mRNA_F-serratus_M_contig685.17913.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig685.17913.1
Unique NamemRNA_F-serratus_M_contig685.17913.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig685.17913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig685contigF-serratus_M_contig685:165011..168309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size427
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932093.8012884-CDS-F-serratus_M_contig685:165012..1652061622932093.8012884-CDS-F-serratus_M_contig685:165012..165206Fucus serratus maleCDSF-serratus_M_contig685 165013..165206 -
1690964143.901167-CDS-F-serratus_M_contig685:165012..1652061690964143.901167-CDS-F-serratus_M_contig685:165012..165206Fucus serratus maleCDSF-serratus_M_contig685 165013..165206 -
1622932093.869227-CDS-F-serratus_M_contig685:168080..1683091622932093.869227-CDS-F-serratus_M_contig685:168080..168309Fucus serratus maleCDSF-serratus_M_contig685 168081..168309 -
1690964143.9113607-CDS-F-serratus_M_contig685:168080..1683091690964143.9113607-CDS-F-serratus_M_contig685:168080..168309Fucus serratus maleCDSF-serratus_M_contig685 168081..168309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig685.17913.1prot_F-serratus_M_contig685.17913.1Fucus serratus malepolypeptideF-serratus_M_contig685 165013..168309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig685.17913.1

>prot_F-serratus_M_contig685.17913.1 ID=prot_F-serratus_M_contig685.17913.1|Name=mRNA_F-serratus_M_contig685.17913.1|organism=Fucus serratus male|type=polypeptide|length=141bp
SIQALNRLTLDGNNERKTSEKEDSDTKIKKLEVLLFPNTNRSSNAVGKAD
TSSVNRRLVTRDKQHDRPTSLASHEKGGLRASSTRPRVASLQATVRDDEG
VMFKTVTSATLVEDRPILKKSAGQDKHRWADICNDESNAGT
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mRNA from alignment at F-serratus_M_contig685:165011..168309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig685.17913.1 ID=mRNA_F-serratus_M_contig685.17913.1|Name=mRNA_F-serratus_M_contig685.17913.1|organism=Fucus serratus male|type=mRNA|length=3299bp|location=Sequence derived from alignment at F-serratus_M_contig685:165011..168309- (Fucus serratus male)
TCAATCCAAGCTCTTAATAGATTAACCTTGGATGGGAATAATGAACGGAA
AACGTCCGAGAAGGAAGATAGCGATACAAAAATAAAGAAATTAGAAGTGC
TCTTATTTCCGAATACAAACCGCTCGTCGAACGCAGTCGGCAAGGCAGAC
ACGTCGAGCGTCAATCGAAGGCTTGTGACACGCGACAAGCAGCACGACCG
ACCTACGTCGCTAGCCAGTCACGAAAAAGGTAAGATAAAACCGGAGCGAA
ACCAAGATGGTAAAGGCCTGATCAGCCCCGGAACATTTTTGGGGCTCTCC
TAAATATCCAGATTTAGGTATGATGAAACGACTTACTCGAGTAATGCCTA
AGGTAGCCTCGAGGAGTAAGGACGTAGTAGGGGAAACGCCCGACGGTACC
AAAACAACAAGGAAAACACGTAACAAAGACGTGACCTCTAACCCCCTCCC
CGGGGACGCAAACGGGTTGAGCCCATACCGCACGATGAATACAATGGGTG
CTGCCGGGTGCGTTGAGGAGAAAAAAACGAAACGACATCACATGTCACTG
AAAAACTCAAATCGAGAAAGGCGTTGTAACAGACAAGATAAAACTGGAAA
CACAAGTCTGACACACAACGCGAGGATGCAAATGGATAGCGATAAGGAAA
CTGGACTAGCCGACAGTCAATGCTTTAAAACATTTGCTCCTTTTCGGTCG
TCGACACATTTTTTTAATAATGTGTGATAATCCGACTAGAAAACGTGTCA
GAGGACAGGTTAAAATGAACCGTGCCGAGGACATGGTAAAAACACGGAGA
ATATTCGTGACTCAAAAGTACAACAAGCGAAGTAAGCTACAAGTACTGCA
AAATTCAGTGTGCAGTTTCAAGGAACTAACGGTACGCTTGAATTTACATC
GGGCTAGACTGAATTCTGAATCAAGTCTAGTACAGAACATAGGGGTGAAA
AGTAAGGAGGACATCGGTCCATATCACGAAATAATGGGCACCCCTTTTGC
AGGACATCACACTGATGAATGTGGGATGACCCTGGCAAAAAAATAAAATA
ATAATCAGGCAAAGGAGCCAGTTTCAAATCTGTTTTCAGATCGCTTCCTG
GTCATTGGTCAGGCTCGGGGGCAAGATGAAACGAGTGAGAATCGACTCCA
CGAGTGGCATGCGAGGAGCAATAGTCTCCGTCGCGACCATGCCTACAAAA
GAGAGATGATGCAGTTAATACCAACATTCGAACTTCAAGCTTACGTAGGA
TTGACCACCCTCTAAGTTGAGAGGGAGGATCGCGGATAGCTGAAAGGCAA
AAAGATAGGCGGACCGCTATTATCGCCGTATCATCAGAGCATAGACAAGG
TATGCATGATCCGATCAATCGAAAAACAACCTTGAGCGCTCTTCTGGCAA
TAAAGTGCCAGACGATTTAAAACGCTTCACTCAAGCAATGCATCAGGCAA
CCTTGAGGGAGATAGGAGGAAGAAAGGCGCCCCATAATGAAACACCGGTG
TTGAAACAAAAAAAACTGACACATTAGGGCTGCCGTGGATGTTAGTATCC
ATGACAGAGACAACATACAACAGTCTTGGAAAGACTCTATCGTAATGTCT
CAACCCCGAATTGGGGAAGAAGAATAGTGTTGGCCAGGAGTAGCCAACAC
AAGGGTAAAAAGTAAGAACGACCAAGCCGAAAAAGGCTACGGTCCTGGTT
CTGAAAAATATATCCTGTTCGCCGGTCCACGTTGTTGCGACCGTACGAAC
AAAGATAACCAGAAGGACAAGCTTGGTTGCAAAAATGTGACCACAGAAAA
ACCATTCCAGATGGCTGCAAAAACGTGGGTAAAACGAATTACTACACTGA
ATGTGACCACAGAAAAAACCCTTCCAGTTGGTTGCATGTGACCACAGAGA
AACCATTCAATACGGTCAACACAGTATTGGAGCCGTAAGTTGCCGTAATG
GCAGTATCACGGGCGTGCCAGGCGTCGAAGCGGACAAAAGCCATAGGTAA
TCGAACGTGATAGGAACGGAGGACGCTCAAATCGATGCCCTCTTGTTCGT
AGCCCAGATGAGGAGATCGTTTTACGGTAGAAGCCGAGATGAATATTCTC
GCATTTTATTGCCGTATACAACAACAATTCTGACCTAGGGCAAAAATACC
TTAAATCCCCATACAAGCGAACGCTTGGACAATGTATCTCTGAGAAGACG
CGAGTGATGCGGAGATGATTGGAAATAATAGTGATTCAGTTCAGCAAAAG
GCAATGGTAAAGAACTGGGCAAAAACGTCAACTGGCTTATTGATTGTGAG
TCAACGGCAGAGCTACAATATCACCAGACGAAAGCTAGCCGGACATCTTG
AGGGTGACATCTGACCAAGAAGTCAATAAAAGGGGCGTAGCGTTTGCCGT
AACCTCAGAAATGGACAAGTACTGGGAAGCTAGCCAGCAAGGTTCAGTGC
CACGTGGAGTTAAAAATAATACTTACAGTACTCTGCCGTGAAACGAGGAT
TGTGGCAACAAACTAACCATAAATGAAACGACGTACAGTATGGTGAGGGC
TACCTAGTCTTTACAAGTAACAACACTTGATCTTGGTGCTGTCTGATGCA
CAGACCATTCTCCGTTTGTAAGCGACAACGTACGGAGCTGAAAATTCTTG
ACCCCAGCTATGGGTTGAGTTCCCTTTTCCTGGGACTAGTGGTTTATGGC
CACGAAAGACATCACCAGCGTACAGCTTACTGATGATAACTGACGCTTCA
AGCCCGAGGTTTGGGCTTGGGTGGGCTACGTGTTACTTACTGGTAGCGCC
CACGGACTACTCGGTGACAAGTTGATACCGCGGGTAGCCGTTTTAAAAGG
GTATGATCACGAGGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGA
CTTTCCTTTTGAAAAAGGGTGTCATGATGAAGGTGTGTGATCGAGTTACA
GACAACTACAAAATGGACGTGAAACTGAGGATCAAACGACAGTTCTGACT
GACGACAGTGTCCATTATTACCTTAGGGCGAGGCAAAATACCTCGCGCGT
GGTTTTGTTTCTGGATTCGAAAATTTCCCATACAGCATAATTTGTTTTGA
CAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAA
GCCACCGTAAGAGACGACGAGGGCGTAATGTTCAAGACGGTTACGAGCGC
AACGCTGGTAGAAGACCGGCCCATCTTGAAGAAATCAGCCGGCCAAGACA
AGCATCGGTGGGCAGATATTTGTAATGATGAATCCAACGCTGGGACCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig685:165011..168309-

>mRNA_F-serratus_M_contig685.17913.1 ID=mRNA_F-serratus_M_contig685.17913.1|Name=mRNA_F-serratus_M_contig685.17913.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig685:165011..168309- (Fucus serratus male)
TCAATCCAAGCTCTTAATAGATTAACCTTGGATGGGAATAATGAACGGAA
AACGTCCGAGAAGGAAGATAGCGATACAAAAATAAAGAAATTAGAAGTGC
TCTTATTTCCGAATACAAACCGCTCGTCGAACGCAGTCGGCAAGGCAGAC
ACGTCGAGCGTCAATCGAAGGCTTGTGACACGCGACAAGCAGCACGACCG
ACCTACGTCGCTAGCCAGTCACGAAAAAGTCAATCCAAGCTCTTAATAGA
TTAACCTTGGATGGGAATAATGAACGGAAAACGTCCGAGAAGGAAGATAG
CGATACAAAAATAAAGAAATTAGAAGTGCTCTTATTTCCGAATACAAACC
GCTCGTCGAACGCAGTCGGCAAGGCAGACACGTCGAGCGTCAATCGAAGG
CTTGTGACACGCGACAAGCAGCACGACCGACCTACGTCGCTAGCCAGTCA
CGAAAAAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTC
TCCAAGCCACCGTAAGAGACGACGAGGGCGTAATGTTCAAGACGGTTACG
AGCGCAACGCTGGTAGAAGACCGGCCCATCTTGAAGAAATCAGCCGGCCA
AGACAAGCATCGGTGGGCAGATATTTGTAATGATGAATCCAACGCTGGGA
CCGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAAG
CCACCGTAAGAGACGACGAGGGCGTAATGTTCAAGACGGTTACGAGCGCA
ACGCTGGTAGAAGACCGGCCCATCTTGAAGAAATCAGCCGGCCAAGACAA
GCATCGGTGGGCAGATATTTGTAATGATGAATCCAACGCTGGGACC
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