mRNA_F-serratus_M_contig6887.17946.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6887.17946.1
Unique NamemRNA_F-serratus_M_contig6887.17946.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.720e-47
Identity = 89/175 (50.86%), Postives = 109/175 (62.29%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCEPNSFSCMDPDSGCVNSS--LLNYVNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGYD----------FVCLDPNSECA---DPTLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
             GDG+C    NNE CG+DGGDCCECTCV   + D SC  NS +C+DP + CV+     ++ V   G V S+GNG CD  NNNE CG+DGGDCCECTC P  + ++G D          F C+DPN+ C    D TL    NC  +A  +G+G CD  NN EAC +DGGDCCECTC
Sbjct:   61 FGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS-ACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQP-LDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTC 231          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.080e-41
Identity = 84/175 (48.00%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPERD-----ASCEPNSFSCMDPDSGCVNSSLLNYVNCNGDVTS-IGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGY------DFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
             GDGYC    NN  CG+DGGDCCECTC  NP  D      S +   F+C+DPD+ CV+   +        VTS +GNG CD  NNNE CG+D GDCCECTC    + ++ Y       F C+DP + C D    T+    NC G    +GDG CD +NN E CG+DGGDCCECTC
Sbjct:   29 FGDGYCQLQNNNAECGYDGGDCCECTCQ-NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.310e-40
Identity = 82/172 (47.67%), Postives = 104/172 (60.47%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPERD------ASCEPNSFSCMDPDSGCVNSSLLNY-VNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPD--CEGENGYDFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            +GDG+C    NNE CG+DGGDCCECTC V  + D       +C    F+C+DP + CVN   +   V+ + D   +G+G CD  NNN AC +DGGDCCECTC P+  C G +G  F C+DP + C D    T+    NC  L   +G+G CD  NN E C +DGGDCCECTC
Sbjct:  109 LGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACG-EGFACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGGRSG--FACIDPGAPCVDDDSVTVDMIDNCDYLR-VMGNGWCDEENNNELCAYDGGDCCECTC 276          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.280e-40
Identity = 83/179 (46.37%), Postives = 103/179 (57.54%), Query Frame = 1
Query:    7 SSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPER------DASCEPN---SFSCMDPDSGCVNSSLLNYVNCNGDVTS-IGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGY----DFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            S IG+G C    NNE C +DGGDCCECTC  +P R         C+      F+C+DPD+ CV+  ++     +   T  IGNG CD  NN+  C +DGGDCCECTC    +G   Y     F C+DP +EC D    T  +Y +C G   RIGDG CD  NN E CG+DGGDCC+CTC
Sbjct:  164 SRIGNGACDSLLNNEDCAYDGGDCCECTC--DPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHC-GWVTRIGDGMCDDENNKEECGFDGGDCCDCTC 339          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.980e-39
Identity = 83/181 (45.86%), Postives = 104/181 (57.46%), Query Frame = 1
Query:    1 YASSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCEPNSFSCMDPDSGCVNSSLLN---YVNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGYD-----------FVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            +++ IGDGYC  + N   C +DGGDCC CTC    + D  C    F+C+DP++ CV+   +    + NC   V  IGNG CD  NN EACG+DGGDCCECTC    E E+ YD           F C+DP++ C D    T+    NC G    IG+G CD  NN E CG+DGGDCC CTC
Sbjct:  127 WSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCM--WFACIDPEAACVDDDDITVDMFENCEYPV-DIGNGWCDEANNIEACGYDGGDCCECTC----EYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 299          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 5.040e-39
Identity = 74/156 (47.44%), Postives = 96/156 (61.54%), Query Frame = 1
Query:   43 NNEACGWDGGDCCECTCVVNPER--DASCEPNSFSCMDPDSGCVNSSLLNYVNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGY-DFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            N E C +D GDCC+CTC +  +   D SC    F+C+DP++ CV+  +   +    D  + G+G C+ YNNNE CG+DGGDCCECTC  D   E G  +F C+DP + C D    T     NC  +   +GDG CD+YNNIE C +DGGDCCECTC
Sbjct:    6 NIEECDYDAGDCCQCTCGIESDDLPDFSCV--DFACVDPNAPCVDDDVTEGMF--EDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENC--MMEYLGDGYCDTYNNIEICDYDGGDCCECTC 155          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.430e-38
Identity = 78/175 (44.57%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 YASSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCEPNSFSCMDPDSGCVNSSLLNY---VNCN---GDVTSIGNGLCDSYNNNEACGWDGGDCCECTC---TPDCEGENGYDFVCLDPNSECADPTLLK--YTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            Y +SIGDG+C    NNE C +DGGDCCECTCV   +    C   +F+C+DP + CV+   +      +C+   G V  +GNG C+  NN E C +D GDCC+CTC   + D    +  DF C+DPN+ C D  + +  + +C       GDG C+ YNN E CG+DGGDCCECTC
Sbjct:   70 YVASIGDGFCSDENNNEVCDYDGGDCCECTCV---DAFYPCGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNNEQCGYDGGDCCECTC 237          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.890e-37
Identity = 84/192 (43.75%), Postives = 106/192 (55.21%), Query Frame = 1
Query:    7 SSIGDGYCHYSYNNEACGWDGGDCCECTCVV---------NPERDASCEP--NSFSCMDPDSGCVNSSLLN---YVNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCT-PDCE------------GENGYDFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            S +GDGYC    NNE CG+DGGDCCECTCV          + + D  C    + F+C+DP + CV    +      NC G V  +G+G C   NNNE CG+DGGDCCECTC  P  +            G  G  F C+DP++ C D    T+    +C  ++  IGDG C+  NN EAC +DGGDCCECTC
Sbjct:   57 SELGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENC-GYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESCDTVS--IGDGYCNMDNNNEACAYDGGDCCECTC 245          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.310e-37
Identity = 83/176 (47.16%), Postives = 102/176 (57.95%), Query Frame = 1
Query:   10 SIGDGYCHYSYNNEACGWDGGDCCECTCVVNPER---DASC--EPNSFSCMDPDSGCVN----SSLLNYV---NCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGYDFVCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            +IGDG C    N E C +DGGDCC CTC V  +    D S   E   F+C+DPD+ CVN    ++ L  V    C G++  + +G CD  NNNE CG+DGGDCC CTC  D        F C+DP++ECAD    T+    NC G+   IGDG CD  NN E C +DGGDCC CTC
Sbjct:  103 AIGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSAECADDDDVTVDTVENC-GVR-SIGDGQCDLDNNREECHYDGGDCCSCTC 276          
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.650e-34
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   58 GWDGGDCCECTCVVNPERD-----ASCEPNSFSCMDPDSGCVNSSLLNY-VNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCTPDCEGENGYDF----VCLDPNSECADP---TLLKYTNCTGLAGRIGDGDCDSYNNIEACGWDGGDCCECTC 492
            G+DGGDCCECTCV NP  D      S + + F+C+DPD+ CV+   +   +  N D   +G+G CD  NNNE CG+DGGDCCECTC    + ++ +       C+DP++ C D    T +    C  + G +GDG CD  NN E CG+DGGDCCECTC
Sbjct:   20 GYDGGDCCECTCV-NPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQNCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDDITAVMVEECGWVRG-VGDGWCDEDNNNELCGYDGGDCCECTC 175          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6887.17946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI2.720e-4750.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI3.080e-4148.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI1.310e-4047.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI3.280e-4046.37Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI1.980e-3945.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSR3_ECTSI5.040e-3947.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE1.430e-3844.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE2.890e-3743.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE4.310e-3747.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE4.650e-3446.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6887contigF-serratus_M_contig6887:11450..11941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D7G5Y7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932101.4922183-CDS-F-serratus_M_contig6887:11449..119411622932101.4922183-CDS-F-serratus_M_contig6887:11449..11941Fucus serratus maleCDSF-serratus_M_contig6887 11450..11941 +
1690964147.4113395-CDS-F-serratus_M_contig6887:11449..119411690964147.4113395-CDS-F-serratus_M_contig6887:11449..11941Fucus serratus maleCDSF-serratus_M_contig6887 11450..11941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6887.17946.1prot_F-serratus_M_contig6887.17946.1Fucus serratus malepolypeptideF-serratus_M_contig6887 11450..11941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6887.17946.1

>prot_F-serratus_M_contig6887.17946.1 ID=prot_F-serratus_M_contig6887.17946.1|Name=mRNA_F-serratus_M_contig6887.17946.1|organism=Fucus serratus male|type=polypeptide|length=164bp
YASSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCEPNSFSCMD
PDSGCVNSSLLNYVNCNGDVTSIGNGLCDSYNNNEACGWDGGDCCECTCT
PDCEGENGYDFVCLDPNSECADPTLLKYTNCTGLAGRIGDGDCDSYNNIE
ACGWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig6887:11450..11941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6887.17946.1 ID=mRNA_F-serratus_M_contig6887.17946.1|Name=mRNA_F-serratus_M_contig6887.17946.1|organism=Fucus serratus male|type=mRNA|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6887:11450..11941+ (Fucus serratus male)
TATGCTAGTTCAATAGGTGACGGATACTGCCATTACAGTTACAACAACGA GGCCTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA ACCCCGAAAGAGACGCCAGCTGTGAGCCAAATAGCTTCTCGTGTATGGAC CCAGACTCCGGATGCGTTAACTCAAGCCTTCTCAACTATGTCAACTGCAA TGGAGATGTGACATCCATCGGCAATGGTTTGTGTGACTCCTACAACAACA ATGAAGCGTGTGGCTGGGACGGAGGGGACTGCTGCGAGTGCACATGCACC CCTGATTGTGAGGGTGAAAATGGGTATGATTTTGTTTGTTTGGACCCAAA CTCAGAATGCGCTGACCCAACTCTCCTCAAGTATACCAACTGCACTGGGC TTGCCGGCCGCATTGGCGACGGGGATTGCGACTCCTACAACAATATCGAG GCTTGTGGCTGGGACGGAGGTGACTGCTGTGAGTGCACATGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6887:11450..11941+

>mRNA_F-serratus_M_contig6887.17946.1 ID=mRNA_F-serratus_M_contig6887.17946.1|Name=mRNA_F-serratus_M_contig6887.17946.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig6887:11450..11941+ (Fucus serratus male)
TATGCTAGTTCAATAGGTGACGGATACTGCCATTACAGTTACAACAACGA
GGCCTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA
ACCCCGAAAGAGACGCCAGCTGTGAGCCAAATAGCTTCTCGTGTATGGAC
CCAGACTCCGGATGCGTTAACTCAAGCCTTCTCAACTATGTCAACTGCAA
TGGAGATGTGACATCCATCGGCAATGGTTTGTGTGACTCCTACAACAACA
ATGAAGCGTGTGGCTGGGACGGAGGGGACTGCTGCGAGTGCACATGCACC
CCTGATTGTGAGGGTGAAAATGGGTATGATTTTGTTTGTTTGGACCCAAA
CTCAGAATGCGCTGACCCAACTCTCCTCAAGTATACCAACTGCACTGGGC
TTGCCGGCCGCATTGGCGACGGGGATTGCGACTCCTACAACAATATCGAG
GCTTGTGGCTGGGACGGAGGTGACTGCTGTGAGTGCACATGCTATGCTAG
TTCAATAGGTGACGGATACTGCCATTACAGTTACAACAACGAGGCCTGTG
GGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAAACCCCGAA
AGAGACGCCAGCTGTGAGCCAAATAGCTTCTCGTGTATGGACCCAGACTC
CGGATGCGTTAACTCAAGCCTTCTCAACTATGTCAACTGCAATGGAGATG
TGACATCCATCGGCAATGGTTTGTGTGACTCCTACAACAACAATGAAGCG
TGTGGCTGGGACGGAGGGGACTGCTGCGAGTGCACATGCACCCCTGATTG
TGAGGGTGAAAATGGGTATGATTTTGTTTGTTTGGACCCAAACTCAGAAT
GCGCTGACCCAACTCTCCTCAAGTATACCAACTGCACTGGGCTTGCCGGC
CGCATTGGCGACGGGGATTGCGACTCCTACAACAATATCGAGGCTTGTGG
CTGGGACGGAGGTGACTGCTGTGAGTGCACATGC
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