mRNA_F-serratus_M_contig6907.18004.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6907.18004.1
Unique NamemRNA_F-serratus_M_contig6907.18004.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.240e-9
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFK-GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            RS + L RVF DL    D    GG  Y MI  DDF+R  W YFL  KSDAA+AFR FLA
Sbjct:  625 RSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLA 683          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.770e-9
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFK-GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            RS + L RVF DL    D    GG  Y MI  DDF+R  W YFL  KSDAA+AFR FLA
Sbjct:   30 RSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLA 88          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5KL99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL99_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.480e-7
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFK-GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            RS R LQRVF DLS  +     GG  Y +I  DD+SR+   YFL H+SDAA AF+ +LA
Sbjct:  176 RSVRKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYSRWNRVYFLKHESDAADAFKGYLA 234          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.660e-7
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   16 LQRVFFDLSTTSDCFK-GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            + RVF DL         GG  Y MI  DDF+R AW YFL +KSDAA+AFR FLA
Sbjct:  328 IGRVFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLA 381          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: J6FCP9_TRIAS (Integrase catalytic domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6FCP9_TRIAS)

HSP 1 Score: 54.3 bits (129), Expect = 4.660e-7
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFKGGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            R+  PL+ +  DL       +GGARY+M+  DD++RY W YFL  KSDA   F+ + A
Sbjct:  665 RADAPLELIHSDLCEIGTRSEGGARYMMLLIDDYTRYTWVYFLAKKSDALKCFKEWQA 722          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A225X1D5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1D5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.660e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    7 TRPLQRVFFD-LSTTSDCFKGGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFL 171
            TRPL+ V  D +       KGGARY+++  DD+SRY   YFL  KS+ A  F+ +L
Sbjct:    3 TRPLELVHTDVMGPMKTKSKGGARYVLVFVDDYSRYVVAYFLKKKSEVANKFKTYL 58          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5JTY1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY1_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.650e-5
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFK--GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            R+ + L R+F DL      FK  GG  Y +I  DD +R+   +FL HKSDAAAAF R+LA
Sbjct:  229 RAAKKLFRLFLDLGGRMQ-FKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFERYLA 287          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5K148_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K148_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.710e-5
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 1
Query:   64 GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            GG  Y MI  D F+R  WTYFL  KSDAA+AFR FLA
Sbjct:   20 GGKHYPMIVKDYFTRRTWTYFLESKSDAASAFRGFLA 56          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A1Y1LVU9_PHOPY (Uncharacterized protein n=3 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LVU9_PHOPY)

HSP 1 Score: 48.9 bits (115), Expect = 3.760e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLS--TTSDCFKGGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFL 171
            R+ RPL R+  D+      +   GG  Y+++  DD+SRYA TY + HKS+A A   +FL
Sbjct:  798 RANRPLARIHTDVMGPIKPESHPGGNNYVIVFVDDYSRYAKTYCMKHKSEAGACLEKFL 856          
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 9.540e-5
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 RSTRPLQRVFFDLSTTSDCFK--GGARYIMIANDDFSRYAWTYFLPHKSDAAAAFRRFLA 174
            R+ + L R+F DL      FK  GG  Y +I  DD +R+   +F+ HKSDAAAAF R+LA
Sbjct:   45 RAAKNLFRLFLDLRGRMQ-FKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLA 103          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6907.18004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K2M6_9PHAE4.240e-955.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKD5_9PHAE5.770e-955.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL99_9PHAE2.480e-752.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE4.660e-755.56Integrase catalytic domain-containing protein n=1 ... [more]
J6FCP9_TRIAS4.660e-743.10Integrase catalytic domain-containing protein n=2 ... [more]
A0A225X1D5_9STRA1.660e-544.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTY1_9PHAE2.650e-548.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K148_9PHAE2.710e-564.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A1Y1LVU9_PHOPY3.760e-540.68Uncharacterized protein n=3 Tax=Photinus pyralis T... [more]
A0A6H5JF14_9PHAE9.540e-546.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6907contigF-serratus_M_contig6907:1..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.8969703-CDS-F-serratus_M_contig6907:0..1741622932111.8969703-CDS-F-serratus_M_contig6907:0..174Fucus serratus maleCDSF-serratus_M_contig6907 1..174 +
1690964152.887601-CDS-F-serratus_M_contig6907:0..1741690964152.887601-CDS-F-serratus_M_contig6907:0..174Fucus serratus maleCDSF-serratus_M_contig6907 1..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6907.18004.1prot_F-serratus_M_contig6907.18004.1Fucus serratus malepolypeptideF-serratus_M_contig6907 1..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6907.18004.1

>prot_F-serratus_M_contig6907.18004.1 ID=prot_F-serratus_M_contig6907.18004.1|Name=mRNA_F-serratus_M_contig6907.18004.1|organism=Fucus serratus male|type=polypeptide|length=58bp
RSTRPLQRVFFDLSTTSDCFKGGARYIMIANDDFSRYAWTYFLPHKSDAA
AAFRRFLA
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mRNA from alignment at F-serratus_M_contig6907:1..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6907.18004.1 ID=mRNA_F-serratus_M_contig6907.18004.1|Name=mRNA_F-serratus_M_contig6907.18004.1|organism=Fucus serratus male|type=mRNA|length=174bp|location=Sequence derived from alignment at F-serratus_M_contig6907:1..174+ (Fucus serratus male)
CGATCAACTCGTCCTCTCCAGCGCGTCTTCTTCGACCTCTCGACCACGTC AGATTGCTTCAAAGGGGGAGCAAGGTACATCATGATCGCGAACGACGATT TCTCGCGGTATGCGTGGACGTACTTTCTACCGCACAAGTCCGATGCCGCC GCTGCGTTCCGGCGCTTTCTCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6907:1..174+

>mRNA_F-serratus_M_contig6907.18004.1 ID=mRNA_F-serratus_M_contig6907.18004.1|Name=mRNA_F-serratus_M_contig6907.18004.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig6907:1..174+ (Fucus serratus male)
CGATCAACTCGTCCTCTCCAGCGCGTCTTCTTCGACCTCTCGACCACGTC
AGATTGCTTCAAAGGGGGAGCAAGGTACATCATGATCGCGAACGACGATT
TCTCGCGGTATGCGTGGACGTACTTTCTACCGCACAAGTCCGATGCCGCC
GCTGCGTTCCGGCGCTTTCTCGCCCGATCAACTCGTCCTCTCCAGCGCGT
CTTCTTCGACCTCTCGACCACGTCAGATTGCTTCAAAGGGGGAGCAAGGT
ACATCATGATCGCGAACGACGATTTCTCGCGGTATGCGTGGACGTACTTT
CTACCGCACAAGTCCGATGCCGCCGCTGCGTTCCGGCGCTTTCTCGCC
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