), Postives = 233/315 (73.97%), Query Frame = 1
Query: 1 MGNARSLSMIRHCIGAEVAPSVVKSLAGATQQIIEMLATMIMFAKTPARLKVRNMFDMFDFDLDGKLNPAETILMLRWSLLVAVAKSTGGVLPTTAGIEDIWHHIVQSGFAENGEYILFTQWVMFCSKTREVQILGKALDFNRGECRKALLSGLRAYLPAIVFGEEDSESAEAGTRLQGRTPQFR-----QKKKQTVAAKQDRNRFSRATALKIKEAFDSIDKEDSGYVNERQWKSLTKDTPLATSSDTSLFVRRERVGKISIVEALSEVYPFASDADLARMLQWISKGPSQPGAGRLVGRKLA-AERVEMILLF 927
MGNA S MIR C+G E+AP VVKSLAGATQ + EMLA + M+ K PARLKV+N+FD+FD DLDGKLN +ETI+MLR SLL +AKSTGGVLP + I+ IW HIV+ G+ + + F +W+ FCSKTREV LGK+LDFN+G CRK+L SG RA L A+V GE+D+ A L + PQ R +KK+ AA++ RNRF+R++ +KIKE FDSIDK+ SGYV+E +W+ LT+DTPLA S DT LF+ RER GKISIVE L EV+PFA DADLA+ML+WIS+ Q GA R+V +LA AER+EM LF
Sbjct: 1 MGNASSTEMIRRCVGLEIAPPVVKSLAGATQHVFEMLAVLTMYGKIPARLKVKNLFDLFDLDLDGKLNSSETIVMLR-SLLHGIAKSTGGVLPNISDIQAIWQHIVRLGYTDEEGLLPFARWITFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALT-KKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNPELAVAERLEMAELF 313
BLAST of mRNA_F-serratus_M_contig698.18092.1 vs. uniprot
Match: A0A6H5JDE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE5_9PHAE) HSP 1 Score: 326 bits (835), Expect = 2.130e-106 Identity = 183/366 (50.00%), Postives = 233/366 (63.66%), Query Frame = 1
Query: 1 MGNARSLSMIRHCIGAEVAPSVVKSLAGATQQIIE---------------------------------------------------MLATMIMFAKTPARLKVRNMFDMFDFDLDGKLNPAETILMLRWSLLVAVAKSTGGVLPTTAGIEDIWHHIVQSGFAENGEYILFTQWVMFCSKTREVQILGKALDFNRGECRKALLSGLRAYLPAIVFGEEDSESAEAGTRLQGRTPQFR-----QKKKQTVAAKQDRNRFSRATALKIKEAFDSIDKEDSGYVNERQWKSLTKDTPLATSSDTSLFVRRERVGKISIVEALSEVYPFASDADLARMLQWISKGPSQPGAGRLVGRKLA-AERVEMILLF 927
MGN S MIR C+G E+AP VVKSLAGATQ + E MLA + M+ K PARLKV+N+FD+FD D+DGKLN +E I+MLR SLL +AKSTGGVLP + IE IW HIV+ G+ + E + F +W+ FCSKTREV LGK+LDF++G CRK+L SG RA L A+V GE+D+ A L + PQ R +KK+ AA++ RNRF+R++ +KIKE FDS+DK+ SGYV+E +W+ LT+DTPLA S DT LF+ RER GKISIVE L E++PFA DADLA+ML+WIS+ +Q GA R V R+LA AER+EM LF
Sbjct: 1 MGNGSSTEMIRRCVGLEIAPPVVKSLAGATQHVFEAVEARTKAMDLPPGLDAVHVAQALGEGRGSQADLVVAIMETKGNGRIDVYEMLAVLTMYGKIPARLKVKNLFDLFDLDVDGKLNSSEAIVMLR-SLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEERLPFARWITFCSKTREVHALGKSLDFSKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALT-KKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSVDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCELHPFAGDADLAKMLEWISEETTQQGAARKVNRELAVAERLEMAELF 364
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EF-hand domain |
| Ec32 ortholog | Ec-10_001590.1 |
| Exons | 7 |
| Model size | 936 |
| Cds size | 936 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932131.3396928-CDS-F-serratus_M_contig698:267587..267692 | 1622932131.3396928-CDS-F-serratus_M_contig698:267587..267692 | Fucus serratus male | CDS | F-serratus_M_contig698 267588..267692 + |
| 1690964163.1012454-CDS-F-serratus_M_contig698:267587..267692 | 1690964163.1012454-CDS-F-serratus_M_contig698:267587..267692 | Fucus serratus male | CDS | F-serratus_M_contig698 267588..267692 + |
| 1622932131.3553245-CDS-F-serratus_M_contig698:268491..268619 | 1622932131.3553245-CDS-F-serratus_M_contig698:268491..268619 | Fucus serratus male | CDS | F-serratus_M_contig698 268492..268619 + |
| 1690964163.1150303-CDS-F-serratus_M_contig698:268491..268619 | 1690964163.1150303-CDS-F-serratus_M_contig698:268491..268619 | Fucus serratus male | CDS | F-serratus_M_contig698 268492..268619 + |
| 1622932131.3744516-CDS-F-serratus_M_contig698:269170..269285 | 1622932131.3744516-CDS-F-serratus_M_contig698:269170..269285 | Fucus serratus male | CDS | F-serratus_M_contig698 269171..269285 + |
| 1690964163.1287975-CDS-F-serratus_M_contig698:269170..269285 | 1690964163.1287975-CDS-F-serratus_M_contig698:269170..269285 | Fucus serratus male | CDS | F-serratus_M_contig698 269171..269285 + |
| 1622932131.393567-CDS-F-serratus_M_contig698:269639..269755 | 1622932131.393567-CDS-F-serratus_M_contig698:269639..269755 | Fucus serratus male | CDS | F-serratus_M_contig698 269640..269755 + |
| 1690964163.1385653-CDS-F-serratus_M_contig698:269639..269755 | 1690964163.1385653-CDS-F-serratus_M_contig698:269639..269755 | Fucus serratus male | CDS | F-serratus_M_contig698 269640..269755 + |
| 1622932131.4125955-CDS-F-serratus_M_contig698:270052..270221 | 1622932131.4125955-CDS-F-serratus_M_contig698:270052..270221 | Fucus serratus male | CDS | F-serratus_M_contig698 270053..270221 + |
| 1690964163.1482866-CDS-F-serratus_M_contig698:270052..270221 | 1690964163.1482866-CDS-F-serratus_M_contig698:270052..270221 | Fucus serratus male | CDS | F-serratus_M_contig698 270053..270221 + |
| 1622932131.4273908-CDS-F-serratus_M_contig698:270389..270506 | 1622932131.4273908-CDS-F-serratus_M_contig698:270389..270506 | Fucus serratus male | CDS | F-serratus_M_contig698 270390..270506 + |
| 1690964163.157755-CDS-F-serratus_M_contig698:270389..270506 | 1690964163.157755-CDS-F-serratus_M_contig698:270389..270506 | Fucus serratus male | CDS | F-serratus_M_contig698 270390..270506 + |
| 1622932131.4500356-CDS-F-serratus_M_contig698:271505..271691 | 1622932131.4500356-CDS-F-serratus_M_contig698:271505..271691 | Fucus serratus male | CDS | F-serratus_M_contig698 271506..271691 + |
| 1690964163.1726089-CDS-F-serratus_M_contig698:271505..271691 | 1690964163.1726089-CDS-F-serratus_M_contig698:271505..271691 | Fucus serratus male | CDS | F-serratus_M_contig698 271506..271691 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig698.18092.1 >prot_F-serratus_M_contig698.18092.1 ID=prot_F-serratus_M_contig698.18092.1|Name=mRNA_F-serratus_M_contig698.18092.1|organism=Fucus serratus male|type=polypeptide|length=312bp
MGNARSLSMIRHCIGAEVAPSVVKSLAGATQQIIEMLATMIMFAKTPARL KVRNMFDMFDFDLDGKLNPAETILMLRWSLLVAVAKSTGGVLPTTAGIED IWHHIVQSGFAENGEYILFTQWVMFCSKTREVQILGKALDFNRGECRKAL LSGLRAYLPAIVFGEEDSESAEAGTRLQGRTPQFRQKKKQTVAAKQDRNR FSRATALKIKEAFDSIDKEDSGYVNERQWKSLTKDTPLATSSDTSLFVRR ERVGKISIVEALSEVYPFASDADLARMLQWISKGPSQPGAGRLVGRKLAA ERVEMILLFQT* back to topmRNA from alignment at F-serratus_M_contig698:267588..271691+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig698.18092.1 ID=mRNA_F-serratus_M_contig698.18092.1|Name=mRNA_F-serratus_M_contig698.18092.1|organism=Fucus serratus male|type=mRNA|length=4104bp|location=Sequence derived from alignment at F-serratus_M_contig698:267588..271691+ (Fucus serratus male) ATGGGAAACGCGAGGAGTCTCTCGATGATAAGGCATTGCATCGGAGCGGA
GGTCGCCCCATCGGTTGTCAAGTCCCTTGCTGGCGCAACGCAACAGATAA
TCGAGGTACGTATGACAACAATGGGCACATACTGAAGTTCCTGTGACATC
ATCAAGTGAGTTGAGCCTGGTGATGATGCTACATCAATCAATGAATGATT
ACATACGAGCTTCACTTCACATGACTGTGGCCGCTACCTTCACTTCCCGT
TTGATCGCCAGGATACATGTTTCGGCGATTACAGTGTACCTGCTAACTAT
AGGCAGAGTACATCATCTCTTTCTTGGTGTCACAGGGCGTCGTCGCAAAA
ATCAAGGGGTTGGGTATAGTTCCAGGGTTATCACCCGCGGAAATCGCACG
GGTTCTCGGCGAAGCGCGAGGATGTCATGCCGAACAGGTGGTGGCGATCA
TGGAGCCCAAGACTTGTCGAAGGGTTGATGCGTACGAGGTGGGCTGCATC
TGTGGGGGGGCGTAACGACCAGACGATGGTGAAGTTTTCCCGCGCATTTC
CTGTCAAACTCTTGGAAGTATTATGTACTTCCTATACAGTTTGTTACTCC
CAAACTCAGAAGTCCTTGCCTAACTATGTTTATCATTATTTATTGATTTT
TGACGCGCGGACGTGCACAATACGATGAAAAGATTACTCTTGATTTCTAC
ACAAGACGAGGATATGTCCTAAAGAAAATGCGTGCAAGGCATCCGTTACC
ATTGCTTGGCTATCCACTTGCTTCGTTCTTCCGGTGTCGTGGTCCAACTC
GATCGCTTGAGGCTTGCGCGCTGGGTAGGCTCCTTGACTCGGGATTTTAT
TCTGTCAAACCCGAACCTGTAGGTCTTTCCCATCCTTCAACCACTCCTCC
TCAGATGCTTGCGACGATGATCATGTTTGCAAAGACTCCGGCACGACTTA
AAGTACGAAATATGTTCGACATGTTCGACTTCGATCTCGATGGCAAGCTC
AACCCTGCGGAGACTATCCTAATGCTAAGGTGGTTAATGCCCCCCAAGTT
TAAACCCGACACCGCTGTTCGTTTACTAAGTTTGAAGATTTCCCTTGCAG
TGTCTCCTACTACGTAGATTTCATCCTCGGTGATCATAATAGCCGCCTGA
TAATTTCTTCCCGGAACCTAGATCTTCCTCAAGATAACACTGATTGATGC
GATCGCCTTTTCAATTGACTATTAATATCAAGTAAACTCAGTAACAGGGG
GGAAAAGGAGGTTTGTAAATGTGGGAGACTTGCCATTGTTAAACAAATGA
GCCCCCCTTCGTGAAGGTTTAGACTTCTCGAGCGTTCCATGAAGACTTCG
CGGGCTAGGAAGGCTCCATGGGGGCTTCGGGAAGAGAGCGCGAGCCTTCA
CAAAGCCTTCACCCATCACCACGCGGGCTTCGTGGAGTCTTCTTGAAGGC
TTTACGAGGCTCTCTTGGGGTAATATTTTGGGAACCATTCGTTAAATAAT
GACAAGCCTCCTAAATGTGATGGGTCTGCGACAAATATTCCGATCAACTC
TGACAGCGTCTGTCATTTCGGTTTTCTCAACAGGTCATTGCTGGTGGCGG
TCGCCAAATCGACAGGTGGTGTTTTACCCACCACAGCCGGAATCGAAGAT
ATTTGGCATCACATCGTGCAATCCGGTTTCGCAGAAAACGGCGAATACGT
GAGTTTTTAACAGACTACTCAGAGACCGGTGCTTTGTTTAGAGAACGTGC
GCGAGCCATAGCCGTGCCCCGTGATGCCACAGAGTCAACGAACCACGGCG
AATCGCAAGCTATCCCACACCACGAGTCACCTGATCACATCCAACCAAGG
CTTGCGAAAGGGAAGTATCAGGCACCACCTTTATACGAAATATCCCTCAC
ACGAGCACGGATCACCCAAAACCACCTGGTAGGTTTGAGACGCCTCGGAG
TCCATCCCTGGCATCCGTCCTGAGGGTATGTCTTGTACCCCCCCGTCCAC
TAACCATTGAAACTCGCTTGTTTTCCTCCGCTCCATATCAAATTTCGTCA
AGATACTATTCACGCAATGGGTTATGTTTTGCTCGAAGACACGAGAAGTT
CAAATCCTGGGTAAAGCCCTCGACTTCAACAGAGGGGAGTGCCGGAAAGC
GCTTCTGTCTGGATTAAGGTAAGAGTAGCGATCTGAGGTCTGACCACGGG
CGATCGCCGCGCAGCCGATCGGCGTGGACGTCAAAGATTAAAAAGGCGCG
CGGAGGAGGCTCACATGATGTTTGCAAACGGATGGTCACCATGACGCAGT
CGATCGATTATGTCCTGATCTCTCGGGTGAATGGCTAAGACCTTCGGGAT
CGCGAGAGTGCCCTGCCCTCCGGGTTCCGTTGGAGAAAGCGTCTGATTGC
GTGATGACGAACCAAACCATCTTTGCTTTCCTGTGATCCCCTCGCCTCTT
CACATCACGACAAAGAGCGTATCTTCCCGCGATCGTTTTCGGGGAGGAAG
ACTCTGAATCGGCAGAAGCTGGGACAAGGCTCCAAGGCCGTACACCTCAA
TTTCGACAGAAAAAAAAACAGACGGTGGCAGCCAAACAAGACAGAAACAG
GTTCTCCCGGGCAACCGCGCTGAAGATCAAAGAGGTGCCGCGTAAAATAA
GAAGTCTTGTAAGGCGTGTCAGGTGTGCGTAGGGTCGGAATCGCTAGAGG
CCAGGGGAGTGAGCGCTGTTGCCCCCAAAATCTTGACTATATTTTGAGTC
GTATTTCCGTTTGTCCCGTCGACCCTTCCACCTCAACGTACCGACGCCGA
AGGCGTTCGATAGCATCGACAAGGAGGATAGCGGTTACGTCAATGAGCGA
CAGTGGAAAAGCCTGACGAAGGACACACCTTTAGCGACTTCTTCCGATAC
TTCCCTGTTCGTGCGGCGAGTAAGTATCACCCGCCTGGACGCCATTCCAA
TGACTCTTCGATGAACTAGCAATGCCCTACATAGTTACGTCGGTACTTTC
AACATGCTATAGCCACTTCATATCAATAGTGAGTGTGGGGAAGAGAGGCG
CATATTATTTAGACCATGATGACCTGGCAAGGCTGCACTCGTTTGGAGCT
ACCTTGAGGTTTACTGGCCCCGTGCCGGCGGACTCTCGACAGTGAACGCC
AACTGTGCGCAATTGCGTGACCCGATAAACTCGGGAATGACCCGACGGCA
TATGGCGGTTTGAAGAAATAAATGGACGCCGCCCCGGAACTCGAGAGAAA
TCCCGTACGTAAGCACCACATTCAGCCCAAGTATGGAGATGAGCAGGCTG
ACGCGGGAAGGGGCTGCCGAACCCATTTCGTGAGAGACCCAATTCTCAGG
CGCAAACGGGGACAGGGAAATATTAATTTTCTCTGTTCAGCTACGAGCAG
GATTGGCAACCTTACCCGGTTGATCCATACTCCTGCCATATGTGATGACC
ATACATACATACATGCATACCTAGTTATAGGGGGGACATAAGGTATACCT
CATTGTATTGGGGTGCGCAGACATGGCTCTACAGATCACTCAGAGAGCCG
AGATTGTTCCTTCGCCATTTCCCCGTTCATTATTTTGAACACTTGAGAAA
AAAATACTGAACACCGTGACTATGGCAGTAAGCTGACACGAGTAGGCCCA
CGAGCCGGCCCAAGGTCGCCGCAGTATTGATAGTAACGGTAAGCCTTTTT
TTTTTTTTTACATCACGGTCGGGGCGAAACGGTTGCTTCTCCAAGAACAG
AGGGAAAAAATAGGCTTCGAAGTACCATGACCACATGACAGGAACTGCCT
TGGGTCAAAAACTTCCTGCCGCAAGGCTCTAGGACGACGTAACGGTCGAT
ATAATGGCCGTTGTCCCCACGGTACGCATGCCTCCGCTCGTCGTCCATCT
GCTCTGACGTATCGGAAGGAGCGCGTAGGAAAAATATCGATAGTGGAGGC
GCTGTCCGAGGTGTACCCATTTGCCAGCGACGCGGATCTGGCGAGAATGC
TCCAGTGGATAAGCAAGGGGCCTTCACAGCCAGGCGCGGGGAGACTGGTC
GGCCGGAAACTCGCTGCTGAGCGGGTTGAGATGATCTTGCTCTTTCAAAC
GTAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig698:267588..271691+ >mRNA_F-serratus_M_contig698.18092.1 ID=mRNA_F-serratus_M_contig698.18092.1|Name=mRNA_F-serratus_M_contig698.18092.1|organism=Fucus serratus male|type=CDS|length=1872bp|location=Sequence derived from alignment at F-serratus_M_contig698:267588..271691+ (Fucus serratus male) ATGGGAAACGCGAGGAGTCTCTCGATGATAAGGCATTGCATCGGAGCGGA GGTCGCCCCATCGGTTGTCAAGTCCCTTGCTGGCGCAACGCAACAGATAA TCGAGATGGGAAACGCGAGGAGTCTCTCGATGATAAGGCATTGCATCGGA GCGGAGGTCGCCCCATCGGTTGTCAAGTCCCTTGCTGGCGCAACGCAACA GATAATCGAGATGCTTGCGACGATGATCATGTTTGCAAAGACTCCGGCAC GACTTAAAGTACGAAATATGTTCGACATGTTCGACTTCGATCTCGATGGC AAGCTCAACCCTGCGGAGACTATCCTAATGCTAAGGTGATGCTTGCGACG ATGATCATGTTTGCAAAGACTCCGGCACGACTTAAAGTACGAAATATGTT CGACATGTTCGACTTCGATCTCGATGGCAAGCTCAACCCTGCGGAGACTA TCCTAATGCTAAGGTGGTCATTGCTGGTGGCGGTCGCCAAATCGACAGGT GGTGTTTTACCCACCACAGCCGGAATCGAAGATATTTGGCATCACATCGT GCAATCCGGTTTCGCAGAAAACGGCGAATACGTCATTGCTGGTGGCGGTC GCCAAATCGACAGGTGGTGTTTTACCCACCACAGCCGGAATCGAAGATAT TTGGCATCACATCGTGCAATCCGGTTTCGCAGAAAACGGCGAATACATAC TATTCACGCAATGGGTTATGTTTTGCTCGAAGACACGAGAAGTTCAAATC CTGGGTAAAGCCCTCGACTTCAACAGAGGGGAGTGCCGGAAAGCGCTTCT GTCTGGATTAAGATACTATTCACGCAATGGGTTATGTTTTGCTCGAAGAC ACGAGAAGTTCAAATCCTGGGTAAAGCCCTCGACTTCAACAGAGGGGAGT GCCGGAAAGCGCTTCTGTCTGGATTAAGAGCGTATCTTCCCGCGATCGTT TTCGGGGAGGAAGACTCTGAATCGGCAGAAGCTGGGACAAGGCTCCAAGG CCGTACACCTCAATTTCGACAGAAAAAAAAACAGACGGTGGCAGCCAAAC AAGACAGAAACAGGTTCTCCCGGGCAACCGCGCTGAAGATCAAAGAGAGC GTATCTTCCCGCGATCGTTTTCGGGGAGGAAGACTCTGAATCGGCAGAAG CTGGGACAAGGCTCCAAGGCCGTACACCTCAATTTCGACAGAAAAAAAAA CAGACGGTGGCAGCCAAACAAGACAGAAACAGGTTCTCCCGGGCAACCGC GCTGAAGATCAAAGAGGCGTTCGATAGCATCGACAAGGAGGATAGCGGTT ACGTCAATGAGCGACAGTGGAAAAGCCTGACGAAGGACACACCTTTAGCG ACTTCTTCCGATACTTCCCTGTTCGTGCGGCGAGCGTTCGATAGCATCGA CAAGGAGGATAGCGGTTACGTCAATGAGCGACAGTGGAAAAGCCTGACGA AGGACACACCTTTAGCGACTTCTTCCGATACTTCCCTGTTCGTGCGGCGA GAGCGCGTAGGAAAAATATCGATAGTGGAGGCGCTGTCCGAGGTGTACCC ATTTGCCAGCGACGCGGATCTGGCGAGAATGCTCCAGTGGATAAGCAAGG GGCCTTCACAGCCAGGCGCGGGGAGACTGGTCGGCCGGAAACTCGCTGCT GAGCGGGTTGAGATGATCTTGCTCTTTCAAACGTAAGAGCGCGTAGGAAA AATATCGATAGTGGAGGCGCTGTCCGAGGTGTACCCATTTGCCAGCGACG CGGATCTGGCGAGAATGCTCCAGTGGATAAGCAAGGGGCCTTCACAGCCA GGCGCGGGGAGACTGGTCGGCCGGAAACTCGCTGCTGAGCGGGTTGAGAT GATCTTGCTCTTTCAAACGTAA back to top
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