mRNA_F-serratus_M_contig6925.18029.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6925.18029.1
Unique NamemRNA_F-serratus_M_contig6925.18029.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6925.18029.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 8.040e-7
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   55 AEVASETHLSSVATKLQAVSSSINASLEKSMVEIMVSVPR 174
            A+ + +THLS+VATKLQAVS++INA LEKSMVEIMVSVPR
Sbjct:   56 AQSSLDTHLSTVATKLQAVSATINAGLEKSMVEIMVSVPR 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6925.18029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF5_ECTSI8.040e-777.50Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6925contigF-serratus_M_contig6925:7096..9574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6925.18029.1prot_F-serratus_M_contig6925.18029.1Fucus serratus malepolypeptideF-serratus_M_contig6925 7096..9559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932117.1166792-CDS-F-serratus_M_contig6925:7095..73041622932117.1166792-CDS-F-serratus_M_contig6925:7095..7304Fucus serratus maleCDSF-serratus_M_contig6925 7096..7304 -
1690964155.6189752-CDS-F-serratus_M_contig6925:7095..73041690964155.6189752-CDS-F-serratus_M_contig6925:7095..7304Fucus serratus maleCDSF-serratus_M_contig6925 7096..7304 -
1622932117.1324458-CDS-F-serratus_M_contig6925:9522..95591622932117.1324458-CDS-F-serratus_M_contig6925:9522..9559Fucus serratus maleCDSF-serratus_M_contig6925 9523..9559 -
1690964155.6291535-CDS-F-serratus_M_contig6925:9522..95591690964155.6291535-CDS-F-serratus_M_contig6925:9522..9559Fucus serratus maleCDSF-serratus_M_contig6925 9523..9559 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932117.1473396-UTR-F-serratus_M_contig6925:9559..95741622932117.1473396-UTR-F-serratus_M_contig6925:9559..9574Fucus serratus maleUTRF-serratus_M_contig6925 9560..9574 -
1690964155.6434658-UTR-F-serratus_M_contig6925:9559..95741690964155.6434658-UTR-F-serratus_M_contig6925:9559..9574Fucus serratus maleUTRF-serratus_M_contig6925 9560..9574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6925.18029.1

>prot_F-serratus_M_contig6925.18029.1 ID=prot_F-serratus_M_contig6925.18029.1|Name=mRNA_F-serratus_M_contig6925.18029.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MAIRAPRHIRRLVAEVASETHLSSVATKLQAVSSSINASLEKSMVEIMVS
VPRVVTEIERLEGAIKTLHSELGNLTGQVRS*
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mRNA from alignment at F-serratus_M_contig6925:7096..9574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6925.18029.1 ID=mRNA_F-serratus_M_contig6925.18029.1|Name=mRNA_F-serratus_M_contig6925.18029.1|organism=Fucus serratus male|type=mRNA|length=2479bp|location=Sequence derived from alignment at F-serratus_M_contig6925:7096..9574- (Fucus serratus male)
GAGGAGAGGAGAGCAATGGCCATTCGGGCGCCCCGTCATATTCGGCGACT
GGGTGAGTGTTTGTGTCGAAGTACTTTTCACTGTGTGCATAGGTCTACTG
TAGTTCACGCTGCCTGCAAGCGCCAGATTGATTTGTTCTTGTTTGGTTTT
GACCATGTTATCCAAGTTTACCATATTGCACGTGGAGCAGGTGGGCGGGA
TGCCTTCTAGCAGCCATATCACTGATAGTTCACGAAGAAGTACATACAGA
GTGTTGACGGCTGACGGGCGTTTGGCGCAACGACCCCGTGCTTGCAGGCG
TCATGTCGTCCTCAGAGAAGATCCTTACTTTCGTAGAGAGAAAGCCCAAG
TTTCGATTGCTTTCCGATACCCGTACTCTATATTGCACACATCTTCAATA
CAAACGTCATGCCTGTACGAGGAGCTTCGATGCTTGCTTCGTCTGCGCGT
TCAGGCTAAACGGCAATTACCTGGTAGATGCAGACAACGCAGGTCTGTAG
TTGGGGGGTACCTCAGCCGTCAGGGGAACAGAAGAAATCTGCAGGACAAA
GTACCACTATTAATAGACACGTGGTCAATACTACACGGTTTGTGACGATA
CTTGTATCTATTCATAGAGCTGCAGACTAGAGATAATAGCTCCCTGGTCC
CCAAAACCGCCGTCGTTTCAACCAGACTTGAATGAGATCACATGAACACC
AGCGACAAAATTGAACCACATTTCCCACGGGCGGTTTGGGTGGGTTCAGA
GAGAACAAGTACAAGCAGGAGTACTATACCAGTATATAATACTTCTATAT
AATAACTACTGAACCTTTTATTGATGCGAGACGCAACCATCAATCGAGAC
TGTTCGTAAGCCTTCCGAGCATCCATACGGTTCGTTCAAGATGTCCACTT
CATACCAATAGACTATTAATAGTGGGTGTGTGAAAGAGAGGCGAATATTA
TTTGGTCCATGGTGACCTGCCAAGGCAGCACCCGTTTGGAACTATTAATA
CCTTGAGGTTTACTGGCCCTGTGCCGGTGGGCTCTCGGCAGTGAACGCCA
TCGGTACACAATTGCGTGACCCGATAAGCTCGGGACTGACCCGATGGCGT
ATGGCGGTTTAAAGGACGCCGCCGCGAACCTCGGGAGGAATCTCATAAGT
ATGCACCATATTAAGCCTGAGTATGGAGATGAGCAGGCTGACGCGTGACG
GGACTGTCGGACCCGTCTCGCGAGATCAATTTCTCAGGCGCGAACGGGGA
CAGGGAAATATTCATTTTCCCTGGTAAGCTGACCACGAGCAGGATTGGCA
ACCTTACCCGGTTGATCCATACTCCTGCTATATGTGTGACCATACGTATA
TACATACAAGTACCGTCCGGGGGAAACAGTGTGTCAAAACGTGTGGTTCA
GTAGCTACGTCCACTACGGCTGTACAGTACAGTACAGTATTATAGTACAT
GAGCAGCAACGGCGGTACAGTACCATACACTGCAGATGCAGAGTGCGCCA
GTATTTATAGTTCGTACAGCGTAAACTATGAAGTACTGGTAGTTTTTTTG
GGGTTGGGAACCAATACGCTGAATGTGAGAAATACCAGGGGCTCTGTATT
TGCAGCCTATGATCCCACCTAAACATGTTTGACATTTTCCCCCTGACTGA
GGGATGCTCAGAAGGTCTATTAATAGATGCGTTCAGATTTTTTTAACAGC
AGTGATTCTGCCTCAAAAGTGCGGCATACTGTACTGCTATTTTTTTATTG
TACGATCACACTATGATTGTGAACCCTGGCGCTAGGGTATTCTTGGTATG
TCACGTAACACCACATCAAGGCTGTTCCCGAATGTAAGTGCTCCCCACTC
CCAAGAATAATCTGGGTCTGGTGATATCAAGACGGCTGACCTTTGCAGCA
GTTGCGCTGTATCATGCACCAGTTATGTATTGATAGCTTGATTCCCCTCC
TCAAGTACCAGTACTATTATATTATACTGTACCTTTTCTCCCCGGAACTG
ACCCTCCGCGGTACAGTGTACTATTTATGTATGGTCACACATATAACAAG
AGTATGGACCAACCGGGTAAGGTTGCAAGCCAATCCTGCACGTGGTCGGC
TAAACAGGGAAACTTGATATTCCCTGTCCGCGTTCGCGCCTGAGAATACG
GTGTACGGAATGCTTCGCCAACAATTACCAGGTAGATAAGAAAGAAGTGT
AAGTACCTTTGGCTGGCCGCCTCCGCAACCGCCGTAATCGCGACCTCAAA
CCTCCAATGAACGATGGCAGTGGCGGAAGTGGCCTCGGAAACCCACCTAT
CCAGCGTGGCGACCAAGCTGCAAGCAGTGTCATCGAGCATCAACGCCAGC
CTGGAGAAGAGCATGGTGGAAATCATGGTTTCTGTCCCTCGTGTGGTGAC
CGAGATAGAGCGGCTCGAGGGAGCTATCAAGACGCTCCACTCCGAGCTTG
GCAACCTCACCGGCCAGGTGCGCTCTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6925:7096..9574-

>mRNA_F-serratus_M_contig6925.18029.1 ID=mRNA_F-serratus_M_contig6925.18029.1|Name=mRNA_F-serratus_M_contig6925.18029.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6925:7096..9574- (Fucus serratus male)
ATGGCCATTCGGGCGCCCCGTCATATTCGGCGACTGGATGGCCATTCGGG
CGCCCCGTCATATTCGGCGACTGGTGGCGGAAGTGGCCTCGGAAACCCAC
CTATCCAGCGTGGCGACCAAGCTGCAAGCAGTGTCATCGAGCATCAACGC
CAGCCTGGAGAAGAGCATGGTGGAAATCATGGTTTCTGTCCCTCGTGTGG
TGACCGAGATAGAGCGGCTCGAGGGAGCTATCAAGACGCTCCACTCCGAG
CTTGGCAACCTCACCGGCCAGGTGCGCTCTTGATGGCGGAAGTGGCCTCG
GAAACCCACCTATCCAGCGTGGCGACCAAGCTGCAAGCAGTGTCATCGAG
CATCAACGCCAGCCTGGAGAAGAGCATGGTGGAAATCATGGTTTCTGTCC
CTCGTGTGGTGACCGAGATAGAGCGGCTCGAGGGAGCTATCAAGACGCTC
CACTCCGAGCTTGGCAACCTCACCGGCCAGGTGCGCTCTTGA
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